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ONTOLOGY REPORT - ANNOTATIONS

Term:mammary gland duct morphogenesis
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Accession:GO:0060603 term browser browse the term
Definition:The process in which anatomical structures of the mammary ducts are generated and organized. Mammary ducts are epithelial tubes that transport milk.

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mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:2151643|PMID:11783999) MGI PMID:11783999 MGI:2151643 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 acts_upstream_of_or_within ISO (MGI:3758540|PMID:12198239) MGI PMID:12198239 MGI:3758540 NCBI chrNW_004955415:10,494,704...10,585,778
Ensembl chrNW_004955415:10,494,640...10,586,221 		JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chrNW_004955467:7,795,175...7,991,597
Ensembl chrNW_004955467:7,794,735...7,991,695 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (MGI:1346456|PMID:10529434) MGI PMID:10529434 MGI:1346456 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622 		JBrowse link
G Scrib scribble planar cell polarity protein involved_in ISO (MGI:4359580|PMID:19041750) UniProt PMID:19041750 MGI:4359580 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098 		JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within ISO (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908 		JBrowse link
branch elongation involved in mammary gland duct branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (MGI:3814777|PMID:18614704) MGI PMID:18614704 MGI:3814777 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (MGI:3054694|PMID:15340078) MGI PMID:15340078 MGI:3054694 NCBI chrNW_004955485:8,724,375...8,846,647
Ensembl chrNW_004955485:8,724,380...8,837,741 		JBrowse link
G Csf1 colony stimulating factor 1 acts_upstream_of_or_within ISO (MGI:3640884|PMID:10804170) MGI PMID:10804170 MGI:3640884 NCBI chrNW_004955435:13,404,236...13,423,059
Ensembl chrNW_004955435:13,404,508...13,424,247 		JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 acts_upstream_of_or_within ISO (MGI:1932625|PMID:11283268) MGI PMID:11283268 MGI:1932625 NCBI chrNW_004955583:820,893...838,515
Ensembl chrNW_004955583:820,931...841,654 		JBrowse link
G Epha2 EPH receptor A2 involved_in ISO (MGI:5284750|PMID:19321667) UniProt PMID:19321667 MGI:5284750 NCBI chrNW_004955527:2,120,447...2,151,932
Ensembl chrNW_004955527:2,120,266...2,152,781 		JBrowse link
G Etv4 ETS variant transcription factor 4 acts_upstream_of_or_within ISO (MGI:3828920|PMID:18977342)
(MGI:2667785|PMID:12871699)		 MGI PMID:12871699 PMID:18977342 MGI:2667785 MGI:3828920 NCBI chrNW_004955451:16,965,404...16,976,503
Ensembl chrNW_004955451:16,965,125...16,976,127 		JBrowse link
G Kdm5b lysine demethylase 5B acts_upstream_of_or_within ISO (MGI:5619178|PMID:24802759) MGI PMID:24802759 MGI:5619178 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (MGI:3692480|PMID:16973609) MGI PMID:16973609 MGI:3692480 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:1355063|PMID:10742104) MGI PMID:10742104 MGI:1355063 NCBI chrNW_004955408:27,323,405...27,329,484
Ensembl chrNW_004955408:27,323,360...27,329,755 		JBrowse link
G Pml PML nuclear body scaffold acts_upstream_of_or_within ISO (MGI:3839212|PMID:19261859) MGI PMID:19261859 MGI:3839212 NCBI chrNW_004955450:3,654,854...3,692,057
Ensembl chrNW_004955450:3,656,498...3,692,406 		JBrowse link
G Slc12a2 solute carrier family 12 member 2 acts_upstream_of_or_within ISO (MGI:2180693|PMID:8864124) MGI PMID:8864124 MGI:2180693 NCBI chrNW_004955415:1,138,297...1,219,241
Ensembl chrNW_004955415:1,137,327...1,219,241 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:3589531|PMID:16007215) MGI PMID:16007215 MGI:3589531 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (MGI:3608166|PMID:16222716) MGI PMID:16222716 MGI:3608166 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063 		JBrowse link
dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin acts_upstream_of_or_within ISO (MGI:3703920|PMID:17369357) MGI PMID:17369357 MGI:3703920 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088 		JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO (MGI:4422106|PMID:20131354) MGI PMID:20131354 MGI:4422106 NCBI chrNW_004955445:2,626,896...2,636,607
Ensembl chrNW_004955445:2,626,823...2,636,607 		JBrowse link
epithelial cell proliferation involved in mammary gland duct elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin acts_upstream_of_or_within ISO (MGI:3703920|PMID:17369357) MGI PMID:17369357 MGI:3703920 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088 		JBrowse link
G Esr1 estrogen receptor 1 acts_upstream_of_or_within ISO (MGI:3629536|PMID:12021201) MGI PMID:12021201 MGI:3629536 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (MGI:3576991|PMID:15647257) MGI PMID:15647257 MGI:3576991 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO (MGI:4422106|PMID:20131354) MGI PMID:20131354 MGI:4422106 NCBI chrNW_004955445:2,626,896...2,636,607
Ensembl chrNW_004955445:2,626,823...2,636,607 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
lateral sprouting involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO (MGI:2683859|PMID:14676301) MGI PMID:14676301 MGI:2683859 NCBI chrNW_004955475:7,013,960...7,192,473
Ensembl chrNW_004955475:7,013,960...7,186,069 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
mammary duct terminal end bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf1 colony stimulating factor 1 acts_upstream_of_or_within ISO (MGI:3640884|PMID:10804170) MGI PMID:10804170 MGI:3640884 NCBI chrNW_004955435:13,404,236...13,423,059
Ensembl chrNW_004955435:13,404,508...13,424,247 		JBrowse link
G Kdm5b lysine demethylase 5B acts_upstream_of_or_within ISO (MGI:5619178|PMID:24802759) MGI PMID:24802759 MGI:5619178 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088 		JBrowse link
G Mst1 macrophage stimulating 1 acts_upstream_of_or_within ISO (MGI:5614192|PMID:25049204) MGI PMID:25049204 MGI:5614192 NCBI chrNW_004955532:1,590,685...1,595,655
Ensembl chrNW_004955532:1,590,755...1,595,148 		JBrowse link
G Robo1 roundabout guidance receptor 1 acts_upstream_of_or_within ISO (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chrNW_004955407:12,593,911...13,485,723
Ensembl chrNW_004955407:13,107,235...13,487,053 		JBrowse link
G Slc12a2 solute carrier family 12 member 2 acts_upstream_of_or_within ISO (MGI:2180453|PMID:12040017) MGI PMID:12040017 MGI:2180453 NCBI chrNW_004955415:1,138,297...1,219,241
Ensembl chrNW_004955415:1,137,327...1,219,241 		JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within ISO (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908 		JBrowse link
mammary gland branching involved in pregnancy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csmd1 CUB and Sushi multiple domains 1 acts_upstream_of_or_within ISO (MGI:6369467|PMID:31604923) MGI PMID:31604923 MGI:6369467 NCBI chrNW_004955403:55,809,895...57,101,986
Ensembl chrNW_004955403:55,851,519...57,099,067 		JBrowse link
G Esr1 estrogen receptor 1 acts_upstream_of_or_within ISO (MGI:1926565|PMID:10919287) MGI PMID:10919287 MGI:1926565 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (MGI:3576991|PMID:15647257) MGI PMID:15647257 MGI:3576991 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Vdr vitamin D receptor acts_upstream_of_or_within ISO (MGI:3051725|PMID:15178742) MGI PMID:15178742 MGI:3051725 NCBI chrNW_004955500:6,745,725...6,798,052
Ensembl chrNW_004955500:6,745,678...6,798,048 		JBrowse link
mammary gland branching involved in thelarche term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin acts_upstream_of_or_within ISO (MGI:1336843|PMID:10331984), (MGI:3703920|PMID:17369357) MGI PMID:10331984 PMID:17369357 MGI:1336843 MGI:3703920 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (MGI:3576991|PMID:15647257) MGI PMID:15647257 MGI:3576991 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 acts_upstream_of_or_within ISO (MGI:1859522|PMID:11015591) MGI PMID:11015591 MGI:1859522 NCBI chrNW_004955445:10,020,916...10,085,318
Ensembl chrNW_004955445:10,024,308...10,052,472 		JBrowse link
G Phb2 prohibitin 2 acts_upstream_of_or_within ISO (MGI:3695669|PMID:17065319) MGI PMID:17065319 MGI:3695669 NCBI chrNW_004955413:4,557,969...4,563,697
Ensembl chrNW_004955413:4,558,259...4,563,582 		JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (MGI:3814777|PMID:18614704) MGI PMID:18614704 MGI:3814777 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
mammary gland bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pthlh parathyroid hormone like hormone acts_upstream_of_or_within ISO (MGI:1203302|PMID:9477327) MGI PMID:9477327 MGI:1203302 NCBI chrNW_004955505:6,834,533...6,846,909
Ensembl chrNW_004955505:6,834,533...6,847,335 		JBrowse link
mammary gland bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:2155478|PMID:11782400) MGI PMID:11782400 MGI:2155478 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:2155478|PMID:11782400) MGI PMID:11782400 MGI:2155478 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
mammary gland bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sostdc1 sclerostin domain containing 1 acts_upstream_of_or_within ISO (MGI:5319554|PMID:22509524) MGI PMID:22509524 MGI:5319554 NCBI chrNW_004955410:19,657,805...19,662,121
Ensembl chrNW_004955410:19,657,029...19,662,131 		JBrowse link
regulation of branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav3 caveolin 3 acts_upstream_of_or_within ISO (MGI:3830397|PMID:19164602) MGI PMID:19164602 MGI:3830397 NCBI chrNW_004955561:326,008...335,911
Ensembl chrNW_004955561:325,944...335,914 		JBrowse link
G Etv5 ETS variant transcription factor 5 acts_upstream_of_or_within ISO (MGI:2667785|PMID:12871699) MGI PMID:12871699 MGI:2667785 NCBI chrNW_004955420:21,503,820...21,576,539
Ensembl chrNW_004955420:21,509,248...21,576,599 		JBrowse link
G Phb2 prohibitin 2 acts_upstream_of_or_within ISO (MGI:3695669|PMID:17065319) MGI PMID:17065319 MGI:3695669 NCBI chrNW_004955413:4,557,969...4,563,697
Ensembl chrNW_004955413:4,558,259...4,563,582 		JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
tertiary branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO (MGI:2683859|PMID:14676301) MGI PMID:14676301 MGI:2683859 NCBI chrNW_004955475:7,013,960...7,192,473
Ensembl chrNW_004955475:7,013,960...7,186,069 		JBrowse link
G Pgr progesterone receptor acts_upstream_of_or_within ISO (MGI:1354852|PMID:10733525) MGI PMID:10733525 MGI:1354852 NCBI chrNW_004955412:4,643,839...4,693,478 JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (MGI:1354852|PMID:10733525) MGI PMID:10733525 MGI:1354852 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12243
    developmental process 5809
      anatomical structure morphogenesis 2567
        tube morphogenesis 856
          epithelial tube morphogenesis 380
            mammary gland duct morphogenesis 40
              branching involved in mammary gland duct morphogenesis + 28
              mammary duct terminal end bud growth 6
              mammary gland bud morphogenesis + 4
              mammary gland cord morphogenesis + 0
              mammary gland duct cavitation 0
              mammary gland duct regression in males 0
Path 2
Term Annotations click to browse term
  biological_process 12243
    developmental process 5809
      anatomical structure development 5450
        anatomical structure morphogenesis 2567
          animal organ morphogenesis 1047
            gland morphogenesis 163
              mammary gland morphogenesis 63
                mammary gland duct morphogenesis 40
                  branching involved in mammary gland duct morphogenesis + 28
                  mammary duct terminal end bud growth 6
                  mammary gland bud morphogenesis + 4
                  mammary gland cord morphogenesis + 0
                  mammary gland duct cavitation 0
                  mammary gland duct regression in males 0
paths to the root