ONTOLOGY REPORT - ANNOTATIONS |
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Term: | cell fate commitment involved in formation of primary germ layer |
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Accession: | GO:0060795
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browse the term
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Definition: | The commitment of cells to specific cell fates of the endoderm, ectoderm, or mesoderm as a part of gastrulation. |
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POU5F1 |
POU class 5 homeobox 1 |
involved_in |
ISO |
(PMID:19736317) |
BHF-UCL |
PMID:19736317 |
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NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426
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NODAL |
nodal growth differentiation factor |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:2677178|PMID:14511481) |
MGI Ensembl |
PMID:14511481 |
GO_REF:0000107 MGI:2677178 |
NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
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ELF5 |
E74 like ETS transcription factor 5 |
acts_upstream_of_or_within |
ISO |
(MGI:5616945|PMID:25446535) |
MGI |
PMID:25446535 |
MGI:5616945 |
NCBI chr11:34,453,550...34,486,519
Ensembl chr11:34,329,889...34,362,770
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ETS2 |
ETS proto-oncogene 2, transcription factor |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:5616945|PMID:25446535) |
MGI Ensembl |
PMID:25446535 |
GO_REF:0000107 MGI:5616945 |
NCBI chr21:25,158,457...25,178,035
Ensembl chr21:38,512,835...38,527,651
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POU5F1 |
POU class 5 homeobox 1 |
acts_upstream_of_or_within |
ISO |
(MGI:1355046|PMID:10742100) |
MGI |
PMID:10742100 |
MGI:1355046 |
NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426
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CDC73 |
cell division cycle 73 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 1:168,581,730...168,710,915
Ensembl chr 1:172,875,365...173,004,934
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CTNNB1 |
catenin beta 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
(MGI:3625553|PMID:12194849) |
Ensembl MGI |
PMID:12194849 |
GO_REF:0000107 MGI:3625553 |
NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
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CTR9 |
CTR9 homolog, Paf1/RNA polymerase II complex component |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr11:10,884,353...10,913,246
Ensembl chr11:10,610,892...10,639,808
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LEO1 |
LEO1 homolog, Paf1/RNA polymerase II complex component |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr15:30,879,431...30,913,361
Ensembl chr15:49,208,132...49,241,055
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PAF1 |
PAF1 homolog, Paf1/RNA polymerase II complex component |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr19:36,484,099...36,489,364
Ensembl chr19:45,031,819...45,037,169
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POU5F1 |
POU class 5 homeobox 1 |
acts_upstream_of_or_within |
ISO |
(MGI:1355046|PMID:10742100) |
MGI |
PMID:10742100 |
MGI:1355046 |
NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426
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RTF1 |
RTF1 homolog, Paf1/RNA polymerase II complex component |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr15:20,355,927...20,424,153
Ensembl chr15:38,599,163...38,662,100
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GATA6 |
GATA binding protein 6 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:4442295|PMID:20308546) |
MGI Ensembl |
PMID:20308546 |
GO_REF:0000107 MGI:4442295 |
NCBI chr18:15,411,764...15,444,402
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SOX17 |
SRY-box transcription factor 17 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:4442295|PMID:20308546) |
MGI Ensembl |
PMID:20308546 |
GO_REF:0000107 MGI:4442295 |
NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808
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EOMES |
eomesodermin |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:4887279|PMID:21245162) |
MGI TreeGrafter |
PMID:21245162 |
GO_REF:0000118 MGI:4887279 |
NCBI chr 3:27,601,829...27,608,701
Ensembl chr 3:27,925,086...27,930,274
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HNF1B |
HNF1 homeobox B |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3807614|PMID:18635606) |
MGI Ensembl |
PMID:18635606 |
GO_REF:0000107 MGI:3807614 |
NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863
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NANOG |
Nanog homeobox |
acts_upstream_of_or_within |
ISO |
(PMID:20713518) |
MGI |
PMID:20713518 |
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NCBI chr12:7,913,037...7,919,715
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POU5F1 |
POU class 5 homeobox 1 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(PMID:20713518) |
MGI Ensembl |
PMID:20713518 |
GO_REF:0000107 |
NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426
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SOX17 |
SRY-box transcription factor 17 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808
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SOX2 |
SRY-box transcription factor 2 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(PMID:21245162) |
MGI Ensembl |
PMID:21245162 |
GO_REF:0000107 |
NCBI chr 3:178,744,881...178,747,392
Ensembl chr 3:186,922,705...186,923,662
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NANOG |
Nanog homeobox |
acts_upstream_of_or_within |
ISO |
(MGI:3654744|PMID:16801560) |
MGI |
PMID:16801560 |
MGI:3654744 |
NCBI chr12:7,913,037...7,919,715
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POU5F1 |
POU class 5 homeobox 1 |
acts_upstream_of_or_within |
ISO |
(MGI:1355046|PMID:10742100) |
MGI |
PMID:10742100 |
MGI:1355046 |
NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426
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SMAD1 |
SMAD family member 1 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3654744|PMID:16801560) |
MGI Ensembl |
PMID:16801560 |
GO_REF:0000107 MGI:3654744 |
NCBI chr 4:137,822,269...137,899,700
Ensembl chr 4:149,481,836...149,558,135
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BMP4 |
bone morphogenetic protein 4 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:76261|PMID:7657163) |
MGI Ensembl |
PMID:7657163 |
GO_REF:0000107 MGI:76261 |
NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
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EYA1 |
EYA transcriptional coactivator and phosphatase 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 8:67,728,057...68,060,069
Ensembl chr 8:69,387,769...69,551,829
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HOXA11 |
homeobox A11 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103
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PAX2 |
paired box 2 |
involved_in |
ISO |
(MGI:3768605|PMID:17785448) |
UniProt |
PMID:17785448 |
MGI:3768605 |
NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028
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SFRP2 |
secreted frizzled related protein 2 |
acts_upstream_of involved_in |
ISO IEA |
(MGI:3711603|PMID:17462603) |
MGI Ensembl |
PMID:17462603 |
GO_REF:0000107 MGI:3711603 |
NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258
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SIX2 |
SIX homeobox 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr2A:45,109,414...45,113,887
Ensembl chr2A:46,039,582...46,044,035
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TBX6 |
T-box transcription factor 6 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:2447720|PMID:9490412) |
MGI Ensembl |
PMID:9490412 |
GO_REF:0000107 MGI:2447720 |
Ensembl chr16:30,460,305...30,467,070
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FZD7 |
frizzled class receptor 7 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr2B:89,290,929...89,294,873
Ensembl chr2B:207,439,942...207,446,283
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MESP1 |
mesoderm posterior bHLH transcription factor 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr15:68,440,626...68,441,935
Ensembl chr15:87,645,768...87,647,210
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DKK1 |
dickkopf WNT signaling pathway inhibitor 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776
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MESP1 |
mesoderm posterior bHLH transcription factor 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr15:68,440,626...68,441,935
Ensembl chr15:87,645,768...87,647,210
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SFRP2 |
secreted frizzled related protein 2 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3711603|PMID:17462603) |
MGI Ensembl |
PMID:17462603 |
GO_REF:0000107 MGI:3711603 |
NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258
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FOXC2 |
forkhead box C2 |
acts_upstream_of_or_within |
ISO |
(MGI:86990|PMID:9106663) |
MGI |
PMID:9106663 |
MGI:86990 |
NCBI chr16:67,237,476...67,239,545
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WNT3A |
Wnt family member 3A |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:86727|PMID:9126297) |
MGI Ensembl |
PMID:9126297 |
GO_REF:0000107 MGI:86727 |
NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469
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WNT3A |
Wnt family member 3A |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469
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DKK1 |
dickkopf WNT signaling pathway inhibitor 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776
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BMPR1A |
bone morphogenetic protein receptor type 1A |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3702797|PMID:16943278) |
MGI Ensembl |
PMID:16943278 |
GO_REF:0000107 MGI:3702797 |
NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912
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FGFR1 |
fibroblast growth factor receptor 1 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3702797|PMID:16943278) |
MGI Ensembl |
PMID:16943278 |
GO_REF:0000107 MGI:3702797 |
NCBI chr 8:37,713,133...37,773,098
Ensembl chr 8:34,890,147...34,948,904
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Term paths to the root
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