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ONTOLOGY REPORT - ANNOTATIONS


Term:mammary gland duct morphogenesis
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Accession:GO:0060603 term browser browse the term
Definition:The process in which anatomical structures of the mammary ducts are generated and organized. Mammary ducts are epithelial tubes that transport milk.



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mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP (MGI:2151643|PMID:11783999) MGI PMID:11783999 MGI:2151643 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349
JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 acts_upstream_of_or_within IGI (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IGI (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 acts_upstream_of_or_within IMP (MGI:3758540|PMID:12198239) MGI PMID:12198239 MGI:3758540 NCBI chr18:39,543,598...39,652,485
Ensembl chr18:39,543,598...39,652,474
JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within IGI (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chr11:68,100,190...68,277,652
Ensembl chr11:68,100,190...68,291,649
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IMP (MGI:1346456|PMID:10529434) MGI PMID:10529434 MGI:1346456 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412
JBrowse link
G Scrib scribbled planar cell polarity involved_in IMP (MGI:4359580|PMID:19041750) UniProt PMID:19041750 MGI:4359580 NCBI chr15:75,919,011...75,941,633
Ensembl chr15:75,919,007...75,941,633
JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within IMP
IGI
(MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chr 5:48,138,633...48,465,077
Ensembl chr 5:48,140,480...48,465,075
JBrowse link
branch elongation involved in mammary gland duct branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IMP (MGI:3814777|PMID:18614704) MGI PMID:18614704 MGI:3814777 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btrc beta-transducin repeat containing protein acts_upstream_of_or_within IMP (MGI:3054694|PMID:15340078) MGI PMID:15340078 MGI:3054694 NCBI chr19:45,352,119...45,521,782
Ensembl chr19:45,352,173...45,518,452
JBrowse link
G Ccl11 chemokine (C-C motif) ligand 11 acts_upstream_of_or_within IMP (MGI:3640884|PMID:10804170) MGI PMID:10804170 MGI:3640884 NCBI chr11:81,948,658...81,953,781
Ensembl chr11:81,948,649...81,953,781
JBrowse link
G Csf1 colony stimulating factor 1 (macrophage) acts_upstream_of_or_within IMP (MGI:3640884|PMID:10804170) MGI PMID:10804170 MGI:3640884 NCBI chr 3:107,648,364...107,668,048
Ensembl chr 3:107,648,364...107,667,785
JBrowse link
G Ddr1 discoidin domain receptor family, member 1 acts_upstream_of_or_within IMP (MGI:1932625|PMID:11283268) MGI PMID:11283268 MGI:1932625 NCBI chr17:35,992,459...36,015,633
Ensembl chr17:35,992,459...36,015,513
JBrowse link
G Epha2 Eph receptor A2 involved_in IMP (MGI:5284750|PMID:19321667) UniProt PMID:19321667 MGI:5284750 NCBI chr 4:141,028,532...141,056,695
Ensembl chr 4:141,028,551...141,056,695
JBrowse link
G Etv4 ets variant 4 acts_upstream_of_or_within IDA
IMP
(MGI:2667785|PMID:12871699)
(MGI:3828920|PMID:18977342)
MGI PMID:12871699 PMID:18977342 MGI:2667785 MGI:3828920 NCBI chr11:101,660,573...101,677,963
Ensembl chr11:101,660,568...101,676,197
JBrowse link
G Kdm5b lysine (K)-specific demethylase 5B acts_upstream_of_or_within IMP (MGI:5619178|PMID:24802759) MGI PMID:24802759 MGI:5619178 NCBI chr 1:134,487,916...134,560,621
Ensembl chr 1:134,487,909...134,563,023
JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:3692480|PMID:16973609)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:16973609 PMID:21873635 MGI:3692480 MGI:6201960 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IMP (MGI:1355063|PMID:10742104) MGI PMID:10742104 MGI:1355063 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110
JBrowse link
G Pml promyelocytic leukemia acts_upstream_of_or_within IMP (MGI:3839212|PMID:19261859) MGI PMID:19261859 MGI:3839212 NCBI chr 9:58,124,462...58,157,077
Ensembl chr 9:58,125,359...58,157,069
JBrowse link
G Slc12a2 solute carrier family 12, member 2 acts_upstream_of_or_within IMP (MGI:2180693|PMID:8864124) MGI PMID:8864124 MGI:2180693 NCBI chr18:58,011,505...58,079,893
Ensembl chr18:58,011,750...58,079,893
JBrowse link
G Src Rous sarcoma oncogene acts_upstream_of_or_within IMP (MGI:3589531|PMID:16007215) MGI PMID:16007215 MGI:3589531 NCBI chr 2:157,265,790...157,313,758
Ensembl chr 2:157,260,364...157,313,782
JBrowse link
G Tbx3 T-box 3 acts_upstream_of_or_within IMP (MGI:3608166|PMID:16222716) MGI PMID:16222716 MGI:3608166 NCBI chr 5:119,808,600...119,822,789
Ensembl chr 5:119,808,734...119,822,789
JBrowse link
dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin acts_upstream_of_or_within IMP (MGI:3703920|PMID:17369357) MGI PMID:17369357 MGI:3703920 NCBI chr 5:91,287,458...91,296,291
Ensembl chr 5:91,287,458...91,296,291
JBrowse link
G Tfap2c transcription factor AP-2, gamma acts_upstream_of_or_within IMP (MGI:4422106|PMID:20131354) MGI PMID:20131354 MGI:4422106 NCBI chr 2:172,387,599...172,400,542
Ensembl chr 2:172,391,513...172,400,542
JBrowse link
epithelial cell proliferation involved in mammary gland duct elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin acts_upstream_of_or_within IMP (MGI:3703920|PMID:17369357) MGI PMID:17369357 MGI:3703920 NCBI chr 5:91,287,458...91,296,291
Ensembl chr 5:91,287,458...91,296,291
JBrowse link
G Esr1 estrogen receptor 1 (alpha) acts_upstream_of_or_within IMP (MGI:3629536|PMID:12021201) MGI PMID:12021201 MGI:3629536 NCBI chr10:4,561,989...4,955,633
Ensembl chr10:4,561,593...4,955,614
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within IMP (MGI:3576991|PMID:15647257) MGI PMID:15647257 MGI:3576991 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119
JBrowse link
G Tfap2c transcription factor AP-2, gamma acts_upstream_of_or_within IMP (MGI:4422106|PMID:20131354) MGI PMID:20131354 MGI:4422106 NCBI chr 2:172,387,599...172,400,542
Ensembl chr 2:172,391,513...172,400,542
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IDA (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405
JBrowse link
lateral sprouting involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within IMP (MGI:2683859|PMID:14676301) MGI PMID:14676301 MGI:2683859 NCBI chr  X:97,192,363...97,366,824
Ensembl chr  X:97,192,375...97,366,821
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IDA (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405
JBrowse link
mammary duct terminal end bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl11 chemokine (C-C motif) ligand 11 acts_upstream_of_or_within IMP (MGI:3640884|PMID:10804170) MGI PMID:10804170 MGI:3640884 NCBI chr11:81,948,658...81,953,781
Ensembl chr11:81,948,649...81,953,781
JBrowse link
G Csf1 colony stimulating factor 1 (macrophage) acts_upstream_of_or_within IMP (MGI:3640884|PMID:10804170) MGI PMID:10804170 MGI:3640884 NCBI chr 3:107,648,364...107,668,048
Ensembl chr 3:107,648,364...107,667,785
JBrowse link
G Kdm5b lysine (K)-specific demethylase 5B acts_upstream_of_or_within IMP (MGI:5619178|PMID:24802759) MGI PMID:24802759 MGI:5619178 NCBI chr 1:134,487,916...134,560,621
Ensembl chr 1:134,487,909...134,563,023
JBrowse link
G Mst1 macrophage stimulating 1 (hepatocyte growth factor-like) acts_upstream_of_or_within IMP (MGI:5614192|PMID:25049204) MGI PMID:25049204 MGI:5614192 NCBI chr 9:107,957,607...107,962,226
Ensembl chr 9:107,957,635...107,962,202
JBrowse link
G Robo1 roundabout guidance receptor 1 acts_upstream_of_or_within IMP (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chr16:71,824,406...72,844,379
Ensembl chr16:72,105,194...72,842,983
JBrowse link
G Slc12a2 solute carrier family 12, member 2 acts_upstream_of_or_within IMP (MGI:2180453|PMID:12040017) MGI PMID:12040017 MGI:2180453 NCBI chr18:58,011,505...58,079,893
Ensembl chr18:58,011,750...58,079,893
JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within IMP (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chr 5:48,138,633...48,465,077
Ensembl chr 5:48,140,480...48,465,075
JBrowse link
mammary gland branching involved in pregnancy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csmd1 CUB and Sushi multiple domains 1 acts_upstream_of_or_within IMP (MGI:6369467|PMID:31604923) MGI PMID:31604923 MGI:6369467 NCBI chr 8:15,942,538...17,586,908
Ensembl chr 8:15,942,537...17,585,602
JBrowse link
G Esr1 estrogen receptor 1 (alpha) acts_upstream_of_or_within IMP (MGI:1926565|PMID:10919287) MGI PMID:10919287 MGI:1926565 NCBI chr10:4,561,989...4,955,633
Ensembl chr10:4,561,593...4,955,614
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within IMP (MGI:3576991|PMID:15647257) MGI PMID:15647257 MGI:3576991 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119
JBrowse link
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor acts_upstream_of_or_within IMP (MGI:3051725|PMID:15178742) MGI PMID:15178742 MGI:3051725 NCBI chr15:97,752,308...97,806,177
Ensembl chr15:97,752,306...97,808,511
JBrowse link
mammary gland branching involved in thelarche term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin acts_upstream_of_or_within IMP (MGI:1336843|PMID:10331984), (MGI:3703920|PMID:17369357) MGI PMID:10331984 PMID:17369357 MGI:1336843 MGI:3703920 NCBI chr 5:91,287,458...91,296,291
Ensembl chr 5:91,287,458...91,296,291
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within IMP (MGI:3576991|PMID:15647257) MGI PMID:15647257 MGI:3576991 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 acts_upstream_of_or_within IMP (MGI:1859522|PMID:11015591) MGI PMID:11015591 MGI:1859522 NCBI chr 2:165,834,557...165,915,162
Ensembl chr 2:165,834,556...165,915,162
JBrowse link
G Phb2 prohibitin 2 acts_upstream_of_or_within IMP (MGI:3695669|PMID:17065319) MGI PMID:17065319 MGI:3695669 NCBI chr 6:124,689,252...124,693,908
Ensembl chr 6:124,689,299...124,693,913
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IMP (MGI:3814777|PMID:18614704) MGI PMID:18614704 MGI:3814777 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IDA (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405
JBrowse link
mammary gland bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pthlh parathyroid hormone-like peptide acts_upstream_of_or_within IMP (MGI:1203302|PMID:9477327) MGI PMID:9477327 MGI:1203302 NCBI chr 6:147,153,607...147,165,511
Ensembl chr 6:147,153,599...147,165,681
JBrowse link
mammary gland bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (MGI:2155478|PMID:11782400) MGI PMID:11782400 MGI:2155478 NCBI chr13:118,851,235...118,929,109
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IMP (MGI:2155478|PMID:11782400) MGI PMID:11782400 MGI:2155478 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079
JBrowse link
mammary gland bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sostdc1 sclerostin domain containing 1 acts_upstream_of_or_within IMP (MGI:5319554|PMID:22509524) MGI PMID:22509524 MGI:5319554 NCBI chr12:36,364,168...36,368,451
Ensembl chr12:36,364,138...36,368,451
JBrowse link
regulation of branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav3 caveolin 3 acts_upstream_of_or_within IMP (MGI:3830397|PMID:19164602) MGI PMID:19164602 MGI:3830397 NCBI chr 6:112,436,466...112,449,833
Ensembl chr 6:112,436,466...112,449,833
JBrowse link
G Etv5 ets variant 5 acts_upstream_of_or_within IDA (MGI:2667785|PMID:12871699) MGI PMID:12871699 MGI:2667785 NCBI chr16:22,200,063...22,258,320
Ensembl chr16:22,200,059...22,258,469
JBrowse link
G Phb2 prohibitin 2 acts_upstream_of_or_within IMP (MGI:3695669|PMID:17065319) MGI PMID:17065319 MGI:3695669 NCBI chr 6:124,689,252...124,693,908
Ensembl chr 6:124,689,299...124,693,913
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IGI (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IDA
IGI
(MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405
JBrowse link
tertiary branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within IMP (MGI:2683859|PMID:14676301) MGI PMID:14676301 MGI:2683859 NCBI chr  X:97,192,363...97,366,824
Ensembl chr  X:97,192,375...97,366,821
JBrowse link
G Pgr progesterone receptor acts_upstream_of_or_within IMP (MGI:1354852|PMID:10733525) MGI PMID:10733525 MGI:1354852 NCBI chr 9:8,890,017...8,968,612
Ensembl chr 9:8,899,834...8,968,612
JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 acts_upstream_of_or_within IMP (MGI:1354852|PMID:10733525) MGI PMID:10733525 MGI:1354852 NCBI chr 4:137,004,946...137,026,812
Ensembl chr 4:137,004,800...137,027,037
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28741
    developmental process 7323
      anatomical structure morphogenesis 3065
        tube morphogenesis 1066
          epithelial tube morphogenesis 409
            mammary gland duct morphogenesis 41
              branching involved in mammary gland duct morphogenesis + 29
              mammary duct terminal end bud growth 7
              mammary gland bud morphogenesis + 4
              mammary gland cord morphogenesis + 0
              mammary gland duct cavitation 0
              mammary gland duct regression in males 0
Path 2
Term Annotations click to browse term
  biological_process 28741
    developmental process 7323
      anatomical structure development 6734
        anatomical structure morphogenesis 3065
          animal organ morphogenesis 1198
            gland morphogenesis 170
              mammary gland morphogenesis 67
                mammary gland duct morphogenesis 41
                  branching involved in mammary gland duct morphogenesis + 29
                  mammary duct terminal end bud growth 7
                  mammary gland bud morphogenesis + 4
                  mammary gland cord morphogenesis + 0
                  mammary gland duct cavitation 0
                  mammary gland duct regression in males 0
paths to the root