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ONTOLOGY REPORT - ANNOTATIONS


Term:apoptotic process involved in morphogenesis
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Accession:GO:0060561 term browser browse the term
Definition:Any apoptotic process that contributes to the shaping of an anatomical structure.
Synonyms:narrow_synonym: apoptosis involved in morphogenesis
 related_synonym: apoptosis involved in development;   morphogenetic apoptosis



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apoptotic process involved in morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:88516 (MGI:3617146|PMID:16439475) RGD PMID:16439475 MGI:3617146 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO MGI:88515 (MGI:3617146|PMID:16439475) RGD PMID:16439475 MGI:3617146 NCBI chr 8:51,093,441...51,099,161
Ensembl chr 8:51,093,441...51,099,157
JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO MGI:96970 (MGI:3530724|PMID:15649466) RGD PMID:15649466 MGI:3530724 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3574771|MGI:3583769 (MGI:3821812|PMID:18791178)
Ensembl
RGD
PMID:18791178 GO_REF:0000107 MGI:3821812 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO MGI:1926601 (MGI:3530724|PMID:15649466) RGD PMID:15649466 MGI:3530724 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Ppp2r1b protein phosphatase 2 scaffold subunit A beta involved_in ISO (PMID:21172653) RGD PMID:21172653 NCBI chr 8:51,195,860...51,228,442
Ensembl chr 8:51,186,717...51,228,485
JBrowse link
G Scrib scribble planar cell polarity protein involved_in ISO (PMID:19041750) RGD PMID:19041750 NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
apoptotic process involved in blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 acts_upstream_of_or_within ISO MGI:99702 (MGI:3692135|PMID:15955981) RGD PMID:15955981 MGI:3692135 NCBI chr20:5,100,480...5,109,669
Ensembl chr20:5,100,480...5,109,264
JBrowse link
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1097161 (MGI:3692135|PMID:15955981)
Ensembl
RGD
PMID:15955981 GO_REF:0000107 MGI:3692135 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1926601 (MGI:3604165|PMID:16163358)
Ensembl
RGD
PMID:16163358 GO_REF:0000107 MGI:3604165 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO MGI:2183279 (MGI:3604165|PMID:16163358) RGD PMID:16163358 MGI:3604165 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link
G Spi1 Spi-1 proto-oncogene acts_upstream_of_or_within ISO MGI:1927876 (MGI:3604165|PMID:16163358) RGD PMID:16163358 MGI:3604165 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393
JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO MGI:3793960 (MGI:3604165|PMID:16163358) RGD PMID:16163358 MGI:3604165 NCBI chr 7:116,634,817...116,679,089
Ensembl chr 7:116,634,814...116,679,581
JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1197519 (MGI:3581932|PMID:15967824)
Ensembl
RGD
PMID:15967824 GO_REF:0000107 MGI:3581932 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO MGI:99702 (MGI:3581932|PMID:15967824) RGD PMID:15967824 MGI:3581932 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:1933835|MGI:2158470 (MGI:3608163|PMID:16245338) RGD PMID:16245338 MGI:3608163 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
apoptotic process involved in endocardial cushion morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 NOT|involved_in ISO (MGI:3814273|PMID:18924235) RGD PMID:18924235 MGI:3814273 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
apoptotic process involved in heart morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2446577 (MGI:3761425|PMID:17023674)
Ensembl
RGD
PMID:17023674 GO_REF:0000107 MGI:3761425 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857639 (MGI:2153294|PMID:11784028)
Ensembl
RGD
PMID:11784028 GO_REF:0000107 MGI:2153294 NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3773736|PMID:16510504)
Ensembl
RGD
PMID:16510504 GO_REF:0000107 MGI:3773736 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
JBrowse link
epithelial cell apoptotic process involved in palatal shelf morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag2 jagged canonical Notch ligand 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2657215 (MGI:3624929|PMID:16607638)
Ensembl
RGD
PMID:16607638 GO_REF:0000107 MGI:3624929 NCBI chr 6:131,983,056...132,005,359
Ensembl chr 6:131,983,056...132,005,818
JBrowse link
negative regulation of apoptotic process involved in morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfbr3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (MGI:5617089|PMID:25382630) RGD PMID:25382630 MGI:5617089 NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341
JBrowse link
negative regulation of apoptotic process involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1347481 (MGI:3701735|PMID:16839542) RGD PMID:16839542 MGI:3701735 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (MGI:3701735|PMID:16839542) RGD PMID:16839542 MGI:3701735 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856 (MGI:4430439|PMID:20040500) RGD PMID:20040500 MGI:4430439 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3704067|PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax8 paired box 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:3704067|PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654 (MGI:86404|PMID:9056639) RGD PMID:9056639 MGI:86404 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
positive regulation of apoptotic process involved in mammary gland involution term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within ISO MGI:2178779 (MGI:3052392|PMID:15282149) RGD PMID:15282149 MGI:3052392 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461
JBrowse link
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857429 (MGI:1337911|PMID:10363969)
Ensembl
RGD
PMID:10363969 GO_REF:0000107 MGI:1337911 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A acts_upstream_of_or_within ISO MGI:1926877 (MGI:3047035|PMID:15105443) RGD PMID:15105443 MGI:3047035 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149
JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (PMID:11080164) RGD PMID:11080164 NCBI chr 8:58,627,347...58,661,927
Ensembl chr 8:58,628,837...58,658,971
JBrowse link
G Vdr vitamin D receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2183404 (MGI:3051725|PMID:15178742)
Ensembl
RGD
PMID:15178742 GO_REF:0000107 MGI:3051725 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link
positive regulation of apoptotic process involved in morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 involved_in ISO (MGI:6158728|PMID:26491108) RGD PMID:26491108 MGI:6158728 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P25119 (MGI:6158728|PMID:26491108)
Ensembl
RGD
PMID:26491108 GO_REF:0000107 MGI:6158728 NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591
JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in ISO UniProtKB:P25118 (MGI:6158728|PMID:26491108) RGD PMID:26491108 MGI:6158728 NCBI chr 5:157,070,642...157,104,216
Ensembl chr 5:157,070,642...157,104,206
JBrowse link
regulation of apoptotic process involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (MGI:3609313|PMID:11390347) RGD PMID:11390347 MGI:3609313 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure morphogenesis 2925
        apoptotic process involved in morphogenesis 33
          apoptotic process involved in blood vessel morphogenesis 6
          apoptotic process involved in embryonic digit morphogenesis 3
          apoptotic process involved in heart morphogenesis + 7
          apoptotic process involved in mammary gland involution + 5
          apoptotic process involved in tube lumen cavitation + 0
          clearance of cells from fusion plate by apoptotic process 0
          epithelial cell apoptotic process involved in palatal shelf morphogenesis 1
          mesenchymal cell apoptotic process involved in nephron morphogenesis + 4
          negative regulation of apoptotic process involved in morphogenesis + 7
          positive regulation of apoptotic process involved in morphogenesis + 8
          regulation of apoptotic process involved in morphogenesis + 16
Path 2
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cell death 2173
        programmed cell death 1978
          apoptotic process 1923
            apoptotic process involved in development 49
              apoptotic process involved in morphogenesis 33
                apoptotic process involved in blood vessel morphogenesis 6
                apoptotic process involved in embryonic digit morphogenesis 3
                apoptotic process involved in heart morphogenesis + 7
                apoptotic process involved in mammary gland involution + 5
                apoptotic process involved in tube lumen cavitation + 0
                clearance of cells from fusion plate by apoptotic process 0
                epithelial cell apoptotic process involved in palatal shelf morphogenesis 1
                mesenchymal cell apoptotic process involved in nephron morphogenesis + 4
                negative regulation of apoptotic process involved in morphogenesis + 7
                positive regulation of apoptotic process involved in morphogenesis + 8
                regulation of apoptotic process involved in morphogenesis + 16
paths to the root