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ONTOLOGY REPORT - ANNOTATIONS

Term:tube lumen cavitation
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Accession:GO:0060605 term browser browse the term
Definition:The formation of a lumen by hollowing out a solid rod or cord.


show annotations for term's descendants           Sort by:
salivary gland cavitation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (PMID:18816447) RGD PMID:18816447 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775 		JBrowse link
G Eda ectodysplasin-A acts_upstream_of_or_within ISO (PMID:12629675) RGD PMID:12629675 NCBI chr  X:65,078,454...65,480,172
Ensembl chr  X:65,078,673...65,480,172 		JBrowse link
G Edar ectodysplasin-A receptor acts_upstream_of_or_within ISO (PMID:12629675) RGD PMID:12629675 NCBI chr20:26,587,836...26,666,543
Ensembl chr20:26,587,839...26,666,494 		JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO MGI:3530139 (PMID:25403566) RGD PMID:25403566 NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:16332353)		 Ensembl
RGD		 PMID:16332353 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Tgm2 transglutaminase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15970210)		 Ensembl
RGD		 PMID:15970210 GO_REF:0000107 NCBI chr 3:146,772,684...146,801,924
Ensembl chr 3:146,772,687...146,801,981 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    developmental process 7068
      anatomical structure formation involved in morphogenesis 1379
        tube formation 186
          tube lumen cavitation 6
            apoptotic process involved in tube lumen cavitation + 0
            mammary gland duct cavitation 0
            negative regulation of tube lumen cavitation 0
            regulation of tube lumen cavitation + 0
            salivary gland cavitation + 6
Path 2
Term Annotations click to browse term
  biological_process 20413
    developmental process 7068
      anatomical structure development 6575
        multicellular organism development 5290
          tube development 1345
            tube morphogenesis 1043
              tube formation 186
                tube lumen cavitation 6
                  apoptotic process involved in tube lumen cavitation + 0
                  mammary gland duct cavitation 0
                  negative regulation of tube lumen cavitation 0
                  regulation of tube lumen cavitation + 0
                  salivary gland cavitation + 6
paths to the root