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ONTOLOGY REPORT - ANNOTATIONS


Term:cell differentiation involved in embryonic placenta development
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Accession:GO:0060706 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of the embryonic placenta.


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cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in ISO (MGI:1354065|PMID:10716450) RGD PMID:10716450 MGI:1354065 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Gcm1 glial cells missing transcription factor 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2183479 (MGI:1860502|PMID:10888880)
RGD PMID:10888880 PMID:21873635 MGI:1860502, RGD:13792537 NCBI chr 8:78,925,687...78,938,924
Ensembl chr 8:78,925,687...78,938,924
JBrowse link
G Krt19 keratin 19 acts_upstream_of_or_within ISO MGI:96705 (MGI:1926669|PMID:11062258) RGD PMID:11062258 MGI:1926669 NCBI chr10:85,075,835...85,080,552 JBrowse link
G Krt8 keratin 8 acts_upstream_of_or_within ISO MGI:96693 (MGI:1926669|PMID:11062258) RGD PMID:11062258 MGI:1926669 NCBI chr 7:133,124,203...133,131,656
Ensembl chr 7:133,124,203...133,131,728
JBrowse link
G Stk3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1929004 (MGI:4412133|PMID:19786569)
Ensembl
RGD
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr 7:66,053,209...66,323,292
Ensembl chr 7:66,052,345...66,323,233
JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within ISO MGI:1928487 (MGI:4412133|PMID:19786569) RGD PMID:19786569 MGI:4412133 NCBI chr 3:152,745,958...152,827,747
Ensembl chr 3:152,745,681...152,827,744
JBrowse link
epithelial cell morphogenesis involved in placental branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO MGI:4340678 (MGI:5634845|PMID:25758223) RGD PMID:25758223 MGI:5634845 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258
JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type, 2 acts_upstream_of_or_within ISO MGI:1338881|MGI:2156187 (MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:4360135 NCBI chr 1:84,558,159...84,580,616
Ensembl chr 1:84,558,166...84,580,616
JBrowse link
G St14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within ISO MGI:1338031 (MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:4360135 NCBI chr 8:29,540,805...29,581,704
Ensembl chr 8:29,540,811...29,581,517
JBrowse link
glycogen cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within ISO MGI:2675202 (MGI:2673047|PMID:12783884) RGD PMID:12783884 MGI:2673047 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
JBrowse link
negative regulation of cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO (MGI:1270969|PMID:9676199) RGD PMID:9676199 MGI:1270969 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
JBrowse link
regulation of cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcm1 glial cells missing transcription factor 1 involved_in ISO (PMID:19219068) RGD PMID:19219068 NCBI chr 8:78,925,687...78,938,924
Ensembl chr 8:78,925,687...78,938,924
JBrowse link
G Stk3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1929004 (MGI:5603236|PMID:24595170)
Ensembl
RGD
PMID:24595170 GO_REF:0000107 MGI:5603236 NCBI chr 7:66,053,209...66,323,292
Ensembl chr 7:66,052,345...66,323,233
JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within ISO MGI:1928487 (MGI:5603236|PMID:24595170) RGD PMID:24595170 MGI:5603236 NCBI chr 3:152,745,958...152,827,747
Ensembl chr 3:152,745,681...152,827,744
JBrowse link
spongiotrophoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:2153832 (MGI:1097723|PMID:9331331) RGD PMID:9331331 MGI:1097723 NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406
JBrowse link
G Gjb5 gap junction protein, beta 5 acts_upstream_of_or_within ISO MGI:3769388 (MGI:3768289|PMID:17961533) RGD PMID:17961533 MGI:3768289 NCBI chr 5:139,680,670...139,683,588
Ensembl chr 5:139,680,671...139,683,583
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO MGI:2137552 (MGI:5604339|PMID:24855001) RGD PMID:24855001 MGI:5604339 NCBI chr 6:69,181,429...69,267,803
Ensembl chr 6:69,181,436...69,268,053
JBrowse link
G Lif LIF, interleukin 6 family cytokine involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1201791 (MGI:3609466|PMID:16258063)
Ensembl
RGD
PMID:16258063 GO_REF:0000107 MGI:3609466 NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482
JBrowse link
G Socs3 suppressor of cytokine signaling 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180861|MGI:96787 (MGI:3609466|PMID:16258063)
Ensembl
RGD
PMID:16258063 GO_REF:0000107 MGI:3609466 NCBI chr10:103,193,909...103,197,322
Ensembl chr10:103,193,537...103,197,787
JBrowse link
syncytiotrophoblast cell differentiation involved in labyrinthine layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO MGI:2151092 (MGI:5294250|PMID:21972064) RGD PMID:21972064 MGI:5294250 NCBI chr 4:5,452,683...5,556,679
Ensembl chr 4:5,452,683...5,556,659
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3583769 (MGI:5494335|PMID:23610556)
Ensembl
RGD
PMID:23610556 GO_REF:0000107 MGI:5494335 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
trophoblast giant cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cts7 cathepsin 7 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:3,388,299...3,424,664
Ensembl chr17:3,388,299...3,393,439
JBrowse link
G Cts8 cathepsin 8 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:3,468,710...3,480,881
Ensembl chr17:3,468,710...3,480,881
JBrowse link
G E2f7 E2F transcription factor 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:5449497|PMID:23064266)
UniProt
RGD
PMID:23064266 GO_REF:0000024 MGI:5449497 NCBI chr 7:46,150,533...46,192,739
Ensembl chr 7:46,151,293...46,192,734
JBrowse link
G E2f8 E2F transcription factor 8 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5449497|PMID:23064266)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23064266 GO_REF:0000024 GO_REF:0000107 MGI:5449497 NCBI chr 1:98,565,717...98,584,265
Ensembl chr 1:98,565,717...98,584,098
JBrowse link
G Erf Ets2 repressor factor acts_upstream_of_or_within ISO MGI:3719472 (MGI:3718929|PMID:17502352) RGD PMID:17502352 MGI:3718929 NCBI chr 1:80,829,935...80,838,388
Ensembl chr 1:80,829,935...80,838,388
JBrowse link
G Gjb5 gap junction protein, beta 5 acts_upstream_of_or_within ISO (MGI:5605134|PMID:24866916) RGD PMID:24866916 MGI:5605134 NCBI chr 5:139,680,670...139,683,588
Ensembl chr 5:139,680,671...139,683,583
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:5518521|PMID:23911935)
(MGI:3625684|PMID:16759287), (MGI:4359361|PMID:17891141)
UniProt
RGD
PMID:16759287 PMID:17891141 PMID:23911935 GO_REF:0000024 MGI:3625684 MGI:4359361 MGI:5518521 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO MGI:2137552 (MGI:5604339|PMID:24855001) RGD PMID:24855001 MGI:5604339 NCBI chr 6:69,181,429...69,267,803
Ensembl chr 6:69,181,436...69,268,053
JBrowse link
G Lif LIF, interleukin 6 family cytokine involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1201791 (MGI:3609466|PMID:16258063)
Ensembl
RGD
PMID:16258063 GO_REF:0000107 MGI:3609466 NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482
JBrowse link
G Mdfi MyoD family inhibitor acts_upstream_of_or_within ISO MGI:2155446 (MGI:1312999|PMID:9799236) RGD PMID:9799236 MGI:1312999 NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:13,156,866...13,175,217
JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 acts_upstream_of_or_within ISO MGI:2385933 (MGI:3708079|PMID:17404209) RGD PMID:17404209 MGI:3708079 NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031
JBrowse link
G Palld palladin, cytoskeletal associated protein IEP RGD PMID:16481593 RGD:2325785 NCBI chr16:28,228,006...28,621,349 JBrowse link
G Plg plasminogen acts_upstream_of_or_within ISO MGI:1857291 (MGI:2668370|PMID:12900459) RGD PMID:12900459 MGI:2668370 NCBI chr 1:48,325,186...48,367,643
Ensembl chr 1:48,325,185...48,367,786
JBrowse link
G Plk4 polo-like kinase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:4359361|PMID:17891141)
UniProt
RGD
PMID:17891141 GO_REF:0000024 MGI:4359361 NCBI chr 2:123,802,512...123,820,942
Ensembl chr 2:123,802,512...123,820,942
JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO MGI:5439582 (MGI:5438144|PMID:22987638) RGD PMID:22987638 MGI:5438144 NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488
JBrowse link
G Senp2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO MGI:3832730 (MGI:3831588|PMID:19090619) RGD PMID:19090619 MGI:3831588 NCBI chr11:78,981,429...79,018,274
Ensembl chr11:78,981,432...79,018,238
JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO (MGI:1270969|PMID:9676199) RGD PMID:9676199 MGI:1270969 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
JBrowse link
G Socs3 suppressor of cytokine signaling 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180861|MGI:96787 (MGI:3609466|PMID:16258063)
Ensembl
RGD
PMID:16258063 GO_REF:0000107 MGI:3609466 NCBI chr10:103,193,909...103,197,322
Ensembl chr10:103,193,537...103,197,787
JBrowse link
G Sox15 SRY-box transcription factor 15 involved_in ISO (MGI:3625684|PMID:16759287) RGD PMID:16759287 MGI:3625684 NCBI chr10:54,373,602...54,376,591
Ensembl chr10:54,372,403...54,376,591
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    developmental process 6769
      developmental process involved in reproduction 1198
        cell differentiation involved in embryonic placenta development 32
          epithelial cell differentiation involved in embryonic placenta development + 3
          glycogen cell differentiation involved in embryonic placenta development 1
          negative regulation of cell differentiation involved in embryonic placenta development + 1
          regulation of cell differentiation involved in embryonic placenta development + 4
          spongiotrophoblast differentiation 5
          syncytiotrophoblast cell differentiation involved in labyrinthine layer development 2
          trophoblast giant cell differentiation 19
Path 2
Term Annotations click to browse term
  biological_process 19492
    developmental process 6769
      anatomical structure development 6195
        multicellular organism development 5632
          system development 5300
            reproductive system development 590
              reproductive structure development 585
                placenta development 193
                  embryonic placenta development 110
                    cell differentiation involved in embryonic placenta development 32
                      epithelial cell differentiation involved in embryonic placenta development + 3
                      glycogen cell differentiation involved in embryonic placenta development 1
                      negative regulation of cell differentiation involved in embryonic placenta development + 1
                      regulation of cell differentiation involved in embryonic placenta development + 4
                      spongiotrophoblast differentiation 5
                      syncytiotrophoblast cell differentiation involved in labyrinthine layer development 2
                      trophoblast giant cell differentiation 19
paths to the root