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ONTOLOGY REPORT - ANNOTATIONS

Term:ectodermal placode formation
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Accession:GO:0060788 term browser browse the term
Definition:The developmental process in which an ectodermal placode forms. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.


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hair follicle placode formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:1195272|MGI:2148594|MGI:2148596 (PMID:11371349), (PMID:19619491)
GO_REF:0000107 		RGD
Ensembl		 PMID:11371349 PMID:19619491 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Eda ectodysplasin-A acts_upstream_of_or_within ISO
IEA 		MGI:88276 (PMID:19619491)
GO_REF:0000107 		RGD
Ensembl		 PMID:19619491 GO_REF:0000107 NCBI chr  X:69,118,577...69,520,274
Ensembl chr  X:69,118,796...69,520,274 		JBrowse link
G Gnas GNAS complex locus involved_in ISO (PMID:12719376) RGD PMID:12719376 NCBI chr 3:183,489,648...183,554,570
Ensembl chr 3:183,503,243...183,554,536 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:P70288 (PMID:21093383) RGD PMID:21093383 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:147,138,156...147,165,387 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:O09106 (PMID:21093383) RGD PMID:21093383 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:42,102,861...42,126,311 		JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA 		MGI:3521833 (PMID:15569927)
GO_REF:0000107 		RGD
Ensembl		 PMID:15569927 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:54,597,182...54,678,774 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA 		(PMID:11850194)
GO_REF:0000107 		RGD
Ensembl		 PMID:11850194 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:104,200,378...104,250,975 		JBrowse link
mammary placode formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:19503830) RGD PMID:19503830 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:169,000,968...169,131,716 		JBrowse link
G Nrg3 neuregulin 3 acts_upstream_of_or_within ISO
IEA 		MGI:1889610 (PMID:10723730)
GO_REF:0000107 		RGD
Ensembl		 PMID:10723730 GO_REF:0000107 NCBI chr16:14,256,540...15,374,107
Ensembl chr16:14,257,148...15,374,147 		JBrowse link
G Tbx2 T-box transcription factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:98495 (PMID:16222716)
GO_REF:0000107 		RGD
Ensembl		 PMID:16222716 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:71,177,082...71,186,275 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:98494 (PMID:16222716), (PMID:17071745)
GO_REF:0000107 		RGD
Ensembl		 PMID:16222716 PMID:17071745 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:42,540,378...42,554,171 		JBrowse link
negative regulation of hair follicle placode formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk4 dickkopf WNT signaling pathway inhibitor 4 acts_upstream_of_or_within ISO
IEA 		(PMID:18508042)
GO_REF:0000107 		RGD
Ensembl		 PMID:18508042 GO_REF:0000107 NCBI chr16:76,105,679...76,109,044
Ensembl chr16:76,105,679...76,109,044 		JBrowse link
olfactory placode formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO MGI:98364 (PMID:17140559) RGD PMID:17140559 NCBI chr13:80,653,602...80,796,279
Ensembl chr13:80,663,714...80,796,356 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO
IEA 		(PMID:19027001)
GO_REF:0000107 		RGD
Ensembl		 PMID:19027001 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:19027001) RGD PMID:19027001 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:97,538,202...97,551,872 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:101898 (PMID:17140559) RGD PMID:17140559 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:119,454,541...119,496,350 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20635
    developmental process 7282
      anatomical structure formation involved in morphogenesis 1401
        ectodermal placode formation 16
          hair follicle placode formation + 6
          insect visual primordium formation 0
          lens placode formation + 2
          mammary placode formation + 4
          olfactory placode formation 4
          otic placode formation 0
          sebaceous gland placode formation 0
          sweat gland placode formation 0
          tooth placode formation 0
Path 2
Term Annotations click to browse term
  biological_process 20635
    developmental process 7282
      anatomical structure development 6765
        anatomical structure morphogenesis 3065
          anatomical structure formation involved in morphogenesis 1401
            ectodermal placode formation 16
              hair follicle placode formation + 6
              insect visual primordium formation 0
              lens placode formation + 2
              mammary placode formation + 4
              olfactory placode formation 4
              otic placode formation 0
              sebaceous gland placode formation 0
              sweat gland placode formation 0
              tooth placode formation 0
paths to the root