Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:intestinal epithelial cell differentiation
go back to main search page
Accession:GO:0060575 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a columnar/cuboidal epithelial cell of the intestine.


show annotations for term's descendants           Sort by:
 
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfa2t2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in ISO (MGI:5629454|PMID:25398765) RGD PMID:25398765 MGI:5629454 NCBI chr 3:149,935,731...150,041,545
Ensembl chr 3:149,935,731...150,038,257
JBrowse link
G Cdx2 caudal type homeo box 2 involved_in ISO (MGI:5301472|PMID:22015720) RGD PMID:22015720 MGI:5301472 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9566909) RGD PMID:9566909 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gata5 GATA binding protein 5 acts_upstream_of_or_within ISO (PMID:9566909) RGD PMID:9566909 NCBI chr 3:175,701,278...175,709,465
Ensembl chr 3:175,701,280...175,709,465
JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9566909)
GO_REF:0000107
RGD
Ensembl
PMID:9566909 GO_REF:0000107 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Ptk6 protein tyrosine kinase 6 involved_in ISO (MGI:3640030|PMID:16782882) RGD PMID:16782882 MGI:3640030 NCBI chr 3:176,698,305...176,706,896
Ensembl chr 3:176,698,305...176,706,896
JBrowse link
G Sav1 salvador family WW domain containing protein 1 acts_upstream_of_or_within ISO MGI:3790763 (MGI:3785211|PMID:18369314) RGD PMID:18369314 MGI:3785211 NCBI chr 6:92,376,470...92,398,678
Ensembl chr 6:92,376,093...92,398,525
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3714051 (MGI:5002772|PMID:21383503)
Ensembl
RGD
PMID:21383503 GO_REF:0000107 MGI:5002772 NCBI chr 4:33,890,353...33,943,219
Ensembl chr 4:33,890,349...33,943,211
JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (MGI:5449145|PMID:22766025) RGD PMID:22766025 MGI:5449145 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:108015 (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Il6st interleukin 6 cytokine family signal transducer involved_in IEA
ISO
GO_REF:0000107
(MGI:5629863|PMID:25731159)
(PMID:25731159)
Ensembl
RGD
PMID:25731159 GO_REF:0000107 MGI:5629863 NCBI chr 2:44,279,199...44,319,427
Ensembl chr 2:44,289,393...44,314,944
JBrowse link
G Klf5 Kruppel-like factor 5 acts_upstream_of_or_within ISO MGI:3806635 (MGI:5471906|PMID:23266329) RGD PMID:23266329 MGI:5471906 NCBI chr15:83,703,796...83,722,921
Ensembl chr15:83,703,791...83,722,921
JBrowse link
G Mir3545 microRNA 3545 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr 6:136,704,947...136,705,061
Ensembl chr 6:136,704,947...136,705,061
JBrowse link
G Mir7-1 microRNA 7-1 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr17:6,675,016...6,675,112
Ensembl chr17:6,675,016...6,675,112
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO MGI:2177178 (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757
JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO MGI:3605483|MGI:3605621 (MGI:5014435|PMID:21670299) RGD PMID:21670299 MGI:5014435 NCBI chr20:49,464,921...49,556,623
Ensembl chr20:49,464,919...49,556,518
JBrowse link
G Spdef SAM pointed domain containing ets transcription factor acts_upstream_of_or_within ISO MGI:4410321 (MGI:4410300|PMID:19549527) RGD PMID:19549527 MGI:4410300 NCBI chr20:7,292,823...7,308,053
Ensembl chr20:7,292,824...7,307,284
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:25731159)
(MGI:5629863|PMID:25731159)
RGD PMID:25731159 MGI:5629863 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO MGI:4391656 (MGI:5498602|PMID:23726973) RGD PMID:23726973 MGI:5498602 NCBI chr 4:159,635,145...159,654,108
Ensembl chr 4:159,635,153...159,654,063
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in ISO (PMID:25731159)
(MGI:5629863|PMID:25731159)
RGD PMID:25731159 MGI:5629863 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
G Yipf6 Yip1 domain family, member 6 acts_upstream_of_or_within ISO MGI:4839074 (MGI:5437477|PMID:22802641) RGD PMID:22802641 MGI:5437477 NCBI chr  X:68,625,760...68,637,780
Ensembl chr  X:68,626,185...68,637,416
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A IEP RGD PMID:20466941 RGD:8662316 NCBI chr20:6,348,422...6,358,864
Ensembl chr20:6,351,458...6,358,864
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2384429 (MGI:4830408|PMID:20808783)
Ensembl
RGD
PMID:20808783 GO_REF:0000107 MGI:4830408 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (MGI:1349338|PMID:10564089) RGD PMID:10564089 MGI:1349338 NCBI chr 4:82,170,383...82,174,788
Ensembl chr 4:82,170,387...82,173,207
JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:1260861 RGD:2317427 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    developmental process 6765
      anatomical structure development 6191
        tube development 1220
          digestive tract development 165
            intestinal epithelial cell differentiation 25
              enterocyte differentiation 0
              interstitial cell of Cajal differentiation 0
              intestinal epithelial cell development + 18
Path 2
Term Annotations click to browse term
  biological_process 19491
    developmental process 6765
      anatomical structure development 6191
        tissue development 2073
          epithelium development 1276
            epithelial cell differentiation 711
              columnar/cuboidal epithelial cell differentiation 105
                intestinal epithelial cell differentiation 25
                  enterocyte differentiation 0
                  interstitial cell of Cajal differentiation 0
                  intestinal epithelial cell development + 18
paths to the root