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ONTOLOGY REPORT - ANNOTATIONS

Term:epithelial tube morphogenesis
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Accession:GO:0060562 term browser browse the term
Definition:The process in which the anatomical structures of a tube are generated and organized from an epithelium. Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system.

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epithelial tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Greb1l GREB1 like retinoic acid receptor coactivator acts_upstream_of_or_within ISO (PMID:29100091) MGI PMID:29100091 NCBI chrNW_004955402:9,865,934...10,204,990
Ensembl chrNW_004955402:10,104,225...10,201,479 		JBrowse link
G Prkx protein kinase cAMP-dependent X-linked catalytic subunit involved_in ISO (PMID:17980165) UniProt PMID:17980165 NCBI chrNW_004955499:2,167,252...2,227,510
Ensembl chrNW_004955499:2,167,252...2,211,911 		JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 acts_upstream_of_or_within ISO (PMID:21515572) MGI PMID:21515572 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chrNW_004955414:19,188,830...19,197,728
Ensembl chrNW_004955414:19,187,388...19,197,728 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21515572) MGI PMID:21515572 NCBI chrNW_004955417:26,401,337...26,533,297
Ensembl chrNW_004955417:26,401,363...26,533,297 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (PMID:26787558) MGI PMID:26787558 NCBI chrNW_004955455:7,739,105...7,879,489
Ensembl chrNW_004955455:7,739,463...7,882,427 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004955524:2,439,594...2,506,539
Ensembl chrNW_004955524:2,439,594...2,506,538 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622765) MGI PMID:8622765 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
blood vessel lumenization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in ISO (MGI:3056004|PMID:15466160) BHF-UCL PMID:15466160 MGI:3056004 NCBI chrNW_004955416:7,807,049...7,816,346
Ensembl chrNW_004955416:7,807,049...7,817,420 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in ISO (MGI:3056004|PMID:15466160) BHF-UCL PMID:15466160 MGI:3056004 NCBI chrNW_004955443:18,783,061...19,029,441
Ensembl chrNW_004955443:18,783,061...18,910,228 		JBrowse link
branch elongation involved in mammary gland duct branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (PMID:18614704) MGI PMID:18614704 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf1 fibroblast growth factor 1 involved_in ISO (PMID:11731227) UniProt PMID:11731227 NCBI chrNW_004955415:11,151,330...11,245,554
Ensembl chrNW_004955415:11,151,266...11,247,344 		JBrowse link
branching involved in blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO (PMID:17078885) MGI PMID:17078885 NCBI chrNW_004955449:15,587,958...15,706,432
Ensembl chrNW_004955449:15,640,230...15,708,694 		JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:1889403|PMID:10973493) DFLAT PMID:10973493 MGI:1889403 NCBI chrNW_004955410:20,428,531...20,459,482
Ensembl chrNW_004955410:20,428,546...20,456,836 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain involved_in ISO (PMID:20818663) BHF-UCL PMID:20818663 NCBI chrNW_004955404:2,196,193...2,327,324
Ensembl chrNW_004955404:2,260,029...2,326,074 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:20123964)
(PMID:19154719)
(PMID:12975353)		 BHF-UCL
MGI		 PMID:12975353 PMID:19154719 PMID:20123964 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 acts_upstream_of_or_within ISO (PMID:15626744) MGI PMID:15626744 NCBI chrNW_004955546:1,929,269...1,941,690
Ensembl chrNW_004955546:1,929,269...1,941,690 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 acts_upstream_of_or_within ISO (PMID:15626744) MGI PMID:15626744 NCBI chrNW_004955440:3,456,165...3,460,024
Ensembl chrNW_004955440:3,455,153...3,460,109 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in ISO (MGI:3056036|PMID:15466159) BHF-UCL PMID:15466159 MGI:3056036 NCBI chrNW_004955416:7,807,049...7,816,346
Ensembl chrNW_004955416:7,807,049...7,817,420 		JBrowse link
G Edn1 endothelin 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:23933587)
(PMID:7615798)		 MGI PMID:7615798 PMID:23933587 NCBI chrNW_004955465:2,287,906...2,314,945
Ensembl chrNW_004955465:2,287,798...2,314,753 		JBrowse link
G Ednra endothelin receptor type A acts_upstream_of_or_within
involved_in		 ISO (PMID:15664398)
(PMID:23933587)		 MGI PMID:15664398 PMID:23933587 NCBI chrNW_004955428:3,062,303...3,114,761
Ensembl chrNW_004955428:3,062,303...3,114,761 		JBrowse link
G Eng endoglin involved_in ISO (MGI:1337912|PMID:10348742) BHF-UCL PMID:10348742 MGI:1337912 NCBI chrNW_004955419:818,797...853,319
Ensembl chrNW_004955419:818,932...852,694 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:15996652) MGI PMID:15996652 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 acts_upstream_of_or_within ISO (PMID:14982871) MGI PMID:14982871 NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:15996652) MGI PMID:15996652 NCBI chrNW_004955453:538,066...541,415
Ensembl chrNW_004955453:538,280...540,306 		JBrowse link
G Gdf2 growth differentiation factor 2 involved_in ISO (PMID:20406889)
(MGI:4830635|PMID:20406889)		 DFLAT PMID:20406889 MGI:4830635 NCBI chrNW_004955556:2,204,841...2,210,335
Ensembl chrNW_004955556:2,205,071...2,209,055 		JBrowse link
G Gna13 G protein subunit alpha 13 acts_upstream_of_or_within ISO (PMID:15919816) MGI PMID:15919816 NCBI chrNW_004955478:4,510,932...4,552,646
Ensembl chrNW_004955478:4,515,751...4,552,784 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:15689378) MGI PMID:15689378 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO (PMID:23688497) BHF-UCL PMID:23688497 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:19154719) MGI PMID:19154719 NCBI chrNW_004955496:1,728,840...1,827,749
Ensembl chrNW_004955496:1,728,840...1,828,698 		JBrowse link
G Nfatc3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (PMID:11439183) MGI PMID:11439183 NCBI chrNW_004955484:8,433,765...8,558,005
Ensembl chrNW_004955484:8,436,330...8,526,680 		JBrowse link
G Nfatc4 nuclear factor of activated T cells 4 acts_upstream_of_or_within ISO (PMID:11439183) MGI PMID:11439183 NCBI chrNW_004955409:35,931,208...35,941,555
Ensembl chrNW_004955409:35,931,173...35,940,696 		JBrowse link
G Notch4 notch receptor 4 involved_in ISO (MGI:1934537|PMID:11344305) UniProt PMID:11344305 MGI:1934537 NCBI chrNW_004955437:658,076...679,338 JBrowse link
G Nrp1 neuropilin 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5288256|PMID:21852397), (MGI:5484470|PMID:23315162), (MGI:5562961|PMID:24401374)
(PMID:17428830)		 BHF-UCL
MGI		 PMID:17428830 PMID:21852397 PMID:23315162 PMID:24401374 MGI:5288256 MGI:5484470 MGI:5562961 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:12397115) MGI PMID:12397115 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Plxnd1 plexin D1 acts_upstream_of_or_within ISO (PMID:15239958)
(PMID:23918385)		 MGI PMID:15239958 PMID:23918385 NCBI chrNW_004955429:17,746,814...17,775,072
Ensembl chrNW_004955429:17,746,814...17,776,246 		JBrowse link
G Ppp3r1 protein phosphatase 3 regulatory subunit B, alpha acts_upstream_of_or_within ISO (PMID:11439183) MGI PMID:11439183 NCBI chrNW_004955424:16,624,214...16,690,783
Ensembl chrNW_004955424:16,623,917...16,690,783 		JBrowse link
G Rbm15 RNA binding motif protein 15 acts_upstream_of_or_within ISO (PMID:18981216) MGI PMID:18981216 NCBI chrNW_004955435:13,846,297...13,854,639
Ensembl chrNW_004955435:13,846,297...13,854,639 		JBrowse link
G Sema3e semaphorin 3E involved_in ISO (MGI:3526793|PMID:15550623) UniProt PMID:15550623 MGI:3526793 NCBI chrNW_004955410:2,732,983...2,831,220
Ensembl chrNW_004955410:2,732,996...2,831,210 		JBrowse link
G Sema5a semaphorin 5A acts_upstream_of_or_within ISO (PMID:15743826) MGI PMID:15743826 NCBI chrNW_004955504:6,343,747...6,691,945
Ensembl chrNW_004955504:6,350,866...6,762,104 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in ISO (MGI:4835126|PMID:19458075) BHF-UCL PMID:19458075 MGI:4835126 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:15936751) MGI PMID:15936751 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:18804439) MGI PMID:18804439 NCBI chrNW_004955437:9,100,546...9,109,305
Ensembl chrNW_004955437:9,098,968...9,107,057 		JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within ISO (PMID:19786569) MGI PMID:19786569 NCBI chrNW_004955445:12,308,285...12,399,012
Ensembl chrNW_004955445:12,308,285...12,399,012 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within ISO (PMID:15843414) MGI PMID:15843414 NCBI chrNW_004955460:7,794,313...7,856,906
Ensembl chrNW_004955460:7,794,313...7,856,906 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 acts_upstream_of_or_within ISO (PMID:17078885) MGI PMID:17078885 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within
involved_in		 ISO (PMID:23688497)
(PMID:23083510), (PMID:23688497)		 BHF-UCL
ComplexPortal		 PMID:23083510 PMID:23688497 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
branching involved in lymph vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfatc1 nuclear factor of activated T cells 1 acts_upstream_of_or_within ISO (PMID:19233265) MGI PMID:19233265 NCBI chrNW_004955402:62,558,392...62,674,347
Ensembl chrNW_004955402:62,558,286...62,674,457 		JBrowse link
G Tie1 tyrosine kinase with immunoglobulin like and EGF like domains 1 involved_in ISO (MGI:4439415|PMID:20223757) BHF-UCL PMID:20223757 MGI:4439415 NCBI chrNW_004955537:2,894,913...2,914,284
Ensembl chrNW_004955537:2,894,914...2,914,284 		JBrowse link
branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:15340078) MGI PMID:15340078 NCBI chrNW_004955485:8,724,375...8,846,647
Ensembl chrNW_004955485:8,724,380...8,837,741 		JBrowse link
G Csf1 colony stimulating factor 1 acts_upstream_of_or_within ISO (PMID:10804170) MGI PMID:10804170 NCBI chrNW_004955435:13,404,236...13,423,059
Ensembl chrNW_004955435:13,404,508...13,424,247 		JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 acts_upstream_of_or_within ISO (PMID:11283268) MGI PMID:11283268 NCBI chrNW_004955583:820,893...838,515
Ensembl chrNW_004955583:820,931...841,654 		JBrowse link
G Epha2 EPH receptor A2 involved_in ISO (MGI:5284750|PMID:19321667) UniProt PMID:19321667 MGI:5284750 NCBI chrNW_004955527:2,120,447...2,151,932
Ensembl chrNW_004955527:2,120,266...2,152,781 		JBrowse link
G Etv4 ETS variant transcription factor 4 acts_upstream_of_or_within ISO (PMID:18977342)
(PMID:12871699)		 MGI PMID:12871699 PMID:18977342 NCBI chrNW_004955451:16,965,404...16,976,503
Ensembl chrNW_004955451:16,965,125...16,976,127 		JBrowse link
G Kdm5b lysine demethylase 5B acts_upstream_of_or_within ISO (PMID:24802759) MGI PMID:24802759 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:16973609) MGI PMID:16973609 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19503830) MGI PMID:19503830 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:10742104) MGI PMID:10742104 NCBI chrNW_004955408:27,323,405...27,329,484
Ensembl chrNW_004955408:27,323,360...27,329,755 		JBrowse link
G Pml PML nuclear body scaffold acts_upstream_of_or_within ISO (PMID:19261859) MGI PMID:19261859 NCBI chrNW_004955450:3,654,854...3,692,057
Ensembl chrNW_004955450:3,656,498...3,692,406 		JBrowse link
G Slc12a2 solute carrier family 12 member 2 acts_upstream_of_or_within ISO (PMID:8864124) MGI PMID:8864124 NCBI chrNW_004955415:1,138,297...1,219,241
Ensembl chrNW_004955415:1,137,327...1,219,241 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:16007215) MGI PMID:16007215 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:16222716) MGI PMID:16222716 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063 		JBrowse link
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif 16 acts_upstream_of_or_within ISO (PMID:23661704) MGI PMID:23661704 NCBI chrNW_004955504:3,167,142...3,320,632
Ensembl chrNW_004955504:3,168,985...3,320,949 		JBrowse link
G Agt angiotensinogen NOT|acts_upstream_of_or_within ISO (PMID:8675666)
(PMID:12657564)		 MGI PMID:8675666 PMID:12657564 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (PMID:16672320)
(PMID:14699151)		 MGI PMID:14699151 PMID:16672320 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485 		JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:15925496) MGI PMID:15925496 NCBI chrNW_004955415:17,048,374...17,058,172
Ensembl chrNW_004955415:17,048,030...17,060,181 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:12631064)
(PMID:17522159)		 UniProt
MGI		 PMID:12631064 PMID:17522159 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Cd44 CD44 molecule (IN blood group) acts_upstream_of_or_within ISO (PMID:10926769) MGI PMID:10926769 NCBI chrNW_004955422:11,106,061...11,189,951 JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in
NOT|involved_in		 ISO PMID:15843474
(MGI:3717986|PMID:17615577)		 UniProt PMID:15843474 PMID:17615577 MGI:3717986 RGD:8554075 NCBI chrNW_004955475:11,722,514...11,725,067 JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 NOT|involved_in ISO (MGI:3717986|PMID:17615577) UniProt PMID:17615577 MGI:3717986 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:17537789) MGI PMID:17537789 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chrNW_004955414:22,331,590...22,365,761
Ensembl chrNW_004955414:22,332,059...22,351,576 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO (PMID:17435047)
(PMID:17172448)
(PMID:16105026)		 MGI PMID:16105026 PMID:17172448 PMID:17435047 NCBI chrNW_004955420:13,068,289...13,273,805
Ensembl chrNW_004955420:13,068,289...13,273,805 		JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:16937369) MGI PMID:16937369 NCBI chrNW_004955474:2,254,842...2,259,303 JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:12783782) MGI PMID:12783782 NCBI chrNW_004955444:8,336,071...8,655,041
Ensembl chrNW_004955444:8,495,530...8,655,100 		JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chrNW_004955428:15,621,333...15,812,167
Ensembl chrNW_004955428:15,622,498...15,810,896 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:12631064) UniProt PMID:12631064 NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16049111) MGI PMID:16049111 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
G Foxd1 forkhead box D1 acts_upstream_of_or_within ISO (PMID:13678594) MGI PMID:13678594 NCBI chrNW_004955425:27,158,601...27,159,447 JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in
acts_upstream_of_or_within		 ISO (MGI:81287|PMID:8657307)
(PMID:13678594), (PMID:21281623)		 UniProt
MGI		 PMID:8657307 PMID:13678594 PMID:21281623 MGI:81287 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16396903) MGI PMID:16396903 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:15925496) MGI PMID:15925496 NCBI chrNW_004955473:969,627...1,431,706
Ensembl chrNW_004955473:969,800...1,431,483 		JBrowse link
G Greb1l GREB1 like retinoic acid receptor coactivator acts_upstream_of_or_within ISO (PMID:29100091) MGI PMID:29100091 NCBI chrNW_004955402:9,865,934...10,204,990
Ensembl chrNW_004955402:10,104,225...10,201,479 		JBrowse link
G Gzf1 GDNF inducible zinc finger protein 1 acts_upstream_of_or_within ISO (PMID:14522971) MGI PMID:14522971 NCBI chrNW_004955415:30,381,153...30,391,239
Ensembl chrNW_004955415:30,384,130...30,391,298 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:11493536) MGI PMID:11493536 NCBI chrNW_004955410:28,875,780...28,879,643
Ensembl chrNW_004955410:28,877,055...28,879,465 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO (PMID:11493536) MGI PMID:11493536 NCBI chrNW_004955403:20,541,870...20,556,574 JBrowse link
G Ilk integrin linked kinase acts_upstream_of_or_within ISO (PMID:15831470) MGI PMID:15831470 NCBI chrNW_004955414:22,316,243...22,322,979
Ensembl chrNW_004955414:22,316,047...22,322,979 		JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:14568553) MGI PMID:14568553 NCBI chrNW_004955528:1,713,110...1,753,374
Ensembl chrNW_004955528:1,713,125...1,753,116 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:5050079|PMID:7909549) UniProt PMID:7909549 MGI:5050079 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (MGI:3830398|PMID:19161241) UniProt PMID:19161241 MGI:3830398 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982 		JBrowse link
G Npnt nephronectin acts_upstream_of_or_within ISO (PMID:17537792) MGI PMID:17537792 NCBI chrNW_004955496:3,321,310...3,388,625
Ensembl chrNW_004955496:3,320,946...3,388,694 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:1337742)
(PMID:16672320)		 UniProt
MGI		 PMID:1337742 PMID:16672320 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Pax8 paired box 8 involved_in ISO (PMID:1337742) UniProt PMID:1337742 NCBI chrNW_004955470:1,016,226...1,072,643
Ensembl chrNW_004955470:1,016,289...1,073,796 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:12591246) MGI PMID:12591246 NCBI chrNW_004955462:11,777,168...12,083,068
Ensembl chrNW_004955462:11,812,649...12,082,316 		JBrowse link
G Pgf placental growth factor acts_upstream_of_or_within ISO (PMID:13678594) MGI PMID:13678594 NCBI chrNW_004955523:616,196...627,055
Ensembl chrNW_004955523:616,154...627,713 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004955474:1,831,221...1,868,170
Ensembl chrNW_004955474:1,833,701...1,868,817 		JBrowse link
G Pspn persephin acts_upstream_of_or_within ISO (PMID:9491986) MGI PMID:9491986 NCBI chrNW_004955495:3,218,720...3,220,941
Ensembl chrNW_004955495:3,220,239...3,220,800 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:19809516) MGI PMID:19809516 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in
acts_upstream_of		 ISO (MGI:2447943|PMID:12482961)
(PMID:24550112)		 UniProt
MGI		 PMID:12482961 PMID:24550112 MGI:2447943 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:16396903) MGI PMID:16396903 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO (PMID:12783782) MGI PMID:12783782 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (PMID:15925496) MGI PMID:15925496 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (MGI:83252|PMID:8787755) UniProt PMID:8787755 MGI:83252 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tcf21 transcription factor 21 acts_upstream_of_or_within ISO (PMID:9507058)
(PMID:10572052)		 MGI PMID:9507058 PMID:10572052 NCBI chrNW_004955439:2,617,562...2,620,613
Ensembl chrNW_004955439:2,617,492...2,620,644 		JBrowse link
G Timeless timeless circadian regulator acts_upstream_of_or_within ISO PMID:10963667 RGD
MGI		 PMID:10963667 RGD:2308864 NCBI chrNW_004955458:3,999,143...4,029,523
Ensembl chrNW_004955458:3,997,725...4,029,766 		JBrowse link
G Tmem59l transmembrane protein 59 like involved_in ISO (PMID:32017326) MGI PMID:32017326 NCBI chrNW_004955524:2,983,699...2,988,080
Ensembl chrNW_004955524:2,981,909...2,988,080 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989 		JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (PMID:11948913) MGI PMID:11948913 NCBI chrNW_004955453:14,547,427...14,560,001
Ensembl chrNW_004955453:14,545,700...14,560,976 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:10101119)
(MGI:1333093|PMID:10101119)		 UniProt PMID:10101119 MGI:1333093 NCBI chrNW_004955476:10,464,688...10,504,473
Ensembl chrNW_004955476:10,464,616...10,504,473 		JBrowse link
branching morphogenesis of an epithelial tube term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:15831470) MGI PMID:15831470 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Casr calcium sensing receptor ISO positive regulation RGD PMID:20117086 RGD:7206840 NCBI chrNW_004955427:21,486,608...21,574,017
Ensembl chrNW_004955427:21,486,427...21,575,210 		JBrowse link
G Clic4 chloride intracellular channel 4 acts_upstream_of_or_within ISO (PMID:19197003) MGI PMID:19197003 NCBI chrNW_004955452:4,479,783...4,534,115
Ensembl chrNW_004955452:4,479,783...4,534,115 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16452165) MGI PMID:16452165 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Egf epidermal growth factor acts_upstream_of_or_within ISO (PMID:15831470) MGI PMID:15831470 NCBI chrNW_004955496:325,954...401,430
Ensembl chrNW_004955496:328,075...401,569 		JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in ISO (PMID:17959718) UniProt PMID:17959718 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO (PMID:11356025) MGI PMID:11356025 NCBI chrNW_004955469:3,134,355...3,149,177 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:9731531) MGI PMID:9731531 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16247775) MGI PMID:16247775 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:20040500) MGI PMID:20040500 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
G Igf1 insulin like growth factor 1 acts_upstream_of_or_within ISO (PMID:15059953) MGI PMID:15059953 NCBI chrNW_004955405:37,505,830...37,582,152
Ensembl chrNW_004955405:37,512,201...37,582,152 		JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO (PMID:16375885) MGI PMID:16375885 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583 		JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:14568553) MGI PMID:14568553 NCBI chrNW_004955528:1,713,110...1,753,374
Ensembl chrNW_004955528:1,713,125...1,753,116 		JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase involved_in ISO (PMID:16153003) UniProt PMID:16153003 NCBI chrNW_004955432:22,440,671...22,519,592
Ensembl chrNW_004955432:22,440,637...22,517,647 		JBrowse link
G Mgp matrix Gla protein ISO fetal lung RGD PMID:15136295 RGD:1582506 NCBI chrNW_004955413:11,614,851...11,618,090
Ensembl chrNW_004955413:11,615,078...11,618,024 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 involved_in ISO (MGI:4441259|PMID:17185389) UniProt PMID:17185389 MGI:4441259 NCBI chrNW_004955451:4,805,542...4,818,233
Ensembl chrNW_004955451:4,804,838...4,821,556 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO (PMID:15572153) MGI PMID:15572153 NCBI chrNW_004955409:37,438,924...37,448,704
Ensembl chrNW_004955409:37,440,541...37,448,437 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:15716345) MGI PMID:15716345 NCBI chrNW_004955487:9,219,528...9,224,818
Ensembl chrNW_004955487:9,219,528...9,224,818 		JBrowse link
G Nkx3-1 NK3 homeobox 1 acts_upstream_of_or_within ISO (PMID:11002344) MGI PMID:11002344 NCBI chrNW_004955403:46,807,846...46,809,924
Ensembl chrNW_004955403:46,806,178...46,836,310 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:15064243) MGI PMID:15064243 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISO (PMID:20457839) UniProt PMID:20457839 NCBI chrNW_004955414:14,365,325...14,447,470
Ensembl chrNW_004955414:14,365,157...14,450,611 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:12482949)
(MGI:5603942|PMID:24939912)		 UniProt PMID:12482949 PMID:24939912 MGI:5603942 NCBI chrNW_004955442:15,132,555...15,178,377
Ensembl chrNW_004955442:15,145,640...15,178,377 		JBrowse link
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin acts_upstream_of_positive_effect ISO (MGI:4880601|PMID:20875407) UniProt PMID:20875407 MGI:4880601 NCBI chrNW_004955411:5,988,100...6,434,369
Ensembl chrNW_004955411:5,990,316...6,432,301 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha acts_upstream_of_or_within ISO (PMID:15042703) MGI PMID:15042703 NCBI chrNW_004955422:18,076,670...18,079,859
Ensembl chrNW_004955422:18,076,670...18,079,859 		JBrowse link
G Pxn paxillin acts_upstream_of_or_within ISO (PMID:14636584) MGI PMID:14636584 NCBI chrNW_004955455:11,387,140...11,401,178
Ensembl chrNW_004955455:11,388,378...11,403,082 		JBrowse link
G Rasip1 Ras interacting protein 1 involved_in ISO (MGI:5052000|PMID:21396893) UniProt PMID:21396893 MGI:5052000 NCBI chrNW_004955559:1,830,574...1,844,107
Ensembl chrNW_004955559:1,831,123...1,843,905 		JBrowse link
G Sema5a semaphorin 5A acts_upstream_of_or_within ISO (PMID:15743826) MGI PMID:15743826 NCBI chrNW_004955504:6,343,747...6,691,945
Ensembl chrNW_004955504:6,350,866...6,762,104 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:9768363)
(PMID:15305287)
(PMID:15042696)		 MGI PMID:9768363 PMID:15042696 PMID:15305287 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Slit2 slit guidance ligand 2 involved_in ISO (PMID:18345009)
(PMID:19005219)		 UniProt PMID:18345009 PMID:19005219 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within ISO (PMID:10074434) MGI PMID:10074434 NCBI chrNW_004955404:27,349,286...27,353,706
Ensembl chrNW_004955404:27,349,519...27,353,706 		JBrowse link
G Timeless timeless circadian regulator acts_upstream_of_or_within ISO (PMID:12950082) MGI PMID:12950082 NCBI chrNW_004955458:3,999,143...4,029,523
Ensembl chrNW_004955458:3,997,725...4,029,766 		JBrowse link
G Tmem67 transmembrane protein 67 involved_in ISO (MGI:4441259|PMID:17185389) UniProt PMID:17185389 MGI:4441259 NCBI chrNW_004955417:10,097,488...10,137,959
Ensembl chrNW_004955417:10,097,472...10,138,644 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:11948913) MGI PMID:11948913 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416 		JBrowse link
bud dilation involved in lung branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:8674409) MGI PMID:8674409 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
bud elongation involved in lung branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:18367557) MGI PMID:18367557 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:21764747) MGI PMID:21764747 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16989802) MGI PMID:16989802 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 acts_upstream_of_or_within ISO (PMID:21764747) MGI PMID:21764747 NCBI chrNW_004955428:17,451,703...17,455,695
Ensembl chrNW_004955428:17,451,703...17,455,695 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within ISO (PMID:21764747) MGI PMID:21764747 NCBI chrNW_004955404:27,349,286...27,353,706
Ensembl chrNW_004955404:27,349,519...27,353,706 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO (PMID:25043473) MGI PMID:25043473 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408 		JBrowse link
bud outgrowth involved in lung branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:9740653) MGI PMID:9740653 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:9731532) MGI PMID:9731532 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 acts_upstream_of_or_within ISO (PMID:21956870) MGI PMID:21956870 NCBI chrNW_004955405:25,607,134...25,646,050
Ensembl chrNW_004955405:25,606,414...25,646,050 		JBrowse link
G Tnc tenascin C ISO RGD PMID:16928692 RGD:4889612 NCBI chrNW_004955419:12,569,620...12,662,897
Ensembl chrNW_004955419:12,569,547...12,662,958 		JBrowse link
dichotomous subdivision of terminal units involved in lung branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsh cathepsin H involved_in ISO (MGI:3722010|PMID:17500053) UniProt PMID:17500053 MGI:3722010 NCBI chrNW_004955533:39,237...54,881
Ensembl chrNW_004955533:39,284...54,837 		JBrowse link
dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin acts_upstream_of_or_within ISO (PMID:17369357) MGI PMID:17369357 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088 		JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO (PMID:20131354) MGI PMID:20131354 NCBI chrNW_004955445:2,626,896...2,636,607
Ensembl chrNW_004955445:2,626,823...2,636,607 		JBrowse link
dichotomous subdivision of terminal units involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISO (MGI:3525902|PMID:15634693) UniProt PMID:15634693 MGI:3525902 NCBI chrNW_004955425:27,158,601...27,159,447 JBrowse link
distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klhl3 kelch like family member 3 involved_in ISO (PMID:22406640), (PMID:23453970), (PMID:23576762) UniProt PMID:22406640 PMID:23453970 PMID:23576762 NCBI chrNW_004955408:32,596,497...32,719,967
Ensembl chrNW_004955408:32,596,497...32,721,059 		JBrowse link
G Wnk4 WNK lysine deficient protein kinase 4 involved_in ISO (PMID:23453970), (PMID:23576762) UniProt PMID:23453970 PMID:23576762 NCBI chrNW_004955451:16,593,840...16,606,817
Ensembl chrNW_004955451:16,594,408...16,606,410 		JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene acts_upstream_of_or_within ISO (PMID:15569713) MGI PMID:15569713 NCBI chrNW_004955546:1,221,995...1,252,147
Ensembl chrNW_004955546:1,221,995...1,253,946 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (PMID:15569713) MGI PMID:15569713 NCBI chrNW_004955413:33,660,025...33,714,649
Ensembl chrNW_004955413:33,660,022...33,712,796 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:16546160) MGI PMID:16546160 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:11076684) MGI PMID:11076684 NCBI chrNW_004955408:8,848,723...8,851,804
Ensembl chrNW_004955408:8,848,559...8,851,994 		JBrowse link
embryonic heart tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in ISO (PMID:19506109) BHF-UCL PMID:19506109 NCBI chrNW_004955449:15,587,958...15,706,432
Ensembl chrNW_004955449:15,640,230...15,708,694 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (MGI:4354447|PMID:19609448) BHF-UCL PMID:19609448 MGI:4354447 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISO (MGI:5551355|PMID:24052814) UniProt PMID:24052814 MGI:5551355 NCBI chrNW_004955555:549,921...591,978
Ensembl chrNW_004955555:548,416...591,978 		JBrowse link
G Ryr2 ryanodine receptor 2 involved_in ISO (MGI:1267127|PMID:9628868) UniProt PMID:9628868 MGI:1267127 NCBI chrNW_004955492:2,647,597...3,275,512
Ensembl chrNW_004955492:2,648,956...3,076,509 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474) BHF-UCL PMID:21305474 MGI:4946573 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO (MGI:3579960|PMID:15901664) BHF-UCL PMID:15901664 MGI:3579960 NCBI chrNW_004955460:7,794,313...7,856,906
Ensembl chrNW_004955460:7,794,313...7,856,906 		JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004955414:28,166,562...28,341,275
Ensembl chrNW_004955414:28,175,543...28,333,856 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004955559:1,450,706...1,465,947
Ensembl chrNW_004955559:1,450,706...1,465,947 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO (PMID:18332127) MGI PMID:18332127 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408 		JBrowse link
endothelial tube lumen extension term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhoa ras homolog family member A acts_upstream_of_or_within ISO (PMID:20208559) MGI PMID:20208559 NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451 		JBrowse link
G Stard13 StAR related lipid transfer domain containing 13 acts_upstream_of_or_within ISO (PMID:20208559) MGI PMID:20208559 NCBI chrNW_004955431:12,221,980...12,732,894
Ensembl chrNW_004955431:12,557,146...12,734,539 		JBrowse link
endothelial tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvrl1 activin A receptor like type 1 involved_in ISO (PMID:19592636) BHF-UCL PMID:19592636 NCBI chrNW_004955547:2,278,548...2,293,865
Ensembl chrNW_004955547:2,279,042...2,294,443 		JBrowse link
G Bsg basigin (Ok blood group) involved_in ISO (PMID:19837976) UniProt PMID:19837976 NCBI chrNW_004955495:7,148,806...7,156,296 JBrowse link
G Ccm2 CCM2 scaffold protein acts_upstream_of_or_within ISO (PMID:19151727) MGI PMID:19151727 NCBI chrNW_004955456:7,232,224...7,251,012
Ensembl chrNW_004955456:7,227,667...7,256,206 		JBrowse link
G Csnk2b casein kinase 2 beta involved_in ISO (PMID:19592636) BHF-UCL PMID:19592636 NCBI chrNW_004955437:210,541...215,725
Ensembl chrNW_004955437:210,838...219,694 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in ISO (PMID:20123964) BHF-UCL PMID:20123964 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO RGD PMID:24955809 RGD:11352686 NCBI chrNW_004955440:3,456,165...3,460,024
Ensembl chrNW_004955440:3,455,153...3,460,109 		JBrowse link
G Kdr kinase insert domain receptor ISO RGD PMID:25942475 RGD:126925211 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583 		JBrowse link
G Rhob ras homolog family member B involved_in ISO (PMID:21347332) BHF-UCL PMID:21347332 NCBI chrNW_004955469:2,964,968...2,966,998
Ensembl chrNW_004955469:2,965,041...2,965,631 		JBrowse link
epithelial cell proliferation involved in mammary gland duct elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin acts_upstream_of_or_within ISO (PMID:17369357) MGI PMID:17369357 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088 		JBrowse link
G Esr1 estrogen receptor 1 acts_upstream_of_or_within ISO (PMID:12021201) MGI PMID:12021201 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:15647257) MGI PMID:15647257 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO (PMID:20131354) MGI PMID:20131354 NCBI chrNW_004955445:2,626,896...2,636,607
Ensembl chrNW_004955445:2,626,823...2,636,607 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:17898001) MGI PMID:17898001 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
epithelial cell proliferation involved in renal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 acts_upstream_of_or_within ISO (PMID:24680895) MGI PMID:24680895 NCBI chrNW_004955476:6,611,102...6,629,294
Ensembl chrNW_004955476:6,610,103...6,629,264 		JBrowse link
G Lgr5 leucine rich repeat containing G protein-coupled receptor 5 acts_upstream_of_or_within ISO (PMID:24680895) MGI PMID:24680895 NCBI chrNW_004955405:11,507,083...11,574,504
Ensembl chrNW_004955405:11,507,083...11,574,569 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (MGI:4440396|PMID:20181743) UniProt PMID:20181743 MGI:4440396 NCBI chrNW_004955418:22,537,388...22,701,434
Ensembl chrNW_004955418:22,537,285...22,701,434 		JBrowse link
G Mtss1 MTSS I-BAR domain containing 1 involved_in ISO (MGI:4440396|PMID:20181743) UniProt PMID:20181743 MGI:4440396 NCBI chrNW_004955540:3,204,357...3,346,026
Ensembl chrNW_004955540:3,204,367...3,346,026 		JBrowse link
epithelial tube branching involved in lung morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:8674409) RGD
MGI		 PMID:8674409 PMID:8769111 RGD:2306315 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:18533146)
(PMID:18231602)		 MGI PMID:18231602 PMID:18533146 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Ctsd cathepsin D NOT|involved_in ISO (MGI:3722010|PMID:17500053) UniProt PMID:17500053 MGI:3722010 NCBI chrNW_004955422:13,576,315...13,584,267
Ensembl chrNW_004955422:13,576,202...13,584,298 		JBrowse link
G Ctsz cathepsin Z involved_in ISO (MGI:3722010|PMID:17500053) UniProt PMID:17500053 MGI:3722010 NCBI chrNW_004955445:586,901...597,753
Ensembl chrNW_004955445:586,902...597,753 		JBrowse link
G Dag1 dystroglycan 1 acts_upstream_of_or_within ISO (PMID:11798066) MGI PMID:11798066 NCBI chrNW_004955532:1,446,553...1,465,310
Ensembl chrNW_004955532:1,397,900...1,466,312 		JBrowse link
G Dlg5 discs large MAGUK scaffold protein 5 acts_upstream_of_or_within ISO (PMID:23466739) MGI PMID:23466739 NCBI chrNW_004955437:14,510,488...14,628,768
Ensembl chrNW_004955437:14,510,488...14,628,768 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 acts_upstream_of_or_within ISO (PMID:26371508) MGI PMID:26371508 NCBI chrNW_004955417:10,813,831...10,881,238
Ensembl chrNW_004955417:10,813,593...10,882,921 		JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 acts_upstream_of_or_within ISO (PMID:26371508) MGI PMID:26371508 NCBI chrNW_004955484:8,426,453...8,433,902
Ensembl chrNW_004955484:8,426,453...8,433,893 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:28859094) MGI PMID:28859094 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:9784490)
(PMID:9916808)
(PMID:17560563)
(PMID:15800000)
(PMID:16169547), (PMID:16375885), (PMID:9428423)		 MGI PMID:9428423 PMID:9784490 PMID:9916808 PMID:15800000 PMID:16169547 More... NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:24058167) MGI PMID:24058167 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:15668254) MGI PMID:15668254 NCBI chrNW_004955409:23,598,127...23,599,827
Ensembl chrNW_004955409:23,598,127...23,599,461 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:15668254) MGI PMID:15668254 NCBI chrNW_004955415:29,982,940...29,987,093
Ensembl chrNW_004955415:29,982,940...29,986,255 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11493558) MGI PMID:11493558 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Hhip hedgehog interacting protein acts_upstream_of_or_within ISO (PMID:12569124) MGI PMID:12569124 NCBI chrNW_004955428:657,918...745,255
Ensembl chrNW_004955428:657,900...745,250 		JBrowse link
G Hmga2 high mobility group AT-hook 2 acts_upstream_of_or_within ISO (PMID:24661562) MGI PMID:24661562 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within ISO (PMID:9441679) MGI PMID:9441679 NCBI chrNW_004955410:28,835,795...28,838,244
Ensembl chrNW_004955410:28,834,127...28,838,244 		JBrowse link
G Kras KRAS proto-oncogene, GTPase acts_upstream_of_or_within ISO (PMID:24058167) MGI PMID:24058167 NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO (PMID:11798066), (PMID:1907584) MGI PMID:1907584 PMID:11798066 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in ISO (PMID:8675988) UniProt PMID:8675988 NCBI chrNW_004955409:24,612,490...24,616,360
Ensembl chrNW_004955409:24,612,635...24,616,430 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO (PMID:18256198) MGI PMID:18256198 NCBI chrNW_004955417:30,643,554...30,704,497
Ensembl chrNW_004955417:30,643,554...30,704,497 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10500184), (PMID:9731532) RGD
MGI		 PMID:8769111 PMID:9731532 PMID:10500184 RGD:2306315 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:18374910) MGI PMID:18374910 NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:24058167) MGI PMID:24058167 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:5805984|PMID:27720610) UniProt PMID:27720610 MGI:5805984 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639 		JBrowse link
G Tmem67 transmembrane protein 67 involved_in ISO (MGI:5648757|PMID:26035863) UniProt PMID:26035863 MGI:5648757 NCBI chrNW_004955417:10,097,488...10,137,959
Ensembl chrNW_004955417:10,097,472...10,138,644 		JBrowse link
epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Podxl podocalyxin like involved_in ISO (PMID:15814834) UniProt PMID:15814834 NCBI chrNW_004955410:36,191,797...36,239,970 JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chrNW_004955417:27,520,420...27,525,907 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplnr apelin receptor involved_in ISO (MGI:5584055|PMID:23603510) BHF-UCL PMID:23603510 MGI:5584055 NCBI chrNW_004955511:2,321,445...2,324,417
Ensembl chrNW_004955511:2,322,920...2,324,068 		JBrowse link
G Arl13b ADP ribosylation factor like GTPase 13B acts_upstream_of_or_within ISO (PMID:22554696) MGI PMID:22554696 NCBI chrNW_004955407:3,402,214...3,477,839
Ensembl chrNW_004955407:3,402,908...3,460,105 		JBrowse link
G Asb2 ankyrin repeat and SOCS box containing 2 involved_in ISO (MGI:6717247|PMID:32179481) UniProt PMID:32179481 MGI:6717247 NCBI chrNW_004955438:16,005,570...16,041,668
Ensembl chrNW_004955438:16,005,570...16,042,115 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004955414:17,444,299...17,557,912
Ensembl chrNW_004955414:17,444,515...17,558,245 		JBrowse link
G Ccdc103 coiled-coil domain containing 103 involved_in ISO (PMID:22581229) BHF-UCL PMID:22581229 NCBI chrNW_004955451:17,690,148...17,693,285
Ensembl chrNW_004955451:17,690,368...17,693,285 		JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004955420:9,689,076...9,727,806
Ensembl chrNW_004955420:9,690,295...9,727,835 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004955506:2,783,837...2,840,248
Ensembl chrNW_004955506:2,784,548...2,838,026 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:15750185) MGI PMID:15750185 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO (PMID:23742838) MGI PMID:23742838 NCBI chrNW_004955442:13,843,952...13,890,082
Ensembl chrNW_004955442:13,842,784...13,885,860 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:2661305|PMID:12730124) BHF-UCL PMID:12730124 MGI:2661305 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604 		JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944400), (PMID:19944405) BHF-UCL PMID:19944400 PMID:19944405 NCBI chrNW_004955564:132,497...149,399
Ensembl chrNW_004955564:132,760...149,399 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO (MGI:5439040|PMID:22841628) BHF-UCL PMID:22841628 MGI:5439040 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO (MGI:5439040|PMID:22841628) BHF-UCL PMID:22841628 MGI:5439040 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996 		JBrowse link
G Eng endoglin involved_in ISO (MGI:1337912|PMID:10348742), (MGI:4368063|PMID:19703439) BHF-UCL PMID:10348742 PMID:19703439 MGI:1337912 MGI:4368063 NCBI chrNW_004955419:818,797...853,319
Ensembl chrNW_004955419:818,932...852,694 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:10411502) MGI PMID:10411502 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chrNW_004955414:19,188,830...19,197,728
Ensembl chrNW_004955414:19,187,388...19,197,728 		JBrowse link
G Foxh1 forkhead box H1 involved_in ISO (MGI:3055632|PMID:15363409) BHF-UCL PMID:15363409 MGI:3055632 NCBI chrNW_004955454:3,094,015...3,096,060
Ensembl chrNW_004955454:3,094,033...3,095,512 		JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (MGI:3052615|PMID:15310850) BHF-UCL PMID:15310850 MGI:3052615 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267 		JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:9486664) MGI PMID:9486664 NCBI chrNW_004955436:3,612,533...3,618,095
Ensembl chrNW_004955436:3,612,533...3,618,095 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:9500551) MGI PMID:9500551 NCBI chrNW_004955408:8,848,723...8,851,804
Ensembl chrNW_004955408:8,848,559...8,851,994 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:9171826) MGI PMID:9171826 NCBI chrNW_004955403:33,478,034...33,481,613
Ensembl chrNW_004955403:33,478,924...33,481,608 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:14659802) MGI PMID:14659802 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:18930042) MGI PMID:18930042 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004955445:13,542,726...13,580,204
Ensembl chrNW_004955445:13,543,804...13,580,204 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO (PMID:17027958) MGI PMID:17027958 NCBI chrNW_004955427:8,814,298...8,871,671
Ensembl chrNW_004955427:8,814,298...8,871,720 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO (MGI:5142377|PMID:11517919) BHF-UCL PMID:11517919 MGI:5142377 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) MGI PMID:25463925 NCBI chrNW_004955422:18,201,243...18,308,163
Ensembl chrNW_004955422:18,200,758...18,308,163 		JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:10330409) MGI PMID:10330409 NCBI chrNW_004955408:4,072,823...4,115,975
Ensembl chrNW_004955408:4,069,639...4,115,998 		JBrowse link
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within ISO (PMID:12522123) MGI PMID:12522123 NCBI chrNW_004955485:9,003,329...9,005,987
Ensembl chrNW_004955485:9,003,329...9,005,989 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (MGI:3830899|PMID:16680724) UniProt PMID:16680724 MGI:3830899 NCBI chrNW_004955418:22,537,388...22,701,434
Ensembl chrNW_004955418:22,537,285...22,701,434 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004955402:10,392,308...10,502,576
Ensembl chrNW_004955402:10,392,308...10,502,576 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO (PMID:16510504)
(PMID:7628699), (PMID:9192865)		 MGI PMID:7628699 PMID:9192865 PMID:16510504 NCBI chrNW_004955408:25,833,649...25,836,673
Ensembl chrNW_004955408:25,832,683...25,836,840 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:16496285) MGI PMID:16496285 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:2661305|PMID:12730124) BHF-UCL PMID:12730124 MGI:2661305 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
G Notch2 notch receptor 2 involved_in ISO (MGI:2661305|PMID:12730124) BHF-UCL PMID:12730124 MGI:2661305 NCBI chrNW_004955568:1,660,357...1,812,285
Ensembl chrNW_004955568:1,660,731...1,809,173 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO (PMID:17884984) MGI PMID:17884984 NCBI chrNW_004955424:12,424,984...12,431,562 JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931), (PMID:20007846) BHF-UCL PMID:18371931 PMID:20007846 NCBI chrNW_004955501:5,799,879...5,837,022
Ensembl chrNW_004955501:5,799,879...5,837,022 		JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:17573777) MGI PMID:17573777 NCBI chrNW_004955415:26,825,284...26,843,438
Ensembl chrNW_004955415:26,825,284...26,843,438 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) BHF-UCL PMID:21719175 NCBI chrNW_004955474:1,831,221...1,868,170
Ensembl chrNW_004955474:1,833,701...1,868,817 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISO (MGI:5142377|PMID:11517919)
(PMID:10411502), (PMID:10500184)		 BHF-UCL
MGI		 PMID:10411502 PMID:10500184 PMID:11517919 MGI:5142377 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (MGI:5142377|PMID:11517919) BHF-UCL PMID:11517919 MGI:5142377 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 ISO (MGI:3716378|PMID:17655922)
(PMID:17610846)		 UniProt
MGI		 PMID:17610846 PMID:17655922 MGI:3716378 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:15929941) MGI PMID:15929941 NCBI chrNW_004955437:9,100,546...9,109,305
Ensembl chrNW_004955437:9,098,968...9,107,057 		JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004955464:11,213,265...11,288,648
Ensembl chrNW_004955464:11,228,667...11,289,648 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:16155214) MGI PMID:16155214 NCBI chrNW_004955485:7,805,244...7,925,414
Ensembl chrNW_004955485:7,808,131...7,925,677 		JBrowse link
G Tbx20 T-box transcription factor 20 involved_in
acts_upstream_of_or_within		 ISO (MGI:3604925|PMID:15843409)
(PMID:15901664)
(PMID:15843407)		 BHF-UCL
MGI		 PMID:15843407 PMID:15843409 PMID:15901664 MGI:3604925 NCBI chrNW_004955460:7,794,313...7,856,906
Ensembl chrNW_004955460:7,794,313...7,856,906 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:18723448)
(PMID:17460765)		 MGI PMID:17460765 PMID:18723448 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (MGI:3801267|PMID:17050629) BHF-UCL PMID:17050629 MGI:3801267 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004955482:5,404,739...5,415,243
Ensembl chrNW_004955482:5,404,739...5,415,243 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 involved_in ISO (MGI:2157686|PMID:11440971) UniProt PMID:11440971 MGI:2157686 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:16291790) MGI PMID:16291790 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:9354794)
(PMID:16496285)
(PMID:15384171)		 BHF-UCL
MGI		 PMID:9354794 PMID:15384171 PMID:16496285 NCBI chrNW_004955489:7,560,684...7,571,739
Ensembl chrNW_004955489:7,560,684...7,571,892 		JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004955482:6,774,021...6,885,113
Ensembl chrNW_004955482:6,774,059...6,887,171 		JBrowse link
lateral sprouting involved in lung morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (PMID:20223754) MGI PMID:20223754 NCBI chrNW_004955413:30,455,194...30,561,124
Ensembl chrNW_004955413:30,457,030...30,561,124 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:20223754) MGI PMID:20223754 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
lateral sprouting involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO (PMID:14676301) MGI PMID:14676301 NCBI chrNW_004955475:7,013,960...7,192,473
Ensembl chrNW_004955475:7,013,960...7,186,069 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:17898001) MGI PMID:17898001 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:19686689)
(PMID:19805295)		 MGI PMID:19686689 PMID:19805295 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO (PMID:19686689) MGI PMID:19686689 NCBI chrNW_004955432:22,988,208...23,024,530
Ensembl chrNW_004955432:22,984,170...23,027,705 		JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO (PMID:19686689) MGI PMID:19686689 NCBI chrNW_004955435:15,948,262...15,962,958
Ensembl chrNW_004955435:15,948,262...15,962,958 		JBrowse link
mammary duct terminal end bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf1 colony stimulating factor 1 acts_upstream_of_or_within ISO (PMID:10804170) MGI PMID:10804170 NCBI chrNW_004955435:13,404,236...13,423,059
Ensembl chrNW_004955435:13,404,508...13,424,247 		JBrowse link
G Kdm5b lysine demethylase 5B acts_upstream_of_or_within ISO (PMID:24802759) MGI PMID:24802759 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088 		JBrowse link
G Mst1 macrophage stimulating 1 acts_upstream_of_or_within ISO (PMID:25049204) MGI PMID:25049204 NCBI chrNW_004955532:1,590,685...1,595,655
Ensembl chrNW_004955532:1,590,755...1,595,148 		JBrowse link
G Robo1 roundabout guidance receptor 1 acts_upstream_of_or_within ISO (PMID:16439476) MGI PMID:16439476 NCBI chrNW_004955407:12,593,911...13,485,723
Ensembl chrNW_004955407:13,107,235...13,487,053 		JBrowse link
G Slc12a2 solute carrier family 12 member 2 acts_upstream_of_or_within ISO (PMID:12040017) MGI PMID:12040017 NCBI chrNW_004955415:1,138,297...1,219,241
Ensembl chrNW_004955415:1,137,327...1,219,241 		JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within ISO (PMID:16439476) MGI PMID:16439476 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908 		JBrowse link
mammary gland branching involved in pregnancy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csmd1 CUB and Sushi multiple domains 1 acts_upstream_of_or_within ISO (PMID:31604923) MGI PMID:31604923 NCBI chrNW_004955403:55,809,895...57,101,986
Ensembl chrNW_004955403:55,851,519...57,099,067 		JBrowse link
G Esr1 estrogen receptor 1 acts_upstream_of_or_within ISO (PMID:10919287) MGI PMID:10919287 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:15647257) MGI PMID:15647257 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Vdr vitamin D receptor acts_upstream_of_or_within ISO (PMID:15178742) MGI PMID:15178742 NCBI chrNW_004955500:6,745,725...6,798,052
Ensembl chrNW_004955500:6,745,678...6,798,048 		JBrowse link
mammary gland branching involved in thelarche term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin acts_upstream_of_or_within ISO (PMID:10331984), (PMID:17369357) MGI PMID:10331984 PMID:17369357 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:15647257) MGI PMID:15647257 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 acts_upstream_of_or_within ISO (PMID:11015591) MGI PMID:11015591 NCBI chrNW_004955445:10,020,916...10,085,318
Ensembl chrNW_004955445:10,024,308...10,052,472 		JBrowse link
G Phb2 prohibitin 2 acts_upstream_of_or_within ISO (PMID:17065319) MGI PMID:17065319 NCBI chrNW_004955413:4,557,969...4,563,697
Ensembl chrNW_004955413:4,558,259...4,563,582 		JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (PMID:18614704) MGI PMID:18614704 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:17898001) MGI PMID:17898001 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
mammary gland bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pthlh parathyroid hormone like hormone acts_upstream_of_or_within ISO (PMID:9477327) MGI PMID:9477327 NCBI chrNW_004955505:6,834,533...6,846,909
Ensembl chrNW_004955505:6,834,533...6,847,335 		JBrowse link
mammary gland bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:11782400) MGI PMID:11782400 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:11782400) MGI PMID:11782400 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
mammary gland bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sostdc1 sclerostin domain containing 1 acts_upstream_of_or_within ISO (PMID:22509524) MGI PMID:22509524 NCBI chrNW_004955410:19,657,805...19,662,121
Ensembl chrNW_004955410:19,657,029...19,662,131 		JBrowse link
mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:11783999) MGI PMID:11783999 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:19503830) MGI PMID:19503830 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19503830) MGI PMID:19503830 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 acts_upstream_of_or_within ISO (PMID:12198239) MGI PMID:12198239 NCBI chrNW_004955415:10,494,704...10,585,778
Ensembl chrNW_004955415:10,494,640...10,586,221 		JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO (PMID:16439476) MGI PMID:16439476 NCBI chrNW_004955467:7,795,175...7,991,597
Ensembl chrNW_004955467:7,794,735...7,991,695 		JBrowse link
G Perp p53 apoptosis effector related to PMP22 involved_in ISO (MGI:6765017|PMID:22515648) UniProt PMID:22515648 MGI:6765017 NCBI chrNW_004955436:21,425,321...21,430,780
Ensembl chrNW_004955436:21,417,332...21,431,312 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:10529434) MGI PMID:10529434 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622 		JBrowse link
G Scrib scribble planar cell polarity protein involved_in ISO (MGI:4359580|PMID:19041750) UniProt PMID:19041750 MGI:4359580 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098 		JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within ISO (PMID:16439476) MGI PMID:16439476 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908 		JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:20040500) MGI PMID:20040500 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416 		JBrowse link
mesonephric duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:11180950) MGI PMID:11180950 NCBI chrNW_004955473:969,627...1,431,706
Ensembl chrNW_004955473:969,800...1,431,483 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390 		JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
metanephric distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004955442:15,132,555...15,178,377
Ensembl chrNW_004955442:15,145,640...15,178,377 		JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Pax8 paired box 8 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004955470:1,016,226...1,072,643
Ensembl chrNW_004955470:1,016,289...1,073,796 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:21212101) MGI PMID:21212101 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:21212101) MGI PMID:21212101 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
metanephric nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (MGI:3056024|PMID:15465493) UniProt PMID:15465493 MGI:3056024 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (MGI:3056024|PMID:15465493) UniProt PMID:15465493 MGI:3056024 NCBI chrNW_004955486:8,700,212...8,701,581
Ensembl chrNW_004955486:8,700,162...8,701,748 		JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in ISO (MGI:5006869|PMID:21523854) UniProt PMID:21523854 MGI:5006869 NCBI chrNW_004955476:6,611,102...6,629,294
Ensembl chrNW_004955476:6,610,103...6,629,264 		JBrowse link
metanephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:21350016) MGI PMID:21350016 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:21350016) MGI PMID:21350016 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416 		JBrowse link
negative regulation of branching involved in lung morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnf tumor necrosis factor involved_in ISO (PMID:17350185) UniProt PMID:17350185 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700 		JBrowse link
negative regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 ISO (MGI:3525902|PMID:15634693)
(PMID:21281623)
(PMID:12141440)		 UniProt
MGI		 PMID:12141440 PMID:15634693 PMID:21281623 MGI:3525902 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Tacstd2 tumor associated calcium signal transducer 2 involved_in ISO (MGI:5315060|PMID:22194864) UniProt PMID:22194864 MGI:5315060 NCBI chrNW_004955464:1,282,989...1,284,785 JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
negative regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3039059|PMID:15042700) BHF-UCL PMID:15042700 MGI:3039059 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639 		JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19056682) MGI PMID:19056682 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
nephric duct elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:3613206|PMID:16216236) UniProt PMID:16216236 MGI:3613206 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
nephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO (PMID:10021330) UniProt PMID:10021330 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3611949|PMID:16319112) UniProt PMID:16319112 MGI:3611949 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:19913010) MGI PMID:19913010 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:2445273|PMID:12435636) UniProt PMID:12435636 MGI:2445273 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
nephric duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efnb2 ephrin B2 acts_upstream_of_or_within ISO (PMID:25139858) MGI PMID:25139858 NCBI chrNW_004955404:5,000,906...5,030,068
Ensembl chrNW_004955404:5,000,906...5,030,126 		JBrowse link
G Epha4 EPH receptor A4 acts_upstream_of_or_within ISO (PMID:25139858) MGI PMID:25139858 NCBI chrNW_004955453:12,099,800...12,240,199
Ensembl chrNW_004955453:12,099,757...12,240,199 		JBrowse link
G Epha7 EPH receptor A7 acts_upstream_of_or_within ISO (PMID:25139858) MGI PMID:25139858 NCBI chrNW_004955411:19,652,146...19,815,418
Ensembl chrNW_004955411:19,650,515...19,815,512 		JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:3613206|PMID:16216236) UniProt PMID:16216236 MGI:3613206 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:17537789) MGI PMID:17537789 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (PMID:11948913) MGI PMID:11948913 NCBI chrNW_004955453:14,547,427...14,560,001
Ensembl chrNW_004955453:14,545,700...14,560,976 		JBrowse link
nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:19543268) MGI PMID:19543268 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416 		JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Luzp1 leucine zipper protein 1 acts_upstream_of_or_within ISO (PMID:18801334) MGI PMID:18801334 NCBI chrNW_004955452:3,105,827...3,188,762
Ensembl chrNW_004955452:3,109,663...3,189,416 		JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chrNW_004955411:450,674...557,213
Ensembl chrNW_004955411:450,674...558,650 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:10328919) MGI PMID:10328919 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cecr2 cat eye syndrome chromosome region, candidate 2 acts_upstream_of_or_within ISO (PMID:21246654) MGI PMID:21246654 NCBI chrNW_004955454:5,581,985...5,643,685
Ensembl chrNW_004955454:5,581,981...5,640,712 		JBrowse link
G Cfl1 cofilin 1 acts_upstream_of_or_within ISO (PMID:15649475) MGI PMID:15649475 NCBI chrNW_004955422:19,479,181...19,482,571
Ensembl chrNW_004955422:19,479,181...19,482,571 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004955524:2,439,594...2,506,539
Ensembl chrNW_004955524:2,439,594...2,506,538 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628 		JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:16423343) MGI PMID:16423343 NCBI chrNW_004955415:26,825,284...26,843,438
Ensembl chrNW_004955415:26,825,284...26,843,438 		JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:9883720) MGI PMID:9883720 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:9883720) MGI PMID:9883720 NCBI chrNW_004955406:18,435,984...18,527,967
Ensembl chrNW_004955406:18,437,672...18,527,698 		JBrowse link
G Adm adrenomedullin acts_upstream_of_or_within ISO (PMID:16981008) MGI PMID:16981008 NCBI chrNW_004955414:25,951,473...25,953,593
Ensembl chrNW_004955414:25,951,349...25,953,645 		JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO (PMID:11504943), (PMID:9216040) MGI PMID:9216040 PMID:11504943 NCBI chrNW_004955405:34,619,780...34,693,616
Ensembl chrNW_004955405:34,623,267...34,693,677 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO (PMID:11044403) MGI PMID:11044403 NCBI chrNW_004955574:915,604...984,744
Ensembl chrNW_004955574:915,325...984,744 		JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (PMID:23129809) MGI PMID:23129809 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:16170314) MGI PMID:16170314 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719 		JBrowse link
G Bcl10 BCL10 immune signaling adaptor involved_in ISO (MGI:1930354|PMID:11163238) UniProt PMID:11163238 MGI:1930354 NCBI chrNW_004955423:8,710,231...8,720,530
Ensembl chrNW_004955423:8,709,890...8,722,050 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:19850029) MGI PMID:19850029 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Brd2 bromodomain containing 2 acts_upstream_of_or_within ISO (PMID:19362612) MGI PMID:19362612 NCBI chrNW_004955437:1,584,890...1,592,486
Ensembl chrNW_004955437:1,584,479...1,592,826 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO (PMID:24947469) MGI PMID:24947469 NCBI chrNW_004955480:8,404,239...8,514,792
Ensembl chrNW_004955480:8,400,284...8,514,736 		JBrowse link
G Cecr2 cat eye syndrome chromosome region, candidate 2 acts_upstream_of_or_within ISO (PMID:20589882)
(PMID:21246654)
(PMID:15640247)		 MGI PMID:15640247 PMID:20589882 PMID:21246654 NCBI chrNW_004955454:5,581,985...5,643,685
Ensembl chrNW_004955454:5,581,981...5,640,712 		JBrowse link
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:2667273|PMID:12842012)
(PMID:17229766)		 UniProt
MGI		 PMID:12842012 PMID:17229766 MGI:2667273 NCBI chrNW_004955413:30,455,194...30,561,124
Ensembl chrNW_004955413:30,457,030...30,561,124 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:12149478) MGI PMID:12149478 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO (PMID:23742838) MGI PMID:23742838 NCBI chrNW_004955442:13,843,952...13,890,082
Ensembl chrNW_004955442:13,842,784...13,885,860 		JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISO (MGI:3029622|PMID:14966286) UniProt PMID:14966286 MGI:3029622 NCBI chrNW_004955476:11,398,187...11,422,633
Ensembl chrNW_004955476:11,398,448...11,423,654 		JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (PMID:15710412) MGI PMID:15710412 NCBI chrNW_004955463:3,599,415...3,981,187
Ensembl chrNW_004955463:3,598,985...3,990,849 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (PMID:12421720) MGI PMID:12421720 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996 		JBrowse link
G Enah ENAH actin regulator acts_upstream_of_or_within ISO (PMID:15371503)
(PMID:10069337)		 MGI PMID:10069337 PMID:15371503 NCBI chrNW_004955520:310,482...374,800
Ensembl chrNW_004955520:308,070...371,922 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO (PMID:21840926)
(PMID:19877275)
(MGI:4438317|PMID:19767740), (MGI:5296277|PMID:21840926)		 UniProt
MGI		 PMID:19767740 PMID:19877275 PMID:21840926 MGI:4438317 MGI:5296277 NCBI chrNW_004955559:1,112,670...1,117,620
Ensembl chrNW_004955559:1,112,855...1,117,413 		JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO (PMID:16495441) MGI PMID:16495441 NCBI chrNW_004955403:50,899,658...50,959,077
Ensembl chrNW_004955403:50,899,523...50,959,071 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO (PMID:16495441) MGI PMID:16495441 NCBI chrNW_004955417:27,465,730...27,493,752
Ensembl chrNW_004955417:27,465,701...27,494,790 		JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within ISO (PMID:22405651) MGI PMID:22405651 NCBI chrNW_004955423:2,195,428...2,233,389
Ensembl chrNW_004955423:2,195,423...2,232,706 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:4835348|PMID:20654612), (MGI:4867118|PMID:20978075)
(PMID:21262862)		 UniProt
MGI		 PMID:20654612 PMID:20978075 PMID:21262862 MGI:4835348 MGI:4867118 NCBI chrNW_004955417:26,401,337...26,533,297
Ensembl chrNW_004955417:26,401,363...26,533,297 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 involved_in ISO (MGI:3689640|PMID:16949565), (MGI:4835348|PMID:20654612) UniProt PMID:16949565 PMID:20654612 MGI:3689640 MGI:4835348 NCBI chrNW_004955452:4,125,792...4,159,699
Ensembl chrNW_004955452:4,128,269...4,160,683 		JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:3714713|PMID:17442300)
(PMID:15755804), (PMID:9636176)		 UniProt
MGI		 PMID:9636176 PMID:15755804 PMID:17442300 MGI:3714713 NCBI chrNW_004955409:29,373,572...29,470,623
Ensembl chrNW_004955409:29,373,572...29,470,623 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:18930042) MGI PMID:18930042 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO (PMID:17027958) MGI PMID:17027958 NCBI chrNW_004955427:8,814,298...8,871,671
Ensembl chrNW_004955427:8,814,298...8,871,720 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (PMID:17325035) MGI PMID:17325035 NCBI chrNW_004955451:16,192,228...16,197,103
Ensembl chrNW_004955451:16,191,186...16,197,574 		JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) MGI PMID:25463925 NCBI chrNW_004955422:18,201,243...18,308,163
Ensembl chrNW_004955422:18,200,758...18,308,163 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:22949634) MGI PMID:22949634 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832 		JBrowse link
G Kif20b kinesin family member 20B acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004955425:3,261,269...3,313,891
Ensembl chrNW_004955425:3,261,450...3,308,416 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:11719201) MGI PMID:11719201 NCBI chrNW_004955419:3,999,364...4,019,543
Ensembl chrNW_004955419:3,998,242...4,018,875 		JBrowse link
G Lias lipoic acid synthetase acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004955443:7,889,274...7,907,560
Ensembl chrNW_004955443:7,889,467...7,907,437 		JBrowse link
G Lmo4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 ISO (MGI:3689640|PMID:16949565)
(PMID:15691703)
(PMID:14966285)		 UniProt
MGI		 PMID:14966285 PMID:15691703 PMID:16949565 MGI:3689640 NCBI chrNW_004955423:6,849,542...6,865,928
Ensembl chrNW_004955423:6,849,555...6,866,137 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISO (MGI:5603707|PMID:24639464) UniProt PMID:24639464 MGI:5603707 NCBI chrNW_004955449:5,155,109...5,314,886
Ensembl chrNW_004955449:5,160,946...5,314,948 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:10545599)
(PMID:19653321)
(PMID:15469977)
(PMID:19056682)		 MGI PMID:10545599 PMID:15469977 PMID:19056682 PMID:19653321 PMID:19795512 MGI:61254 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20630950) MGI PMID:20630950 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:23454480)
(PMID:19776033)		 MGI PMID:19776033 PMID:23454480 NCBI chrNW_004955451:4,805,542...4,818,233
Ensembl chrNW_004955451:4,804,838...4,821,556 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5503248|PMID:23704330) BHF-UCL PMID:23704330 MGI:5503248 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in ISO (MGI:5468075|PMID:23267094) BHF-UCL PMID:23267094 MGI:5468075 NCBI chrNW_004955439:10,432,732...10,621,991
Ensembl chrNW_004955439:10,438,883...10,621,768 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO (PMID:25855017), (PMID:29222906) BHF-UCL PMID:25855017 PMID:29222906 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:16712836) MGI PMID:16712836 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740 		JBrowse link
G Opa1 OPA1 mitochondrial dynamin like GTPase acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004955420:14,927,490...15,007,082
Ensembl chrNW_004955420:14,923,575...15,007,081 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004955453:11,463,407...11,558,001
Ensembl chrNW_004955453:11,463,379...11,558,006 		JBrowse link
G Pfn1 profilin 1 acts_upstream_of_or_within ISO (PMID:10069337) MGI PMID:10069337 NCBI chrNW_004955467:10,357,838...10,360,651
Ensembl chrNW_004955467:10,357,838...10,360,651 		JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chrNW_004955452:7,505,647...7,593,302
Ensembl chrNW_004955452:7,532,966...7,596,546 		JBrowse link
G Plxnb2 plexin B2 involved_in ISO (MGI:3712712|PMID:17554007) UniProt PMID:17554007 MGI:3712712 NCBI chrNW_004955413:33,297,617...33,314,371
Ensembl chrNW_004955413:33,298,317...33,309,961 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:21901791)
(PMID:25190059)		 UniProt
MGI		 PMID:21901791 PMID:25190059 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO (PMID:22007132) MGI PMID:22007132 NCBI chrNW_004955415:32,794,172...32,807,944
Ensembl chrNW_004955415:32,793,718...32,812,930 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO (PMID:22007132) MGI PMID:22007132 NCBI chrNW_004955423:9,630,308...9,747,820
Ensembl chrNW_004955423:9,629,378...9,747,820 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622 		JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within ISO (PMID:20704721)
(PMID:15229603)		 MGI PMID:15229603 PMID:20704721 NCBI chrNW_004955437:9,037,933...9,094,237
Ensembl chrNW_004955437:9,037,661...9,094,287 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in
acts_upstream_of_or_within		 ISO (MGI:69552|PMID:7720556)
(PMID:9636176)		 UniProt
MGI		 PMID:7720556 PMID:9636176 MGI:69552 NCBI chrNW_004955502:2,947,170...2,980,634
Ensembl chrNW_004955502:2,950,562...2,980,634 		JBrowse link
G Rala RAS like proto-oncogene A involved_in ISO (MGI:5504565|PMID:23063435) CACAO PMID:23063435 MGI:5504565 NCBI chrNW_004955460:3,789,136...3,853,315
Ensembl chrNW_004955460:3,789,136...3,808,676 		JBrowse link
G Rara retinoic acid receptor alpha acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004955451:14,876,663...14,917,134
Ensembl chrNW_004955451:14,897,726...14,917,134 		JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004955458:480,257...501,172
Ensembl chrNW_004955458:480,070...501,356 		JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within ISO (PMID:14749425) MGI PMID:14749425 NCBI chrNW_004955416:21,221,023...21,261,831
Ensembl chrNW_004955416:21,221,023...21,261,831 		JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO (PMID:17229766) MGI PMID:17229766 NCBI chrNW_004955487:5,856,190...5,972,408
Ensembl chrNW_004955487:5,859,204...5,972,401 		JBrowse link
G Rps7 ribosomal protein S7 acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004955487:3,793,168...3,798,007
Ensembl chrNW_004955487:3,792,870...3,798,153 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:16790473) MGI PMID:16790473 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within ISO (PMID:16790473) MGI PMID:16790473 NCBI chrNW_004955445:6,824,797...6,841,141
Ensembl chrNW_004955445:6,824,770...6,842,187 		JBrowse link
G Scrib scribble planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO (PMID:22095531)
(PMID:21515572)
(PMID:20643356)		 UniProt
MGI		 PMID:20643356 PMID:21515572 PMID:22095531 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098 		JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within ISO (PMID:23760952) MGI PMID:23760952 NCBI chrNW_004955445:11,990,916...12,009,178
Ensembl chrNW_004955445:11,990,792...12,011,553 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345)
(PMID:19966784)		 MGI PMID:19966784 PMID:20215345 NCBI chrNW_004955496:666,728...732,829
Ensembl chrNW_004955496:666,404...717,862 		JBrowse link
G Sema4c semaphorin 4C involved_in ISO (MGI:4881530|PMID:21122816) UniProt PMID:21122816 MGI:4881530 NCBI chrNW_004955470:4,213,006...4,220,167
Ensembl chrNW_004955470:4,213,006...4,220,169 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:20133625) MGI PMID:20133625 NCBI chrNW_004955420:25,070,626...25,178,410
Ensembl chrNW_004955420:25,090,798...25,177,760 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:19850029) MGI PMID:19850029 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:19850029) MGI PMID:19850029 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321 		JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO (PMID:16249236) MGI PMID:16249236 NCBI chrNW_004955433:1,135,589...1,423,449
Ensembl chrNW_004955433:1,358,444...1,422,498 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:9284043) MGI PMID:9284043 NCBI chrNW_004955486:8,857,693...8,921,821
Ensembl chrNW_004955486:8,857,693...8,921,821 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO (PMID:19592578) MGI PMID:19592578 NCBI chrNW_004955416:7,715,536...7,728,759
Ensembl chrNW_004955416:7,715,536...7,729,158 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type 2 acts_upstream_of_or_within ISO (PMID:19592578) MGI PMID:19592578 NCBI chrNW_004955468:1,142,718...1,181,210
Ensembl chrNW_004955468:1,143,118...1,169,632 		JBrowse link
G St14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within ISO (PMID:19592578) MGI PMID:19592578 NCBI chrNW_004955412:31,091,313...31,129,050
Ensembl chrNW_004955412:31,090,504...31,129,050 		JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004955464:11,213,265...11,288,648
Ensembl chrNW_004955464:11,228,667...11,289,648 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:16155214) MGI PMID:16155214 NCBI chrNW_004955485:7,805,244...7,925,414
Ensembl chrNW_004955485:7,808,131...7,925,677 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:16835439) MGI PMID:16835439 NCBI chrNW_004955439:15,675,680...15,683,542
Ensembl chrNW_004955439:15,676,095...15,683,554 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (PMID:17868131) MGI PMID:17868131 NCBI chrNW_004955559:1,450,706...1,465,947
Ensembl chrNW_004955559:1,450,706...1,465,947 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622766), (PMID:9811866) MGI PMID:8622766 PMID:9811866 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (MGI:74339|PMID:7600998) BHF-UCL PMID:7600998 MGI:74339 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:17082251) MGI PMID:17082251 NCBI chrNW_004955402:7,130,809...7,138,945
Ensembl chrNW_004955402:7,129,484...7,138,340 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004955482:5,404,739...5,415,243
Ensembl chrNW_004955482:5,404,739...5,415,243 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO (MGI:2181331|PMID:11007897) UniProt PMID:11007897 MGI:2181331 NCBI chrNW_004955422:9,925,765...9,950,354
Ensembl chrNW_004955422:9,932,680...9,949,100 		JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO (PMID:19098426) MGI PMID:19098426 NCBI chrNW_004955421:97,130...174,326
Ensembl chrNW_004955421:97,772...168,432 		JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within ISO (PMID:11438694) MGI PMID:11438694 NCBI chrNW_004955513:2,197,037...2,244,992
Ensembl chrNW_004955513:2,197,037...2,244,992 		JBrowse link
G Tsc2 TSC complex subunit 2 acts_upstream_of_or_within ISO (PMID:10096549) MGI PMID:10096549 NCBI chrNW_004955442:15,178,356...15,216,978
Ensembl chrNW_004955442:15,178,487...15,216,362 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19223390) MGI PMID:19223390 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:7729687) MGI PMID:7729687 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:15229603)
(PMID:19966784)
(PMID:21246654)
(PMID:17433286)
(PMID:17229766)
(PMID:14512015)
(PMID:11709546), (PMID:12499390)
(PMID:23760952)		 MGI PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 More... NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
G Vasp vasodilator stimulated phosphoprotein acts_upstream_of_or_within ISO (PMID:15371503) MGI PMID:15371503 NCBI chrNW_004955574:21,569...33,705
Ensembl chrNW_004955574:21,911...34,197 		JBrowse link
G Wdr83 WD repeat domain 83 acts_upstream_of_or_within ISO (PMID:37509073) MGI PMID:37509073 NCBI chrNW_004955415:31,774,017...31,778,737
Ensembl chrNW_004955415:31,774,017...31,778,737 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:17433286)
(PMID:19795512)		 MGI PMID:17433286 PMID:19795512 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:16598713) MGI PMID:16598713 NCBI chrNW_004955440:10,755,658...10,881,044
Ensembl chrNW_004955440:10,756,014...10,795,491 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004955404:10,731,987...10,735,599 JBrowse link
G Zic5 Zic family member 5 acts_upstream_of_or_within ISO (PMID:15136147) MGI PMID:15136147 NCBI chrNW_004955404:10,745,551...10,752,006
Ensembl chrNW_004955404:10,745,620...10,751,872 		JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brpf1 bromodomain and PHD finger containing 1 acts_upstream_of_or_within ISO (PMID:27528195) MGI PMID:27528195 NCBI chrNW_004955561:1,260,237...1,275,953
Ensembl chrNW_004955561:1,259,700...1,276,015 		JBrowse link
G Casp8 caspase 8 acts_upstream_of_or_within ISO (PMID:12404118) MGI PMID:12404118 NCBI chrNW_004955403:322,082...348,591
Ensembl chrNW_004955403:322,555...347,053 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:11694877) MGI PMID:11694877 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (PMID:11716496) MGI PMID:11716496 NCBI chrNW_004955442:3,026,458...3,033,582
Ensembl chrNW_004955442:3,025,484...3,033,582 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:14603322) MGI PMID:14603322 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004955445:13,542,726...13,580,204
Ensembl chrNW_004955445:13,543,804...13,580,204 		JBrowse link
G Ipmk inositol polyphosphate multikinase acts_upstream_of_or_within ISO (PMID:15939867) MGI PMID:15939867 NCBI chrNW_004955425:11,949,849...12,000,610
Ensembl chrNW_004955425:11,945,858...11,985,023 		JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (PMID:16260493) MGI PMID:16260493 NCBI chrNW_004955411:17,177,335...17,229,957
Ensembl chrNW_004955411:17,177,335...17,229,957 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004955402:10,392,308...10,502,576
Ensembl chrNW_004955402:10,392,308...10,502,576 		JBrowse link
G Nup50 nucleoporin 50 acts_upstream_of_or_within ISO (PMID:10891500) MGI PMID:10891500 NCBI chrNW_004955413:29,595,498...29,615,167 JBrowse link
G Ptch1 patched 1 involved_in ISO (MGI:3687672|PMID:10500113) Roslin_Institute PMID:10500113 MGI:3687672 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622 		JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:8124714 RGD:69996 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Stk3 serine/threonine kinase 3 acts_upstream_of_or_within ISO (PMID:19786569) MGI PMID:19786569 NCBI chrNW_004955417:14,098,851...14,381,553
Ensembl chrNW_004955417:14,095,694...14,381,607 		JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within ISO (PMID:19786569) MGI PMID:19786569 NCBI chrNW_004955445:12,308,285...12,399,012
Ensembl chrNW_004955445:12,308,285...12,399,012 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004955482:7,504,554...7,533,605
Ensembl chrNW_004955482:7,504,532...7,528,542 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:11406614) MGI PMID:11406614 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (PMID:20223754) MGI PMID:20223754 NCBI chrNW_004955413:30,455,194...30,561,124
Ensembl chrNW_004955413:30,457,030...30,561,124 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:20223754) MGI PMID:20223754 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:14623822) MGI PMID:14623822 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chrNW_004955422:16,333,363...16,339,853
Ensembl chrNW_004955422:16,333,363...16,339,853 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295) MGI PMID:9435295 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO (PMID:9620767) MGI PMID:9620767 NCBI chrNW_004955430:6,955,575...6,956,991
Ensembl chrNW_004955430:6,955,575...6,956,991 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:18377888) MGI PMID:18377888 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tcap titin-cap involved_in ISO (MGI:1314551|PMID:9817758) BHF-UCL PMID:9817758 MGI:1314551 NCBI chrNW_004955451:14,413,657...14,414,735
Ensembl chrNW_004955451:14,413,657...14,414,735 		JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:16916509) MGI PMID:16916509 NCBI chrNW_004955444:8,336,071...8,655,041
Ensembl chrNW_004955444:8,495,530...8,655,100 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:17074316) MGI PMID:17074316 NCBI chrNW_004955442:18,320,674...18,327,062
Ensembl chrNW_004955442:18,319,762...18,325,337 		JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (PMID:20704721) MGI PMID:20704721 NCBI chrNW_004955413:30,455,194...30,561,124
Ensembl chrNW_004955413:30,457,030...30,561,124 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:16571627) MGI PMID:16571627 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (PMID:16571627) MGI PMID:16571627 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (PMID:19008950) MGI PMID:19008950 NCBI chrNW_004955420:23,291,650...23,301,695
Ensembl chrNW_004955420:23,293,222...23,301,694 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within ISO (PMID:20940229) MGI PMID:20940229 NCBI chrNW_004955451:17,501,410...17,503,726 JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within ISO (PMID:20643356) MGI PMID:20643356 NCBI chrNW_004955452:4,125,792...4,159,699
Ensembl chrNW_004955452:4,128,269...4,160,683 		JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within ISO (PMID:20704721) MGI PMID:20704721 NCBI chrNW_004955437:9,037,933...9,094,237
Ensembl chrNW_004955437:9,037,661...9,094,287 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321 		JBrowse link
G Sfrp5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004955507:3,836,607...3,841,910
Ensembl chrNW_004955507:3,836,607...3,841,910 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18257070)
(PMID:20704721)
(PMID:16571627)
(PMID:20643356)
(PMID:19008950)
(PMID:20940229)		 MGI PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19056682) MGI PMID:19056682 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
planar dichotomous subdivision of terminal units involved in lung branching morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (PMID:20223754) MGI PMID:20223754 NCBI chrNW_004955413:30,455,194...30,561,124
Ensembl chrNW_004955413:30,457,030...30,561,124 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:20223754) MGI PMID:20223754 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
positive regulation of blood vessel branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in ISO (MGI:5588737|PMID:24863063) BHF-UCL PMID:24863063 MGI:5588737 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239 		JBrowse link
G Mdk midkine involved_in ISO (PMID:19060126) UniProt PMID:19060126 NCBI chrNW_004955422:1,655,351...1,657,026
Ensembl chrNW_004955422:1,655,358...1,657,044 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:23201774) BHF-UCL PMID:23201774 NCBI chrNW_004955495:4,641,883...4,650,518
Ensembl chrNW_004955495:4,644,023...4,650,083 		JBrowse link
positive regulation of branching involved in lung morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO (MGI:4456940|PMID:17350185) UniProt PMID:17350185 MGI:4456940 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:18533146) MGI PMID:18533146 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha ISO RGD PMID:8879189 RGD:11087558 NCBI chrNW_004955447:16,570,652...16,613,410
Ensembl chrNW_004955447:16,569,909...16,612,373 		JBrowse link
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO (PMID:18607644) UniProt PMID:18607644 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G Agtr1 angiotensin II receptor type 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004955474:8,733,942...8,781,305
Ensembl chrNW_004955474:8,733,942...8,781,255 		JBrowse link
G Agtr2 angiotensin II receptor type 2 involved_in ISO PMID:17537984
(MGI:3808848|PMID:18607644)		 UniProt PMID:17537984 PMID:18607644 MGI:3808848 RGD:1643596 NCBI chrNW_004955534:3,653,112...3,654,248
Ensembl chrNW_004955534:3,653,157...3,654,248 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:17229286), (PMID:8657307)
(MGI:5284782|PMID:17229286)
PMID:17522159
PMID:17537984		 UniProt PMID:8657307 PMID:17229286 PMID:17522159 PMID:17537984 MGI:5284782 RGD:1643596 RGD:8656002 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within		 ISO (MGI:3714585|PMID:17522159)
(PMID:17522159)
(PMID:21281623)		 UniProt
MGI		 PMID:17522159 PMID:21281623 MGI:3714585 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271 		JBrowse link
G Hoxb7 homeobox B7 involved_in ISO (MGI:3833510|PMID:17881463) UniProt PMID:17881463 MGI:3833510 NCBI chrNW_004955451:12,630,276...12,634,641
Ensembl chrNW_004955451:12,630,276...12,634,634 		JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in ISO (MGI:5006869|PMID:21523854) UniProt PMID:21523854 MGI:5006869 NCBI chrNW_004955476:6,611,102...6,629,294
Ensembl chrNW_004955476:6,610,103...6,629,264 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:3613206|PMID:16216236) UniProt PMID:16216236 MGI:3613206 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Maged1 MAGE family member D1 involved_in ISO (MGI:3848096|PMID:19268530) UniProt PMID:19268530 MGI:3848096 NCBI chrNW_004955543:2,939,960...3,052,442
Ensembl chrNW_004955543:2,975,259...3,052,504 		JBrowse link
G Nog noggin involved_in ISO (MGI:2446986|PMID:12141440), (MGI:3714585|PMID:17522159) UniProt PMID:12141440 PMID:17522159 MGI:2446986 MGI:3714585 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325), (MGI:3833510|PMID:17881463), (MGI:5009394|PMID:17538188) UniProt PMID:17314325 PMID:17538188 PMID:17881463 MGI:3704067 MGI:3833510 MGI:5009394 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Pax8 paired box 8 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004955470:1,016,226...1,072,643
Ensembl chrNW_004955470:1,016,289...1,073,796 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:24550112) MGI PMID:24550112 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
G Six1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5009396|PMID:17300925)
(PMID:21281623)		 UniProt
MGI		 PMID:17300925 PMID:21281623 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,902,728...8,915,685
Ensembl chrNW_004955466:8,902,517...8,915,723 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (MGI:3611729|PMID:16396903) UniProt PMID:16396903 MGI:3611729 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in ISO (MGI:4939090|PMID:21212101) UniProt PMID:21212101 MGI:4939090 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (MGI:4939090|PMID:21212101) UniProt PMID:21212101 MGI:4939090 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (MGI:3611700|PMID:16291795) UniProt PMID:16291795 MGI:3611700 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO (PMID:11507767) MGI PMID:11507767 NCBI chrNW_004955435:15,948,262...15,962,958
Ensembl chrNW_004955435:15,948,262...15,962,958 		JBrowse link
positive regulation of endothelial tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itgax integrin subunit alpha X involved_in ISO (PMID:30873824) ARUK-UCL PMID:30873824 NCBI chrNW_004955493:8,196,593...8,220,296 JBrowse link
positive regulation of epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egf epidermal growth factor involved_in ISO (PMID:31915155) BHF-UCL PMID:31915155 NCBI chrNW_004955496:325,954...401,430
Ensembl chrNW_004955496:328,075...401,569 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:31915155) BHF-UCL PMID:31915155 NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773 		JBrowse link
G Mmrn2 multimerin 2 involved_in ISO (PMID:25745997) ComplexPortal PMID:25745997 NCBI chrNW_004955510:5,943,126...5,957,679
Ensembl chrNW_004955510:5,945,043...5,958,352 		JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta involved_in ISO (PMID:31915155) BHF-UCL PMID:31915155 NCBI chrNW_004955486:3,813,923...3,837,563
Ensembl chrNW_004955486:3,813,923...3,838,119 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (PMID:31915155) BHF-UCL PMID:31915155 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 involved_in ISO (MGI:5635320|PMID:25677106) UniProt PMID:25677106 MGI:5635320 NCBI chrNW_004955437:22,122,296...22,165,848
Ensembl chrNW_004955437:22,124,272...22,165,848 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:8657307) UniProt PMID:8657307 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,902,728...8,915,685
Ensembl chrNW_004955466:8,902,517...8,915,723 		JBrowse link
primary lung bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:16364283) MGI PMID:16364283 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421 		JBrowse link
primary ureteric bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lzts2 leucine zipper tumor suppressor 2 acts_upstream_of_or_within ISO (PMID:21949185) MGI PMID:21949185 NCBI chrNW_004955485:9,182,984...9,187,144
Ensembl chrNW_004955485:9,181,014...9,191,651 		JBrowse link
proximal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Commd5 COMM domain containing 5 involved_in ISO PMID:24515317 UniProt PMID:24515317 RGD:10047245 NCBI chrNW_004955454:3,322,253...3,324,313
Ensembl chrNW_004955454:3,322,253...3,324,313 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO RGD PMID:35695380 RGD:155630629 NCBI chrNW_004955467:13,151,663...13,169,005
Ensembl chrNW_004955467:13,151,957...13,168,696 		JBrowse link
regulation of blood vessel branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fkbpl FKBP prolyl isomerase like acts_upstream_of_or_within ISO (PMID:25767277) MGI PMID:25767277 NCBI chrNW_004955437:592,098...594,244
Ensembl chrNW_004955437:592,098...594,244 		JBrowse link
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:20040500) MGI PMID:20040500 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,902,728...8,915,685
Ensembl chrNW_004955466:8,902,517...8,915,723 		JBrowse link
regulation of branching involved in lung morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:24191021) MGI PMID:24191021 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
regulation of branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav3 caveolin 3 acts_upstream_of_or_within ISO (PMID:19164602) MGI PMID:19164602 NCBI chrNW_004955561:326,008...335,911
Ensembl chrNW_004955561:325,944...335,914 		JBrowse link
G Etv5 ETS variant transcription factor 5 acts_upstream_of_or_within ISO (PMID:12871699) MGI PMID:12871699 NCBI chrNW_004955420:21,503,820...21,576,539
Ensembl chrNW_004955420:21,509,248...21,576,599 		JBrowse link
G Phb2 prohibitin 2 acts_upstream_of_or_within ISO (PMID:17065319) MGI PMID:17065319 NCBI chrNW_004955413:4,557,969...4,563,697
Ensembl chrNW_004955413:4,558,259...4,563,582 		JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (PMID:17898001) MGI PMID:17898001 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:17898001) MGI PMID:17898001 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six2 SIX homeobox 2 involved_in ISO (MGI:3691408|PMID:17036046) UniProt PMID:17036046 MGI:3691408 NCBI chrNW_004955441:12,029,530...12,033,214
Ensembl chrNW_004955441:12,029,480...12,033,214 		JBrowse link
regulation of endothelial tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in ISO (PMID:17895370) BHF-UCL PMID:17895370 NCBI chrNW_004955426:19,146,288...19,471,880
Ensembl chrNW_004955426:19,150,343...19,471,534 		JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 involved_in ISO (PMID:16484616) CACAO PMID:16484616 NCBI chrNW_004955433:748,392...750,890
Ensembl chrNW_004955433:748,284...750,927 		JBrowse link
G Fgf1 fibroblast growth factor 1 involved_in ISO (PMID:23469107) UniProt PMID:23469107 NCBI chrNW_004955415:11,151,330...11,245,554
Ensembl chrNW_004955415:11,151,266...11,247,344 		JBrowse link
G Foxp1 forkhead box P1 involved_in ISO (PMID:24023716) UniProt PMID:24023716 NCBI chrNW_004955421:16,595,445...17,075,923
Ensembl chrNW_004955421:16,595,471...17,075,923 		JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:19966784) MGI PMID:19966784 NCBI chrNW_004955496:666,728...732,829
Ensembl chrNW_004955496:666,404...717,862 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
renal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain involved_in ISO (PMID:18160688) BHF-UCL PMID:18160688 NCBI chrNW_004955404:2,196,193...2,327,324
Ensembl chrNW_004955404:2,260,029...2,326,074 		JBrowse link
G Hdac5 histone deacetylase 5 involved_in ISO (MGI:4440396|PMID:20181743) UniProt PMID:20181743 MGI:4440396 NCBI chrNW_004955451:17,223,217...17,246,451
Ensembl chrNW_004955451:17,223,287...17,244,051 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (MGI:4440396|PMID:20181743) UniProt PMID:20181743 MGI:4440396 NCBI chrNW_004955418:22,537,388...22,701,434
Ensembl chrNW_004955418:22,537,285...22,701,434 		JBrowse link
G Mtss1 MTSS I-BAR domain containing 1 involved_in ISO (MGI:4440396|PMID:20181743) UniProt PMID:20181743 MGI:4440396 NCBI chrNW_004955540:3,204,357...3,346,026
Ensembl chrNW_004955540:3,204,367...3,346,026 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (MGI:4440396|PMID:20181743) UniProt PMID:20181743 MGI:4440396 NCBI chrNW_004955474:1,831,221...1,868,170
Ensembl chrNW_004955474:1,833,701...1,868,817 		JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO (PMID:10693795) MGI PMID:10693795 NCBI chrNW_004955469:3,134,355...3,149,177 JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chrNW_004955486:8,700,212...8,701,581
Ensembl chrNW_004955486:8,700,162...8,701,748 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chrNW_004955504:2,072,540...2,099,781 JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chrNW_004955504:1,456,433...1,460,996
Ensembl chrNW_004955504:1,455,664...1,460,996 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chrNW_004955433:11,944,890...11,948,372
Ensembl chrNW_004955433:11,944,890...11,948,369 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390 		JBrowse link
tertiary branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO (PMID:14676301) MGI PMID:14676301 NCBI chrNW_004955475:7,013,960...7,192,473
Ensembl chrNW_004955475:7,013,960...7,186,069 		JBrowse link
G Pgr progesterone receptor acts_upstream_of_or_within ISO (PMID:10733525) MGI PMID:10733525 NCBI chrNW_004955412:4,643,839...4,693,478 JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:10733525) MGI PMID:10733525 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989 		JBrowse link
ureteric bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:20040500) MGI PMID:20040500 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3611949|PMID:16319112) UniProt PMID:16319112 MGI:3611949 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (MGI:81287|PMID:8657307) UniProt PMID:8657307 MGI:81287 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (MGI:3714585|PMID:17522159) UniProt PMID:17522159 MGI:3714585 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271 		JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within ISO (PMID:9637690) MGI PMID:9637690 NCBI chrNW_004955423:7,090,246...7,253,608
Ensembl chrNW_004955423:7,091,765...7,253,339 		JBrowse link
G Nog noggin involved_in ISO (MGI:3714585|PMID:17522159) UniProt PMID:17522159 MGI:3714585 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740 		JBrowse link
ureteric bud invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmn1 formin 1 acts_upstream_of_or_within ISO (PMID:7517224) MGI PMID:7517224 NCBI chrNW_004955416:1,365,797...1,774,025
Ensembl chrNW_004955416:1,365,765...1,774,027 		JBrowse link
G Kif26b kinesin family member 26B acts_upstream_of_or_within ISO (PMID:20439720) MGI PMID:20439720 NCBI chrNW_004955406:8,289,774...8,738,131
Ensembl chrNW_004955406:8,290,046...8,731,226 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:2149437|PMID:11688560)
(PMID:16839447)		 UniProt
MGI		 PMID:11688560 PMID:16839447 MGI:2149437 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 involved_in ISO (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chrNW_004955444:1,498,444...1,502,099
Ensembl chrNW_004955444:1,498,675...1,500,945 		JBrowse link
G Tacstd2 tumor associated calcium signal transducer 2 involved_in ISO (MGI:5315060|PMID:22194864) UniProt PMID:22194864 MGI:5315060 NCBI chrNW_004955464:1,282,989...1,284,785 JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:9757009) UniProt PMID:9757009 NCBI chrNW_004955414:15,674,478...15,694,758
Ensembl chrNW_004955414:15,674,940...15,694,883 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure morphogenesis 2558
        tube morphogenesis 873
          epithelial tube morphogenesis 379
            branching morphogenesis of an epithelial tube + 186
            embryonic heart tube morphogenesis + 64
            endothelial tube morphogenesis + 17
            epithelial tube formation + 163
            mammary gland cord morphogenesis + 0
            mammary gland duct morphogenesis + 41
            metanephric tubule morphogenesis + 10
            nephric duct morphogenesis + 11
            otic vesicle morphogenesis + 10
            renal tubule morphogenesis + 89
Path 2
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure development 5540
        anatomical structure morphogenesis 2558
          tissue morphogenesis 658
            morphogenesis of an epithelium 554
              epithelial tube morphogenesis 379
                branching morphogenesis of an epithelial tube + 186
                embryonic heart tube morphogenesis + 64
                endothelial tube morphogenesis + 17
                epithelial tube formation + 163
                mammary gland cord morphogenesis + 0
                mammary gland duct morphogenesis + 41
                metanephric tubule morphogenesis + 10
                nephric duct morphogenesis + 11
                otic vesicle morphogenesis + 10
                renal tubule morphogenesis + 89
paths to the root