Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:neural plate pattern specification
go back to main search page
Accession:GO:0060896 term browser browse the term
Definition:The developmental process that results in the creation of defined areas or spaces within the neural plate to which cells respond and eventually are instructed to differentiate.
Synonyms:xref: Reactome:R-HSA-9834899 "Specification of the neural plate border"

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
neural plate pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr 9:44,944,463...45,108,832
Ensembl chr 9:44,941,460...45,027,275 		JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSBP3 single stranded DNA binding protein 3 involved_in ISO (PMID:15857913) UniProt PMID:15857913 NCBI chr20:78,528,630...78,708,518 JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein involved_in ISO (PMID:23806618) UniProt PMID:23806618 NCBI chr 6:42,968,715...42,975,374
Ensembl chr 6:42,969,000...42,975,368 		JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in ISO (PMID:23806618) UniProt PMID:23806618 NCBI chr  X:12,222,396...12,256,802
Ensembl chr  X:12,222,760...12,256,557 		JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:24,270,963...24,296,263
Ensembl chr20:24,270,952...24,296,647 		JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:36,816,783...36,818,693
Ensembl chr16:36,817,476...36,818,174 		JBrowse link
G TBX18 T-box transcription factor 18 involved_in ISO (PMID:17584735) BHF-UCL PMID:17584735 NCBI chr13:9,407,384...9,441,157
Ensembl chr13:9,411,004...9,439,642 		JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2CD3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19004860) MGI
Ensembl		 PMID:19004860 GO_REF:0000107 NCBI chr 1:65,282,311...65,436,007
Ensembl chr 1:65,282,318...65,435,834 		JBrowse link
G LOC103219825 protein patched homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:107,580,895...107,656,443
Ensembl chr12:107,590,663...107,652,985 		JBrowse link
neural plate mediolateral regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr 9:44,944,463...45,108,832
Ensembl chr 9:44,941,460...45,027,275 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19806
    multicellular organismal process 7486
      pattern specification process 494
        neural plate pattern specification 9
          neural plate axis specification 2
          neural plate regionalization + 7
Path 2
Term Annotations click to browse term
  biological_process 19806
    developmental process 6822
      anatomical structure development 6401
        multicellular organism development 5150
          pattern specification process 494
            neural plate pattern specification 9
              neural plate axis specification 2
              neural plate regionalization + 7
paths to the root