ONTOLOGY REPORT - ANNOTATIONS
Term: mesenchyme development
Accession: GO:0060485
browse the term
Definition: The process whose specific outcome is the progression of a mesenchymal tissue over time, from its formation to the mature structure. A mesenchymal tissue is made up of loosely packed stellate cells.
Synonyms: exact_synonym: mesenchymal development
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Bmp2
bone morphogenetic protein 2
involved_in
ISO
(PMID:20890042)
RGD
PMID:20890042
NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
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Bmp7
bone morphogenetic protein 7
involved_in
ISO
(MGI:1289719|PMID:9693150)
RGD
PMID:9693150
MGI:1289719
NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
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Bnc2
basonuclin 2
acts_upstream_of_or_within
ISO
MGI:3639337 (MGI:4355754|PMID:19706529)
RGD
PMID:19706529
MGI:4355754
NCBI chr 5:102,407,508...102,807,389
Ensembl chr 5:102,415,847...102,786,331
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Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(MGI:5912649|PMID:28859094)
RGD
PMID:28859094
MGI:5912649
NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
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Hand1
heart and neural crest derivatives expressed 1
acts_upstream_of_or_within
ISO
MGI:103580 (MGI:3765375|PMID:17764670)
RGD
PMID:17764670
MGI:3765375
NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
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Hand2
heart and neural crest derivatives expressed 2
acts_upstream_of_or_within
ISO
MGI:103577 (MGI:3765375|PMID:17764670)
RGD
PMID:17764670
MGI:3765375
NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
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Bmp4
bone morphogenetic protein 4
NOT|involved_in
ISO
(MGI:3814273|PMID:18924235)
RGD
PMID:18924235
MGI:3814273
NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
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Lrp6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
MGI:2156191 (MGI:4413394|PMID:19705442)
RGD
PMID:19705442
MGI:4413394
NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
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Ctnnb1
catenin beta 1
involved_in
ISO ISS
(PMID:17072303) GO_REF:0000024
RGD UniProt
PMID:17072303
GO_REF:0000024
NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
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Tcf7l2
transcription factor 7 like 2
involved_in
ISO
(PMID:17072303)
RGD
PMID:17072303
NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514 Ensembl chr 1:276,659,542...276,730,514
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Sema3c
semaphorin 3C
involved_in
ISO
(MGI:5693177|PMID:26053665)
RGD
PMID:26053665
MGI:5693177
NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
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Adam15
ADAM metallopeptidase domain 15
acts_upstream_of_or_within
ISO
(MGI:4458867|PMID:19156209)
RGD
PMID:19156209
MGI:4458867
NCBI chr 2:188,661,831...188,672,337
Ensembl chr 2:188,661,699...188,672,247
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Bmp2
bone morphogenetic protein 2
involved_in
ISO IEA
(PMID:18184661) GO_REF:0000107
RGD Ensembl
PMID:18184661
GO_REF:0000107
NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
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Hey1
hes-related family bHLH transcription factor with YRPW motif 1
involved_in
ISO
UniProtKB:Q9DBX7 (MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
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Hey2
hes-related family bHLH transcription factor with YRPW motif 2
involved_in
ISO
(MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
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Heyl
hes-related family bHLH transcription factor with YRPW motif-like
involved_in
ISO
UniProtKB:Q9WV93 (MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 5:140,923,914...140,940,905
Ensembl chr 5:140,923,914...140,940,905
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LOC103690035
TGF-beta receptor type-1-like
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 5:64,565,358...64,585,219
Ensembl chr 5:64,566,804...64,584,309
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Notch1
notch receptor 1
involved_in
ISO
(MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
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Olfm1
olfactomedin 1
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 3:6,761,031...6,798,739
Ensembl chr 3:6,773,813...6,798,737
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Rtn4
reticulon 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:4458867|PMID:19156209)
Ensembl RGD
PMID:19156209
GO_REF:0000107 MGI:4458867
NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
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Tbx3
T-box transcription factor 3
involved_in
IEA ISO
GO_REF:0000107 (PMID:22130515)
Ensembl RGD
PMID:22130515
GO_REF:0000107
NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
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Tgfb2
transforming growth factor, beta 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:10092230)
UniProt RGD
PMID:10092230
GO_REF:0000024
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
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Tgfbr1
transforming growth factor, beta receptor 1
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
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Tgfbr3
transforming growth factor beta receptor 3
involved_in
ISO
(PMID:18184661)
RGD
PMID:18184661
NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
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Wnt16
Wnt family member 16
acts_upstream_of_or_within
ISO
(MGI:4458867|PMID:19156209)
RGD
PMID:19156209
MGI:4458867
NCBI chr 4:49,369,246...49,388,156
Ensembl chr 4:49,369,296...49,379,703
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Wnt2
Wnt family member 2
acts_upstream_of_or_within
ISO
MGI:4361155 (MGI:4439199|PMID:20159597)
RGD
PMID:20159597
MGI:4439199
NCBI chr 4:45,286,845...45,332,899
Ensembl chr 4:45,292,437...45,332,420
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Cited2
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
acts_upstream_of_or_within
ISO
MGI:2179740 (MGI:2179743|PMID:11694877)
RGD
PMID:11694877
MGI:2179743
NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
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Mapk1
mitogen activated protein kinase 1
acts_upstream_of_or_within
ISO
MGI:1346859 (MGI:3832113|PMID:18952847)
RGD
PMID:18952847
MGI:3832113
NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
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Mapk3
mitogen activated protein kinase 3
acts_upstream_of_or_within
ISO
MGI:1346858 (MGI:3832113|PMID:18952847)
RGD
PMID:18952847
MGI:3832113
NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
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Dicer1
dicer 1 ribonuclease III
acts_upstream_of_or_within
ISO
MGI:3589208 (MGI:4849577|PMID:21098571)
RGD
PMID:21098571
MGI:4849577
NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
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Hand2
heart and neural crest derivatives expressed 2
involved_in
ISO
(MGI:4413411|PMID:19008477)
RGD
PMID:19008477
MGI:4413411
NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
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Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:4354447|PMID:19609448)
Ensembl RGD
PMID:19609448
GO_REF:0000107 MGI:4354447
NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
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Jag1
jagged canonical Notch ligand 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:4359139|PMID:19509466)
Ensembl RGD
PMID:19509466
GO_REF:0000107 MGI:4359139
NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
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Twist1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857265 (MGI:3805126|PMID:18539270)
RGD
PMID:18539270
MGI:3805126
NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
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Folr1
folate receptor alpha
involved_in
ISO
(MGI:3721767|PMID:17286298)
RGD
PMID:17286298
MGI:3721767
NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
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Hand2
heart and neural crest derivatives expressed 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2386570|MGI:3803647 (MGI:4453274|PMID:20144608)
Ensembl RGD
PMID:20144608
GO_REF:0000107 MGI:4453274
NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
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Nrp1
neuropilin 1
NOT|involved_in
ISO
(MGI:5693177|PMID:26053665)
RGD
PMID:26053665
MGI:5693177
NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
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Pitx2
paired-like homeodomain 2
involved_in
ISO
(MGI:2446944|PMID:12464179)
RGD
PMID:12464179
MGI:2446944
NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
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Twist1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857265 (MGI:3805126|PMID:18539270)
RGD
PMID:18539270
MGI:3805126
NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
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Dchs1
dachsous cadherin-related 1
involved_in
ISO
(PMID:26258302)
RGD
PMID:26258302
NCBI chr 1:170,594,981...170,629,062
Ensembl chr 1:170,594,822...170,628,915
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Eng
endoglin
acts_upstream_of_or_within
ISO
MGI:2177824 (MGI:4368063|PMID:19703439)
RGD
PMID:19703439
MGI:4368063
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
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Notch1
notch receptor 1
involved_in
ISO
(MGI:4837019|PMID:20890042)
RGD
PMID:20890042
MGI:4837019
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
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Snai2
snail family transcriptional repressor 2
involved_in
ISO
(MGI:3808643|PMID:18663143)
RGD
PMID:18663143
MGI:3808643
NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
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Tgfbr2
transforming growth factor, beta receptor 2
NOT|involved_in
ISO
(MGI:4821522|PMID:20652948)
RGD
PMID:20652948
MGI:4821522
NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
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Dand5
DAN domain BMP antagonist family member 5
involved_in
ISO
(MGI:3055649|PMID:15466485)
RGD
PMID:15466485
MGI:3055649
NCBI chr19:25,929,704...25,937,852
Ensembl chr19:25,930,601...25,936,026
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Shh
sonic hedgehog signaling molecule
involved_in
IEA ISO
GO_REF:0000107 (MGI:5142377|PMID:11517919)
Ensembl RGD
PMID:11517919
GO_REF:0000107 MGI:5142377
NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
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Smo
smoothened, frizzled class receptor
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:5142377|PMID:11517919) GO_REF:0000024
Ensembl RGD UniProt
PMID:11517919
GO_REF:0000024 GO_REF:0000107 MGI:5142377
NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
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Jag1
jagged canonical Notch ligand 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:4359139|PMID:19509466)
Ensembl RGD
PMID:19509466
GO_REF:0000107 MGI:4359139
NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
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Acvr1
activin A receptor type 1
involved_in
ISO IEA
(PMID:19506109) GO_REF:0000107
RGD Ensembl
PMID:19506109
GO_REF:0000107
NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
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Bmp4
bone morphogenetic protein 4
involved_in
IEA ISO
GO_REF:0000107 (MGI:3814273|PMID:18924235)
Ensembl RGD
PMID:18924235
GO_REF:0000107 MGI:3814273
NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
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Bmpr2
bone morphogenetic protein receptor type 2
involved_in
ISO
(MGI:2429424|PMID:12441304)
RGD
PMID:12441304
MGI:2429424
NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
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Cited2
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
acts_upstream_of_or_within
ISO
MGI:2176158 (MGI:3574743|PMID:15750185)
RGD
PMID:15750185
MGI:3574743
NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
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Epha3
Eph receptor A3
involved_in
ISO
(MGI:3703403|PMID:17046737)
RGD
PMID:17046737
MGI:3703403
NCBI chr11:421,253...783,037
Ensembl chr11:421,135...782,954
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Erbb3
erb-b2 receptor tyrosine kinase 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1928828 (MGI:1194988|PMID:9362461)
Ensembl RGD
PMID:9362461
GO_REF:0000107 MGI:1194988
NCBI chr 7:2,989,202...3,010,610
Ensembl chr 7:2,989,340...3,010,350
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Erg
ETS transcription factor ERG
acts_upstream_of_or_within
ISO
MGI:5443838 (MGI:5442628|PMID:22932696)
RGD
PMID:22932696
MGI:5442628
NCBI chr11:35,645,317...35,749,637
Ensembl chr11:35,646,116...35,749,594
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Foxf1
forkhead box F1
involved_in
ISO
(PMID:19500772)
RGD
PMID:19500772
NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
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Gata4
GATA binding protein 4
involved_in acts_upstream_of_or_within
ISO
(PMID:21330551) MGI:102541 (MGI:3833786|PMID:19084512) (MGI:3769320|PMID:17643447)
RGD
PMID:17643447 PMID:19084512 PMID:21330551
MGI:3769320 MGI:3833786
NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
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Nedd4
NEDD4 E3 ubiquitin protein ligase
acts_upstream_of_or_within
ISO
MGI:3799317|MGI:98737 (MGI:4452597|PMID:20026598)
RGD
PMID:20026598
MGI:4452597
NCBI chr 8:79,323,408...79,408,842
Ensembl chr 8:79,323,408...79,408,833
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Nfatc1
nuclear factor of activated T-cells 1
involved_in
ISO
UniProtKB:P61022 (MGI:5319103|PMID:22300732)
RGD
PMID:22300732
MGI:5319103
NCBI chr18:77,203,517...77,322,690
Ensembl chr18:77,203,525...77,322,690
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Notch1
notch receptor 1
acts_upstream_of_or_within
ISO
MGI:1857230 (MGI:3027664|PMID:14701881)
RGD
PMID:14701881
MGI:3027664
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
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Rbm24
RNA binding motif protein 24
involved_in
ISO
(MGI:6149097|PMID:29358667)
RGD
PMID:29358667
MGI:6149097
NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
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Tbx5
T-box transcription factor 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:95664 (MGI:3833786|PMID:19084512)
Ensembl RGD
PMID:19084512
GO_REF:0000107 MGI:3833786
NCBI chr12:42,059,688...42,148,226
Ensembl chr12:42,097,626...42,148,146
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Thbs1
thrombospondin 1
acts_upstream_of_or_within
ISO
MGI:97297 (MGI:4452597|PMID:20026598)
RGD
PMID:20026598
MGI:4452597
NCBI chr 3:109,862,120...109,873,466
Ensembl chr 3:109,862,117...109,873,466
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Tmem100
transmembrane protein 100
acts_upstream_of_or_within
ISO
MGI:5432904 (MGI:5613881|PMID:25318679)
RGD
PMID:25318679
MGI:5613881
NCBI chr10:77,537,340...77,543,710
Ensembl chr10:77,537,340...77,543,192
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Aplnr
apelin receptor
involved_in
IEA ISO
GO_REF:0000107 (MGI:5584055|PMID:23603510)
Ensembl RGD
PMID:23603510
GO_REF:0000107 MGI:5584055
NCBI chr 3:72,540,538...72,544,183
Ensembl chr 3:72,540,538...72,544,182
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Bmp2
bone morphogenetic protein 2
involved_in
IEA ISO
GO_REF:0000107 (MGI:3640731|PMID:16730346)
Ensembl RGD
PMID:16730346
GO_REF:0000107 MGI:3640731
NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
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Bmp5
bone morphogenetic protein 5
involved_in
ISO
UniProtKB:P23359 (MGI:1332253|PMID:10079236)
RGD
PMID:10079236
MGI:1332253
NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
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Bmp7
bone morphogenetic protein 7
involved_in
ISO
UniProtKB:P49003 (MGI:1332253|PMID:10079236)
RGD
PMID:10079236
MGI:1332253
NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
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Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
(MGI:3611958|PMID:16314491)
RGD
PMID:16314491
MGI:3611958
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
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Robo1
roundabout guidance receptor 1
involved_in
ISO
UniProtKB:Q7TPD3 (MGI:5913048|PMID:25691540)
RGD
PMID:25691540
MGI:5913048
NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
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Robo2
roundabout guidance receptor 2
involved_in
ISO
UniProtKB:O89026 (MGI:5913048|PMID:25691540)
RGD
PMID:25691540
MGI:5913048
NCBI chr11:11,062,866...12,618,793
Ensembl chr11:11,062,790...11,585,765
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Tbx2
T-box transcription factor 2
involved_in
ISO
(PMID:22130515)
RGD
PMID:22130515
NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
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Tbx20
T-box transcription factor 20
involved_in
ISO
(MGI:3604925|PMID:15843409), (MGI:5299248|PMID:21983003)
RGD
PMID:15843409 PMID:21983003
MGI:3604925 MGI:5299248
NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
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Tbx3
T-box transcription factor 3
involved_in
ISO IEA
(PMID:22130515) GO_REF:0000107
RGD Ensembl
PMID:22130515
GO_REF:0000107
NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
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Acvr1
activin A receptor type 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:3610266|PMID:16140292)
Ensembl RGD
PMID:16140292
GO_REF:0000107 MGI:3610266
NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
G
Gata5
GATA binding protein 5
involved_in
ISO
(MGI:5286818|PMID:21633169)
RGD
PMID:21633169
MGI:5286818
NCBI chr 3:175,701,278...175,709,465
Ensembl chr 3:175,701,280...175,709,465
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISO
(MGI:3609313|PMID:11390347)
RGD
PMID:11390347
MGI:3609313
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
G
Tgfbr2
transforming growth factor, beta receptor 2
involved_in
ISO
(MGI:4821522|PMID:20652948)
RGD
PMID:20652948
MGI:4821522
NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
G
Acvr1
activin A receptor type 1
involved_in
ISO
(MGI:3610266|PMID:16140292)
RGD
PMID:16140292
MGI:3610266
NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
G
Acvrl1
activin A receptor like type 1
involved_in
ISO
(MGI:2674189|PMID:12941632)
RGD
PMID:12941632
MGI:2674189
NCBI chr 7:142,769,942...142,787,336
Ensembl chr 7:142,776,252...142,787,335
G
Bmp2
bone morphogenetic protein 2
involved_in acts_upstream_of_or_within
ISO
(MGI:4837019|PMID:20890042) MGI:3583785 (MGI:3611958|PMID:16314491)
RGD
PMID:16314491 PMID:20890042
MGI:3611958 MGI:4837019
NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
G
Bmpr1a
bone morphogenetic protein receptor type 1A
involved_in
ISO
(MGI:2175930|PMID:11854453), (MGI:3040576|PMID:15073157)
RGD
PMID:11854453 PMID:15073157
MGI:2175930 MGI:3040576
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
G
Eng
endoglin
involved_in
ISO
(MGI:2674189|PMID:12941632), (MGI:4368063|PMID:19703439)
RGD
PMID:12941632 PMID:19703439
MGI:2674189 MGI:4368063
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
G
Hey1
hes-related family bHLH transcription factor with YRPW motif 1
involved_in
ISO
UniProtKB:Q9DBX7 (MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
G
Heyl
hes-related family bHLH transcription factor with YRPW motif-like
involved_in
ISO
UniProtKB:Q9WV93 (MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 5:140,923,914...140,940,905
Ensembl chr 5:140,923,914...140,940,905
G
Isl1
ISL LIM homeobox 1
involved_in
ISO
UniProtKB:Q02248 (MGI:3829137|PMID:17519333)
RGD
PMID:17519333
MGI:3829137
NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
G
Mdm2
MDM2 proto-oncogene
acts_upstream_of_or_within
ISO
MGI:107934|MGI:2385439 (MGI:5440773|PMID:22821713)
RGD
PMID:22821713
MGI:5440773
NCBI chr 7:60,719,060...60,743,618
Ensembl chr 7:60,719,066...60,743,328
G
Mdm4
MDM4 regulator of p53
acts_upstream_of_or_within
ISO
MGI:96952 (MGI:5440773|PMID:22821713)
RGD
PMID:22821713
MGI:5440773
NCBI chr13:49,786,776...49,828,780
Ensembl chr13:49,792,794...49,828,720
G
Nog
noggin
involved_in
IEA ISO
GO_REF:0000107 (MGI:3783944|PMID:17218603)
Ensembl RGD
PMID:17218603
GO_REF:0000107 MGI:3783944
NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
G
Nos3
nitric oxide synthase 3
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:Q01705 (MGI:6158784|PMID:27107132)
Ensembl RGD
PMID:27107132
GO_REF:0000107 MGI:6158784
NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
G
Notch1
notch receptor 1
involved_in
ISO
UniProtKB:P70313 (MGI:3027664|PMID:14701881), (MGI:6158784|PMID:27107132)
RGD
PMID:14701881 PMID:27107132
MGI:3027664 MGI:6158784
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
G
Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2385468|MGI:2450311 (MGI:3709802|PMID:11951052)
UniProt RGD
PMID:11951052
GO_REF:0000024 MGI:3709802
NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
G
Tbx2
T-box transcription factor 2
involved_in
ISO
(MGI:3487212|PMID:15459098)
RGD
PMID:15459098
MGI:3487212
NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
G
Tbx20
T-box transcription factor 20
involved_in
ISO
(MGI:3579960|PMID:15901664)
RGD
PMID:15901664
MGI:3579960
NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISO
(MGI:3609313|PMID:11390347), (MGI:3830400|PMID:19161227)
RGD
PMID:11390347 PMID:19161227
MGI:3609313 MGI:3830400
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
G
Twist1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857265 (MGI:3805126|PMID:18539270)
RGD
PMID:18539270
MGI:3805126
NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
G
Acvrl1
activin A receptor like type 1
NOT|involved_in
ISO
(MGI:2674189|PMID:12941632)
RGD
PMID:12941632
MGI:2674189
NCBI chr 7:142,769,942...142,787,336
Ensembl chr 7:142,776,252...142,787,335
G
Eng
endoglin
NOT|involved_in
ISO
(MGI:2674189|PMID:12941632)
RGD
PMID:12941632
MGI:2674189
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
G
Has2
hyaluronan synthase 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:1861536|PMID:10930438)
UniProt RGD
PMID:10930438
GO_REF:0000024 MGI:1861536
NCBI chr 7:96,438,046...96,464,049
Ensembl chr 7:96,438,046...96,464,049
G
Efna1
ephrin A1
involved_in
ISO
(MGI:4847981|PMID:20960543)
RGD
PMID:20960543
MGI:4847981
NCBI chr 2:188,588,808...188,596,156
Ensembl chr 2:188,588,796...188,596,222
G
Erg
ETS transcription factor ERG
acts_upstream_of_or_within
ISO
MGI:5443838 (MGI:5442628|PMID:22932696)
RGD
PMID:22932696
MGI:5442628
NCBI chr11:35,645,317...35,749,637
Ensembl chr11:35,646,116...35,749,594
G
Hey1
hes-related family bHLH transcription factor with YRPW motif 1
acts_upstream_of_or_within
ISO
MGI:1341884 (MGI:3530185|PMID:15680351)
RGD
PMID:15680351
MGI:3530185
NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
G
Hey2
hes-related family bHLH transcription factor with YRPW motif 2
acts_upstream_of_or_within
ISO
MGI:1341800 (MGI:3530185|PMID:15680351)
RGD
PMID:15680351
MGI:3530185
NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
G
Akna
AT-hook transcription factor
involved_in
ISO
(MGI:6294240|PMID:30787442)
RGD
PMID:30787442
MGI:6294240
NCBI chr 5:79,184,087...79,232,370
Ensembl chr 5:79,184,088...79,222,687
G
Bmp2
bone morphogenetic protein 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:3640731|PMID:16730346), (MGI:5299248|PMID:21983003) (PMID:15110716), (PMID:18184661)
UniProt RGD
PMID:15110716 PMID:16730346 PMID:18184661 PMID:21983003
GO_REF:0000024 MGI:3640731 MGI:5299248
NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
G
Cul7
cullin 7
involved_in
ISS ISO
GO_REF:0000024 (PMID:20139075)
UniProt RGD
PMID:20139075
GO_REF:0000024
NCBI chr 9:16,629,491...16,643,527
Ensembl chr 9:16,629,401...16,643,182
G
Ddx17
DEAD-box helicase 17
involved_in
ISO
(PMID:24910439)
RGD
PMID:24910439
NCBI chr 7:120,761,843...120,765,012
Ensembl chr 7:120,761,826...120,780,641
G
Ddx5
DEAD-box helicase 5
involved_in
ISO
(PMID:24910439)
RGD
PMID:24910439
NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
G
Dlg5
discs large MAGUK scaffold protein 5
involved_in
ISO
(PMID:28169360)
RGD
PMID:28169360
NCBI chr15:120,213...230,312
Ensembl chr15:120,372...228,977
G
Eng
endoglin
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
G
Epb41l5
erythrocyte membrane protein band 4.1 like 5
involved_in
ISO
MGI:3578147 (MGI:3714667|PMID:17507402), (MGI:3821807|PMID:18794329)
RGD
PMID:17507402 PMID:18794329
MGI:3714667 MGI:3821807
NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
G
Fam83d
family with sequence similarity 83, member D
involved_in
ISO
(PMID:24344117)
RGD
PMID:24344117
NCBI chr 3:155,269,344...155,288,612
Ensembl chr 3:155,269,347...155,288,533
G
Fgfr1
Fibroblast growth factor receptor 1
involved_in
ISO IEA
(PMID:26451614) GO_REF:0000107
RGD Ensembl
PMID:26451614
GO_REF:0000107
NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
G
Fgfr2
fibroblast growth factor receptor 2
IDA
RGD
PMID:7803853
RGD:632663
NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
G
Flna
filamin A
acts_upstream_of_or_within
ISO
MGI:1923816 (MGI:5085960|PMID:21709252)
RGD
PMID:21709252
MGI:5085960
NCBI chr X:156,460,785...156,487,245
Ensembl chr X:156,463,953...156,487,245
G
Gsk3b
glycogen synthase kinase 3 beta
involved_in
ISO ISS
(PMID:15448698) GO_REF:0000024
RGD UniProt
PMID:15448698
GO_REF:0000024
NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
G
Hif1a
hypoxia inducible factor 1 subunit alpha
involved_in
IEA ISO
GO_REF:0000107 (MGI:3772289|PMID:18037992)
Ensembl RGD
PMID:18037992
GO_REF:0000107 MGI:3772289
NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
G
Hmga2
high mobility group AT-hook 2
involved_in
ISO ISS
(PMID:18832382) GO_REF:0000024
RGD UniProt
PMID:18832382
GO_REF:0000024
NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
G
Hnrnpab
heterogeneous nuclear ribonucleoprotein A/B
involved_in
ISS ISO
GO_REF:0000024 (MGI:3698386|PMID:17273560)
HGNC-UCL RGD
PMID:17273560
GO_REF:0000024 MGI:3698386
NCBI chr10:34,955,713...34,961,662
Ensembl chr10:34,955,716...34,961,608
G
Lef1
lymphoid enhancer binding factor 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:2683382|PMID:14691138)
Ensembl RGD
PMID:14691138
GO_REF:0000107 MGI:2683382
NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
G
Lims1
LIM zinc finger domain containing 1
NOT|involved_in
ISO
(PMID:20926685)
RGD
PMID:20926685
NCBI chr20:27,895,981...28,004,767
Ensembl chr20:27,954,433...28,002,082
G
LOC103689931
heterogeneous nuclear ribonucleoprotein A/B
involved_in
ISS
GO_REF:0000024
HGNC-UCL
GO_REF:0000024
NCBI chr10:37,049,400...37,055,348
Ensembl chr10:37,049,677...37,055,282 Ensembl chr10:37,049,677...37,055,282
G
Loxl2
lysyl oxidase-like 2
involved_in
ISO ISS IEA
(PMID:16096638) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:16096638
GO_REF:0000024 GO_REF:0000107
NCBI chr15:51,276,022...51,365,238
Ensembl chr15:51,303,909...51,365,234
G
Loxl3
lysyl oxidase-like 3
involved_in
ISO
(PMID:16096638)
RGD
PMID:16096638
NCBI chr 4:113,866,782...113,883,713
Ensembl chr 4:113,866,804...113,883,477
G
Msx1
msh homeobox 1
involved_in
ISO
(MGI:4418636|PMID:11023873)
RGD
PMID:11023873
MGI:4418636
NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
G
Nfatc1
nuclear factor of activated T-cells 1
acts_upstream_of_or_within
ISO
MGI:2181762 (MGI:3053252|PMID:15339668)
RGD
PMID:15339668
MGI:3053252
NCBI chr18:77,203,517...77,322,690
Ensembl chr18:77,203,525...77,322,690
G
Nog
noggin
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:3783944|PMID:17218603) GO_REF:0000024
Ensembl RGD UniProt
PMID:17218603
GO_REF:0000024 GO_REF:0000107 MGI:3783944
NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
G
Notch1
notch receptor 1
involved_in acts_upstream_of_or_within
ISO
(PMID:17984306) MGI:1857230 (MGI:3027664|PMID:14701881)
RGD
PMID:14701881 PMID:17984306
MGI:3027664
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
G
Notch4
notch receptor 4
involved_in
ISO
(PMID:17984306)
RGD
PMID:17984306
NCBI chr20:4,329,794...4,353,868
Ensembl chr20:4,329,811...4,353,785
G
Ppp3r1
protein phosphatase 3, regulatory subunit B, alpha
acts_upstream_of_or_within
ISO
MGI:3044031 (MGI:3053252|PMID:15339668)
RGD
PMID:15339668
MGI:3053252
NCBI chr14:100,311,224...100,360,879
Ensembl chr14:100,311,173...100,360,879
G
Rbpj
recombination signal binding protein for immunoglobulin kappa J region
acts_upstream_of_or_within
ISO
MGI:1857411 (MGI:3027664|PMID:14701881)
RGD
PMID:14701881
MGI:3027664
NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
G
Rflnb
refilin B
acts_upstream_of_or_within
ISO
MGI:95556 (MGI:5085960|PMID:21709252)
RGD
PMID:21709252
MGI:5085960
NCBI chr10:64,196,103...64,202,380
Ensembl chr10:64,196,127...64,202,380
G
Rock1
Rho-associated coiled-coil containing protein kinase 1
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:P70336 (MGI:3513217|PMID:15464581)
Ensembl RGD
PMID:15464581
GO_REF:0000107 MGI:3513217
NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
G
Rock2
Rho-associated coiled-coil containing protein kinase 2
involved_in
ISO
UniProtKB:P70335 (MGI:3513217|PMID:15464581)
RGD
PMID:15464581
MGI:3513217
NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
G
Snai1
snail family transcriptional repressor 1
involved_in
TAS ISO
(MGI:1352954|PMID:10655586), (MGI:2153695|PMID:11689706), (MGI:5294539|PMID:18832382) (PMID:16096638)
RGD
PMID:10655586 PMID:11689706 PMID:16096638 PMID:18832382 , PMID:15155580
MGI:1352954 MGI:2153695 MGI:5294539 , RGD:1302246
NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
G
Snai2
snail family transcriptional repressor 2
involved_in acts_upstream_of_or_within
ISO
(PMID:17984306), (PMID:9182671) MGI:2447175 (MGI:3762325|PMID:17916597) (MGI:892810|PMID:9182671)
RGD
PMID:9182671 PMID:17916597 PMID:17984306
MGI:3762325 MGI:892810
NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
G
Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2429649 (MGI:3041362|PMID:15096597)
UniProt RGD
PMID:15096597
GO_REF:0000024 MGI:3041362
NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
G
Tgfb1
transforming growth factor, beta 1
involved_in
IDA ISO
(PMID:25893292), (PMID:29529050)
RGD
PMID:25893292 PMID:29529050 , PMID:10504497
RGD:1578678
NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:10092230), (PMID:18223299)
AgBase RGD
PMID:10092230 PMID:18223299
GO_REF:0000024
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
G
Tgfbr1
transforming growth factor, beta receptor 1
involved_in
ISO
(PMID:15761148)
RGD
PMID:15761148
NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
G
Tgfbr3
transforming growth factor beta receptor 3
involved_in
ISO IBA
(PMID:18184661) PMID:21873635
RGD
PMID:18184661 , PMID:21873635
RGD:13792537
NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
G
Tgfbr3l
transforming growth factor beta receptor 3 like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr12:2,540,494...2,545,315
Ensembl chr12:2,542,612...2,545,740
G
Trim28
tripartite motif-containing 28
involved_in
ISS ISO
GO_REF:0000024 (MGI:3698386|PMID:17273560)
HGNC-UCL RGD
PMID:17273560
GO_REF:0000024 MGI:3698386
NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
G
Trip10
thyroid hormone receptor interactor 10
IMP
RGD
PMID:23819628
RGD:11535143
NCBI chr 9:9,689,214...9,702,353
Ensembl chr 9:9,689,475...9,702,306
G
Wnt11
Wnt family member 11
acts_upstream_of_or_within
ISO
MGI:98958 (MGI:5634837|PMID:25813538)
RGD
PMID:25813538
MGI:5634837
NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
G
Wnt4
Wnt family member 4
involved_in
ISO IEA
(PMID:12841867) GO_REF:0000107
RGD Ensembl
PMID:12841867
GO_REF:0000107
NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
G
Wnt5a
Wnt family member 5A
involved_in
ISO
(PMID:12841867)
RGD
PMID:12841867
NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
G
Pdcd4
programmed cell death 4
involved_in
IGI
PMID:23441172
BHF-UCL
PMID:23441172
RGD:10400865
NCBI chr 1:274,616,625...274,648,204
Ensembl chr 1:274,625,224...274,648,204
G
Spry1
sprouty RTK signaling antagonist 1
involved_in
IGI
PMID:23441172
BHF-UCL
PMID:23441172
RGD:10400865
NCBI chr 2:124,400,689...124,405,331
Ensembl chr 2:124,400,679...124,405,331
G
Bmp4
bone morphogenetic protein 4
NOT|involved_in
ISO
(MGI:3814273|PMID:18924235)
RGD
PMID:18924235
MGI:3814273
NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
G
Eng
endoglin
involved_in
ISO
(MGI:4368063|PMID:19703439)
RGD
PMID:19703439
MGI:4368063
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
G
Fgf8
fibroblast growth factor 8
involved_in acts_upstream_of_or_within
ISO
(MGI:4359139|PMID:19509466) (MGI:5002778|PMID:21364285)
RGD
PMID:19509466 PMID:21364285
MGI:4359139 MGI:5002778
NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
G
Hey1
hes-related family bHLH transcription factor with YRPW motif 1
acts_upstream_of_or_within
ISO
MGI:1860511 (MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
G
Heyl
hes-related family bHLH transcription factor with YRPW motif-like
acts_upstream_of_or_within
ISO
MGI:1341800 (MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 5:140,923,914...140,940,905
Ensembl chr 5:140,923,914...140,940,905
G
Msx1
msh homeobox 1
acts_upstream_of_or_within
ISO
MGI:97169 (MGI:3810851|PMID:18667074)
RGD
PMID:18667074
MGI:3810851
NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
G
Msx2
msh homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:97168 (MGI:3810851|PMID:18667074)
Ensembl RGD
PMID:18667074
GO_REF:0000107 MGI:3810851
NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
G
Notch1
notch receptor 1
involved_in
ISO
(MGI:3027664|PMID:14701881)
RGD
PMID:14701881
MGI:3027664
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
G
Rbpj
recombination signal binding protein for immunoglobulin kappa J region
involved_in
ISO
(MGI:3027664|PMID:14701881)
RGD
PMID:14701881
MGI:3027664
NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
G
Smad4
SMAD family member 4
involved_in
IEA ISO
GO_REF:0000107 (MGI:4946551|PMID:21330551)
Ensembl RGD
PMID:21330551
GO_REF:0000107 MGI:4946551
NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
G
Snai1
snail family transcriptional repressor 1
involved_in
ISO
UniProtKB:Q3UZ96 (MGI:3808643|PMID:18663143)
RGD
PMID:18663143
MGI:3808643
NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
G
Snai2
snail family transcriptional repressor 2
acts_upstream_of_or_within
ISO
MGI:2447175 (MGI:3808643|PMID:18663143)
RGD
PMID:18663143
MGI:3808643
NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
G
Tmem100
transmembrane protein 100
acts_upstream_of_or_within
ISO
MGI:5432904 (MGI:5613881|PMID:25318679)
RGD
PMID:25318679
MGI:5613881
NCBI chr10:77,537,340...77,543,710
Ensembl chr10:77,537,340...77,543,192
G
Amh
anti-Mullerian hormone
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 7:11,775,155...11,777,503
Ensembl chr 7:11,775,155...11,777,503
G
Tspy1
testis specific protein, Y-linked 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr Y:151,941...156,587
Ensembl chr Y:151,937...155,263
G
Tgfbr2
transforming growth factor, beta receptor 2
involved_in
ISO
(MGI:3801267|PMID:17050629)
RGD
PMID:17050629
MGI:3801267
NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
G
Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
MGI:2158343 (MGI:3702797|PMID:16943278)
RGD
PMID:16943278
MGI:3702797
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
G
Fendrr
FOXF1 adjacent non-coding developmental regulatory RNA
acts_upstream_of_or_within
ISO
MGI:5470087 (MGI:5462100|PMID:23369715)
RGD
PMID:23369715
MGI:5462100
NCBI chr19:52,991,283...53,010,509
G
Mesp1
mesoderm posterior bHLH transcription factor 1
acts_upstream_of_or_within
ISO
(PMID:10393122)
RGD
PMID:10393122
NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
G
Tead1
TEA domain transcription factor 1
acts_upstream_of_or_within
ISO
MGI:103262|MGI:104904 (MGI:3773640|PMID:18332127)
RGD
PMID:18332127
MGI:3773640
NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061
G
Tead2
TEA domain transcription factor 2
acts_upstream_of_or_within
ISO
MGI:101876|MGI:103262 (MGI:3773640|PMID:18332127)
RGD
PMID:18332127
MGI:3773640
NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
G
Yap1
Yes1 associated transcriptional regulator
acts_upstream_of_or_within
ISO
MGI:101876|MGI:104904 (MGI:3773640|PMID:18332127)
RGD
PMID:18332127
MGI:3773640
NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
G
Foxf1
forkhead box F1
acts_upstream_of_or_within
ISO
MGI:1929432 (MGI:1928688|PMID:11124112)
RGD
PMID:11124112
MGI:1928688
NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
G
Ctnnb1
catenin beta 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2148567 (MGI:3801531|PMID:18533146)
Ensembl RGD
PMID:18533146
GO_REF:0000107 MGI:3801531
NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
G
Dppa4
developmental pluripotency associated 4
acts_upstream_of_or_within
ISO
MGI:2157523|MGI:5298639 (MGI:5298147|PMID:21896782)
RGD
PMID:21896782
MGI:5298147
NCBI chr11:55,233,416...55,242,534
Ensembl chr11:55,234,545...55,240,241
G
Fgf9
fibroblast growth factor 9
acts_upstream_of_or_within
ISO
MGI:2135961 (MGI:3801531|PMID:18533146)
RGD
PMID:18533146
MGI:3801531
NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
G
Fgfr1
Fibroblast growth factor receptor 1
acts_upstream_of_or_within
ISO
MGI:95523 (MGI:3801531|PMID:18533146)
RGD
PMID:18533146
MGI:3801531
NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
G
Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:3629660|MGI:95522 (MGI:3688953|PMID:16989802), (MGI:3801531|PMID:18533146)
RGD
PMID:16989802 PMID:18533146
MGI:3688953 MGI:3801531
NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
G
Hoxa5
homeo box A5
acts_upstream_of_or_within
ISO
MGI:2150397 (MGI:1195049|PMID:9441679)
RGD
PMID:9441679
MGI:1195049
G
Ptk7
protein tyrosine kinase 7
acts_upstream_of_or_within
ISO
MGI:3640803 (MGI:4830023|PMID:20704721)
RGD
PMID:20704721
MGI:4830023
NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857796 (MGI:1277744|PMID:9731532)
Ensembl RGD
PMID:9731532
GO_REF:0000107 MGI:1277744
NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
G
Wnt11
Wnt family member 11
involved_in
ISO
(PMID:9757009)
RGD
PMID:9757009
NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
G
Wnt7b
Wnt family member 7B
acts_upstream_of_or_within
ISO
MGI:3793280 (MGI:3788965|PMID:18367557)
RGD
PMID:18367557
MGI:3788965
NCBI chr 7:126,423,418...126,465,724
Ensembl chr 7:126,420,656...126,465,723
G
Alx1
ALX homeobox 1
acts_upstream_of_or_within
ISO
MGI:1857553 (MGI:81193|PMID:8673125)
RGD
PMID:8673125
MGI:81193
NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458
G
Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2156165 (MGI:81253|PMID:8623928)
Ensembl RGD
PMID:8623928
GO_REF:0000107 MGI:81253
NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
G
Foxc1
forkhead box C1
involved_in
ISO
(MGI:5569870|PMID:24590069)
RGD
PMID:24590069
MGI:5569870
NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
G
Hey1
hes-related family bHLH transcription factor with YRPW motif 1
involved_in
ISO
UniProtKB:Q9DBX7 (MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
G
Hey2
hes-related family bHLH transcription factor with YRPW motif 2
involved_in
ISO
(MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
G
Heyl
hes-related family bHLH transcription factor with YRPW motif-like
involved_in
ISO
UniProtKB:Q9WV93 (MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 5:140,923,914...140,940,905
Ensembl chr 5:140,923,914...140,940,905
G
Notch1
notch receptor 1
involved_in
ISO
(MGI:3783952|PMID:17303760)
RGD
PMID:17303760
MGI:3783952
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
G
Tbx20
T-box transcription factor 20
involved_in
IEA ISO
GO_REF:0000107 (MGI:5299248|PMID:21983003)
Ensembl RGD
PMID:21983003
GO_REF:0000107 MGI:5299248
NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
G
Bmp2
bone morphogenetic protein 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:9693150)
UniProt RGD
PMID:9693150
GO_REF:0000024
NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
G
Bmp7
bone morphogenetic protein 7
involved_in
ISO
(PMID:9693150)
RGD
PMID:9693150
NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
G
Fgfr1
Fibroblast growth factor receptor 1
acts_upstream_of_or_within
ISO
MGI:95523 (MGI:3620275|PMID:16442091)
RGD
PMID:16442091
MGI:3620275
NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
G
Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:95522 (MGI:3620275|PMID:16442091)
RGD
PMID:16442091
MGI:3620275
NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
G
Foxc1
forkhead box C1
acts_upstream_of_or_within
ISO
MGI:1857869 (MGI:1261705|PMID:9635428)
RGD
PMID:9635428
MGI:1261705
NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
G
Hmga2
high mobility group AT-hook 2
involved_in
ISO ISS
(PMID:17624332), (PMID:7606786) GO_REF:0000024
RGD UniProt
PMID:7606786 PMID:17624332
GO_REF:0000024
NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
G
Isl1
ISL LIM homeobox 1
acts_upstream_of_or_within
ISO
MGI:2182246 (MGI:85032|PMID:9000074)
RGD
PMID:9000074
MGI:85032
NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
G
LOC103690035
TGF-beta receptor type-1-like
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 5:64,565,358...64,585,219
Ensembl chr 5:64,566,804...64,584,309
G
Nog
noggin
acts_upstream_of_or_within
IMP ISO
MGI:1862000 (MGI:3771245|PMID:18028901)
RGD
PMID:18028901 , PMID:21238590
MGI:3771245 , RGD:12801486
NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
G
Plaur
plasminogen activator, urokinase receptor
IMP
RGD
PMID:11798065
RGD:729659
NCBI chr 1:81,328,171...81,344,954
Ensembl chr 1:81,328,183...81,344,708
G
Tgfbr1
transforming growth factor, beta receptor 1
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
G
Wwtr1
WW domain containing transcription regulator 1
acts_upstream_of_or_within
ISO
MGI:3759999 (MGI:3758168|PMID:17636028)
RGD
PMID:17636028
MGI:3758168
NCBI chr 2:147,577,149...147,693,033
Ensembl chr 2:147,577,089...147,693,082
G
Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(MGI:4834113|PMID:20404326)
RGD
PMID:20404326
MGI:4834113
NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
G
Ranbp3l
RAN binding protein 3-like
involved_in
ISO
(MGI:5883200|PMID:25755279)
RGD
PMID:25755279
MGI:5883200
NCBI chr 2:58,221,773...58,458,072
Ensembl chr 2:58,448,917...58,458,517
G
Amer1
APC membrane recruitment protein 1
acts_upstream_of_or_within
ISO
MGI:2446599|MGI:5086003 (MGI:5013668|PMID:21571217)
RGD
PMID:21571217
MGI:5013668
NCBI chr X:64,686,620...64,702,504
Ensembl chr X:64,686,623...64,702,441
G
Bmp4
bone morphogenetic protein 4
involved_in
IEA ISO
GO_REF:0000107 (MGI:3710018|PMID:17442697)
Ensembl RGD
PMID:17442697
GO_REF:0000107 MGI:3710018
NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
G
Six2
SIX homeobox 2
involved_in
ISO
(MGI:3691408|PMID:17036046)
RGD
PMID:17036046
MGI:3691408
NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
G
Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:95523 (MGI:3688953|PMID:16989802)
RGD
PMID:16989802
MGI:3688953
NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
G
Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:1099809 (MGI:3688953|PMID:16989802)
RGD
PMID:16989802
MGI:3688953
NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
G
Bmp4
bone morphogenetic protein 4
involved_in
ISO
(MGI:3710018|PMID:17442697)
RGD
PMID:17442697
MGI:3710018
NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
G
Acta1
actin, alpha 1, skeletal muscle
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr19:56,674,072...56,677,084
Ensembl chr19:56,674,074...56,677,084
G
Acta2
actin alpha 2, smooth muscle
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 1:252,537,614...252,550,394
Ensembl chr 1:252,537,615...252,550,394
G
Actc1
actin, alpha, cardiac muscle 1
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 3:105,507,403...105,512,939
Ensembl chr 3:105,507,403...105,512,939
G
Actg2
actin gamma 2, smooth muscle
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 4:115,215,160...115,239,746
Ensembl chr 4:115,215,060...115,239,723
G
Foxf1
forkhead box F1
acts_upstream_of_or_within
ISO
MGI:2179135 (MGI:3709924|PMID:17261592)
RGD
PMID:17261592
MGI:3709924
NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
G
Eomes
eomesodermin
involved_in
ISO
(MGI:3772748|PMID:18171685)
RGD
PMID:18171685
MGI:3772748
NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
G
Tasor
transcription activation suppressor
involved_in
ISO
(MGI:6109647|PMID:28839193)
RGD
PMID:28839193
MGI:6109647
NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
G
Wnt5a
Wnt family member 5A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:101948 (MGI:5634837|PMID:25813538)
Ensembl RGD
PMID:25813538
GO_REF:0000107 MGI:5634837
NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
G
Osr1
odd-skipped related transcription factor 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:3826342|PMID:18835385)
UniProt RGD
PMID:18835385
GO_REF:0000024 MGI:3826342
NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
G
Pkd2
polycystin 2, transient receptor potential cation channel
involved_in
ISO
(PMID:11891195)
RGD
PMID:11891195
NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
G
Osr1
odd-skipped related transcription factor 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:3697513|PMID:16790474)
UniProt RGD
PMID:16790474
GO_REF:0000024 MGI:3697513
NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
G
Pax2
paired box 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:3663200|PMID:16368682)
UniProt RGD
PMID:16368682
GO_REF:0000024 MGI:3663200
NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
G
Tcf21
transcription factor 21
involved_in
ISS ISO
GO_REF:0000024 (MGI:2651771|PMID:12619136)
UniProt RGD
PMID:12619136
GO_REF:0000024 MGI:2651771
NCBI chr 1:23,906,717...23,909,576
Ensembl chr 1:23,906,717...23,909,566
G
Bmp7
bone morphogenetic protein 7
involved_in
ISO
UniProtKB:P97471 (MGI:3623046|PMID:15342483)
RGD
PMID:15342483
MGI:3623046
NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
G
Shh
sonic hedgehog signaling molecule
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:2388350|PMID:12399320) GO_REF:0000107
UniProt RGD Ensembl
PMID:12399320
GO_REF:0000024 GO_REF:0000107 MGI:2388350
NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
G
Osr1
odd-skipped related transcription factor 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:5009359|PMID:20171952)
UniProt RGD
PMID:20171952
GO_REF:0000024 MGI:5009359
NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
G
Pax2
paired box 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5009359|PMID:20171952)
UniProt RGD
PMID:20171952
GO_REF:0000024 MGI:5009359
NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
G
Pdgfrb
platelet derived growth factor receptor beta
involved_in
IEP
PMID:10734101
UniProt
PMID:10734101
RGD:8554631
NCBI chr18:56,364,586...56,406,381
Ensembl chr18:56,364,620...56,406,381
G
Pkd2
polycystin 2, transient receptor potential cation channel
involved_in
ISO
(PMID:11891195)
RGD
PMID:11891195
NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
G
Six1
SIX homeobox 1
involved_in
ISO
(MGI:5009396|PMID:17300925)
RGD
PMID:17300925
MGI:5009396
NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
G
Six4
SIX homeobox 4
involved_in
ISO
(MGI:5009396|PMID:17300925)
RGD
PMID:17300925
MGI:5009396
NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529
G
Wt1
WT1 transcription factor
involved_in
ISS ISO
GO_REF:0000024 (MGI:62488|PMID:8395349)
UniProt RGD
PMID:8395349
GO_REF:0000024 MGI:62488
NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
G
Bmp7
bone morphogenetic protein 7
involved_in
ISO
UniProtKB:P97471 (MGI:3623046|PMID:15342483)
RGD
PMID:15342483
MGI:3623046
NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
G
Osr1
odd-skipped related transcription factor 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:3697513|PMID:16790474)
UniProt RGD
PMID:16790474
GO_REF:0000024 MGI:3697513
NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
G
Smad4
SMAD family member 4
involved_in
IEA ISO
GO_REF:0000107 (MGI:3623046|PMID:15342483)
Ensembl RGD
PMID:15342483
GO_REF:0000107 MGI:3623046
NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
G
Adipor1
adiponectin receptor 1
involved_in
ISO
(PMID:23776679)
RGD
PMID:23776679
NCBI chr13:51,240,470...51,260,233
Ensembl chr13:51,240,911...51,260,228
G
Dab2ip
DAB2 interacting protein
involved_in
ISO IEA ISS
(PMID:20080667), (PMID:20154697) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:20080667 PMID:20154697
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:14,889,263...15,060,286
Ensembl chr 3:14,889,510...15,060,286
G
Dact3
dishevelled-binding antagonist of beta-catenin 3
acts_upstream_of_or_within
ISO
MGI:5515616 (MGI:5503293|PMID:23580654)
RGD
PMID:23580654
MGI:5503293
NCBI chr 1:78,800,754...78,812,483
Ensembl chr 1:78,800,754...78,812,483
G
Efna1
ephrin A1
involved_in
ISO
(MGI:4847981|PMID:20960543)
RGD
PMID:20960543
MGI:4847981
NCBI chr 2:188,588,808...188,596,156
Ensembl chr 2:188,588,796...188,596,222
G
Foxa1
forkhead box A1
involved_in
IEA ISO
GO_REF:0000107 (PMID:20160041)
Ensembl RGD
PMID:20160041
GO_REF:0000107
NCBI chr 6:78,516,579...78,549,669
Ensembl chr 6:78,545,804...78,549,669
G
Foxa2
forkhead box A2
involved_in
IEA ISO
GO_REF:0000107 (PMID:20160041)
Ensembl RGD
PMID:20160041
GO_REF:0000107
NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
G
Gata3
GATA binding protein 3
acts_upstream_of
ISO
(PMID:26451614)
RGD
PMID:26451614
NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
G
Hpn
hepsin
involved_in
ISS IEA IBA ISO
GO_REF:0000024 GO_REF:0000107 PMID:21873635 (PMID:19843851)
UniProt Ensembl RGD
PMID:19843851 , PMID:21873635
GO_REF:0000024 GO_REF:0000107, RGD:13792537
NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967
G
Il17rd
interleukin 17 receptor D
involved_in
ISO
(MGI:6414689|PMID:25576668)
RGD
PMID:25576668
MGI:6414689
NCBI chr16:2,670,471...2,737,271
Ensembl chr16:2,670,618...2,731,808
G
Ldlrad4
low density lipoprotein receptor class A domain containing 4
involved_in
ISO
(PMID:24627487)
RGD
PMID:24627487
NCBI chr18:63,717,423...64,045,224
Ensembl chr18:63,882,610...64,044,023
G
Mad2l2
mitotic arrest deficient 2 like 2
involved_in
ISO
(PMID:19443654)
RGD
PMID:19443654
NCBI chr 5:164,943,183...164,956,255
Ensembl chr 5:164,950,917...164,956,255
G
Nkx2-1
NK2 homeobox 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:19293183)
Ensembl RGD
PMID:19293183
GO_REF:0000107
NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
G
Ovol2
ovo-like zinc finger 2
involved_in
ISO
(MGI:5574425|PMID:24735879), (MGI:6284898|PMID:28455959)
RGD
PMID:24735879 PMID:28455959
MGI:5574425 MGI:6284898
NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
G
Pbld1
phenazine biosynthesis-like protein domain containing 1
involved_in
ISO
(PMID:23687415)
RGD
PMID:23687415
NCBI chr20:27,103,300...27,118,650
Ensembl chr20:27,103,317...27,117,663
G
Ppp2ca
protein phosphatase 2 catalytic subunit alpha
involved_in
ISO
(PMID:20080667)
RGD
PMID:20080667
NCBI chr10:37,534,449...37,554,861
Ensembl chr10:37,535,871...37,554,664
G
Pten
phosphatase and tensin homolog
involved_in
ISO
(PMID:27919618)
RGD
PMID:27919618
NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
G
Sdhaf2
succinate dehydrogenase complex assembly factor 2
involved_in acts_upstream_of_or_within
ISO
(PMID:23983127) (MGI:5529200|PMID:23983127)
RGD
PMID:23983127
MGI:5529200
NCBI chr 1:226,543,671...226,572,414
Ensembl chr 1:226,547,531...226,572,349
G
Sfrp1
secreted frizzled-related protein 1
involved_in
ISO IEA
(PMID:19095296) GO_REF:0000107
RGD Ensembl
PMID:19095296
GO_REF:0000107
NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
G
Sfrp2
secreted frizzled-related protein 2
involved_in
ISO
(PMID:19095296)
RGD
PMID:19095296
NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
G
Spred1
sprouty-related, EVH1 domain containing 1
involved_in
ISO
(MGI:6414689|PMID:25576668)
RGD
PMID:25576668
MGI:6414689
NCBI chr 3:108,795,337...108,861,650
Ensembl chr 3:108,795,235...108,857,556
G
Spred2
sprouty-related, EVH1 domain containing 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:6414689|PMID:25576668)
UniProt RGD
PMID:25576668
GO_REF:0000024 MGI:6414689
NCBI chr14:104,268,362...104,290,206
Ensembl chr14:104,191,517...104,290,456
G
Spred3
sprouty-related, EVH1 domain containing 3
involved_in
ISO
(MGI:6414689|PMID:25576668)
RGD
PMID:25576668
MGI:6414689
NCBI chr 1:88,101,213...88,112,719
Ensembl chr 1:88,103,719...88,112,683
G
Spry1
sprouty RTK signaling antagonist 1
involved_in
ISO
(MGI:6414689|PMID:25576668)
RGD
PMID:25576668
MGI:6414689
NCBI chr 2:124,400,689...124,405,331
Ensembl chr 2:124,400,679...124,405,331
G
Spry2
sprouty RTK signaling antagonist 2
involved_in
ISO
(MGI:6414689|PMID:25576668)
RGD
PMID:25576668
MGI:6414689
NCBI chr15:90,172,769...90,177,823
Ensembl chr15:90,172,975...90,175,802
G
Strap
serine/threonine kinase receptor associated protein
involved_in
ISO
(PMID:23687415)
RGD
PMID:23687415
NCBI chr 4:171,730,629...171,744,877
Ensembl chr 4:171,730,635...171,745,377
G
Tgfbr3
transforming growth factor beta receptor 3
acts_upstream_of_or_within
ISO
(MGI:3762085|PMID:17823118)
RGD
PMID:17823118
MGI:3762085
NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
G
Trim62
tripartite motif-containing 62
acts_upstream_of_or_within
ISO
MGI:5538538 (MGI:5585203|PMID:24890125)
RGD
PMID:24890125
MGI:5585203
NCBI chr 5:147,068,725...147,099,024
Ensembl chr 5:147,069,616...147,095,242
G
Tsc2
TSC complex subunit 2
IMP
RGD
PMID:20813961
RGD:11568680
NCBI chr10:13,962,006...13,996,684
Ensembl chr10:13,961,947...13,996,584
G
Usf3
upstream transcription factor family member 3
involved_in
ISO
(PMID:28011713)
RGD
PMID:28011713
NCBI chr11:61,427,140...61,499,668
Ensembl chr11:61,432,064...61,499,557
G
Vasn
vasorin
involved_in
ISO
(PMID:21170088)
RGD
PMID:21170088
NCBI chr10:11,121,041...11,131,548
Ensembl chr10:11,121,041...11,131,548
G
Vegfa
vascular endothelial growth factor A
involved_in
ISO
(MGI:5502250|PMID:23863481)
RGD
PMID:23863481
MGI:5502250
NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
G
Znf750
zinc finger protein 750
involved_in
ISO
(PMID:32042337)
RGD
PMID:32042337
NCBI chr10:110,698,581...110,701,222
Ensembl chr10:110,698,891...110,701,137
G
Nog
noggin
involved_in
IEA ISO
GO_REF:0000107 (MGI:3783944|PMID:17218603)
Ensembl RGD
PMID:17218603
GO_REF:0000107 MGI:3783944
NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISO
(MGI:3830400|PMID:19161227)
RGD
PMID:19161227
MGI:3830400
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
G
Fuz
fuzzy planar cell polarity protein
involved_in
ISS ISO
GO_REF:0000024 (MGI:5498583|PMID:23806618)
UniProt RGD
PMID:23806618
GO_REF:0000024 MGI:5498583
NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
G
Cer1
cerberus 1, DAN family BMP antagonist
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
G
Dand5
DAN domain BMP antagonist family member 5
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:25,929,704...25,937,852
Ensembl chr19:25,930,601...25,936,026
G
Foxd1
forkhead box D1
involved_in
IEA ISO
GO_REF:0000107 (MGI:3525902|PMID:15634693)
Ensembl RGD
PMID:15634693
GO_REF:0000107 MGI:3525902
NCBI chr 2:28,460,068...28,462,488
Ensembl chr 2:28,460,068...28,462,488
G
Bmp7
bone morphogenetic protein 7
involved_in
ISO
UniProtKB:P97471 (MGI:3623046|PMID:15342483)
RGD
PMID:15342483
MGI:3623046
NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
G
Smad4
SMAD family member 4
involved_in
IEA ISO
GO_REF:0000107 (MGI:3623046|PMID:15342483)
Ensembl RGD
PMID:15342483
GO_REF:0000107 MGI:3623046
NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
G
Aldh1a2
aldehyde dehydrogenase 1 family, member A2
acts_upstream_of_or_within
ISO
MGI:1096359|MGI:1857891|MGI:2679699 (MGI:3612223|PMID:16368932), (MGI:3703483|PMID:17067568)
RGD
PMID:16368932 PMID:17067568
MGI:3612223 MGI:3703483
NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
G
Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
(MGI:4366654|PMID:19793887)
RGD
PMID:19793887
MGI:4366654
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
G
Cdh2
cadherin 2
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:6216737|PMID:26750727) GO_REF:0000024
Ensembl RGD UniProt
PMID:26750727
GO_REF:0000024 GO_REF:0000107 MGI:6216737
NCBI chr18:8,146,971...8,366,037
Ensembl chr18:8,146,971...8,360,684
G
Cyp26a1
cytochrome P450, family 26, subfamily a, polypeptide 1
acts_upstream_of_or_within
ISO
MGI:2679699 (MGI:3703483|PMID:17067568)
RGD
PMID:17067568
MGI:3703483
NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729
G
Cyp26c1
cytochrome P450, family 26, subfamily C, polypeptide 1
acts_upstream_of_or_within
ISO
MGI:1096359 (MGI:3703483|PMID:17067568)
RGD
PMID:17067568
MGI:3703483
NCBI chr 1:256,369,410...256,380,649
Ensembl chr 1:256,370,850...256,378,335
G
Edn1
endothelin 1
acts_upstream_of_or_within
ISO
MGI:1857637 (MGI:1277800|PMID:9671575), (MGI:3510064|PMID:15327783)
RGD
PMID:9671575 PMID:15327783
MGI:1277800 MGI:3510064
NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
G
Ednra
endothelin receptor type A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857473 (MGI:1201717|PMID:9449664), (MGI:3056210|PMID:15306564), (MGI:3510064|PMID:15327783)
Ensembl RGD
PMID:9449664 PMID:15306564 PMID:15327783
GO_REF:0000107 MGI:1201717 MGI:3056210 MGI:3510064
NCBI chr19:33,928,356...33,991,703
Ensembl chr19:33,928,356...33,991,703
G
Fam172a
family with sequence similarity 172, member A
involved_in
ISO
(MGI:6113784|PMID:29311329)
RGD
PMID:29311329
MGI:6113784
NCBI chr 2:4,942,795...5,547,744
Ensembl chr 2:4,942,775...5,545,144
G
Foxc1
forkhead box C1
acts_upstream_of_or_within
ISO
MGI:1347481 (MGI:3701735|PMID:16839542)
RGD
PMID:16839542
MGI:3701735
NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
G
Foxc2
forkhead box C2
acts_upstream_of_or_within
ISO
MGI:1347466 (MGI:3701735|PMID:16839542)
RGD
PMID:16839542
MGI:3701735
NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
G
Hand2
heart and neural crest derivatives expressed 2
acts_upstream_of_or_within
ISO
MGI:1857639 (MGI:1277800|PMID:9671575)
RGD
PMID:9671575
MGI:1277800
NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
G
Kbtbd8
kelch repeat and BTB domain containing 8
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:26399832) GO_REF:0000107
UniProt RGD Ensembl
PMID:26399832
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:127,164,728...127,177,537
Ensembl chr 4:127,164,453...127,177,477
G
Klhl12
kelch-like family member 12
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:27716508)
UniProt Ensembl RGD
PMID:27716508
GO_REF:0000024 GO_REF:0000107
NCBI chr13:51,280,933...51,314,753
Ensembl chr13:51,282,684...51,314,797
G
Mapk1
mitogen activated protein kinase 1
acts_upstream_of_or_within
ISO
MGI:1346859 (MGI:3832113|PMID:18952847)
RGD
PMID:18952847
MGI:3832113
NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
G
Mapk3
mitogen activated protein kinase 3
acts_upstream_of_or_within
ISO
MGI:1346858 (MGI:3832113|PMID:18952847)
RGD
PMID:18952847
MGI:3832113
NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
G
Nolc1
nucleolar and coiled-body phosphoprotein 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:26399832)
UniProt RGD
PMID:26399832
GO_REF:0000024
NCBI chr 1:265,829,055...265,839,819
Ensembl chr 1:265,829,108...265,839,818
G
Pdcd6
programmed cell death 6
involved_in
ISO ISS
(PMID:27716508) GO_REF:0000024
RGD UniProt
PMID:27716508
GO_REF:0000024
NCBI chr 1:31,576,183...31,591,852
Ensembl chr 1:31,576,183...31,591,849
G
Pef1
penta-EF hand domain containing 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:27716508)
UniProt RGD
PMID:27716508
GO_REF:0000024
NCBI chr 5:148,320,610...148,343,876
Ensembl chr 5:148,320,438...148,343,886
G
Rdh10
retinol dehydrogenase 10
acts_upstream_of_or_within
ISO
(MGI:3709664|PMID:17473173)
RGD
PMID:17473173
MGI:3709664
NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
G
Snai2
snail family transcriptional repressor 2
involved_in
ISO
(PMID:12444107)
RGD
PMID:12444107
NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
G
Sox11
SRY-box transcription factor 11
involved_in
ISS ISO
GO_REF:0000024 (MGI:5285157|PMID:20596238)
UniProt RGD
PMID:20596238
GO_REF:0000024 MGI:5285157
NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
G
Sox8
SRY-box transcription factor 8
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
G
Sox9
SRY-box transcription factor 9
acts_upstream_of_or_within
ISO
MGI:3041881 (MGI:3613316|PMID:15691760)
RGD
PMID:15691760
MGI:3613316
NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
G
Tcof1
treacle ribosome biogenesis factor 1
involved_in
ISO
(PMID:26399832)
RGD
PMID:26399832
NCBI chr18:56,081,863...56,115,719
Ensembl chr18:56,082,195...56,115,593
G
Tfap2a
transcription factor AP-2 alpha
acts_upstream_of_or_within
ISO
MGI:2176682 (MGI:80519|PMID:8622766)
RGD
PMID:8622766
MGI:80519
NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
G
Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(MGI:5907444|PMID:26295701)
RGD
PMID:26295701
MGI:5907444
NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
G
Frzb
frizzled-related protein
acts_upstream_of_or_within
ISO
(PMID:10654605)
RGD
PMID:10654605
NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772
G
Htr2b
5-hydroxytryptamine receptor 2B
involved_in
ISS ISO
GO_REF:0000024 (MGI:707955|PMID:9165122)
UniProt RGD
PMID:9165122
GO_REF:0000024 MGI:707955
NCBI chr 9:93,112,781...93,130,135
Ensembl chr 9:93,112,805...93,125,014
G
Lrp6
LDL receptor related protein 6
involved_in
IBA ISO
PMID:21873635 (PMID:11029007)
RGD
PMID:11029007 , PMID:21873635
RGD:13792537
NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
G
Mef2c
myocyte enhancer factor 2C
involved_in
ISS ISO
GO_REF:0000024 (MGI:5049797|PMID:21610032)
UniProt RGD
PMID:21610032
GO_REF:0000024 MGI:5049797
NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
G
Smad4
SMAD family member 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:4366654|PMID:19793887)
Ensembl RGD
PMID:19793887
GO_REF:0000107 MGI:4366654
NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
G
Wnt10a
Wnt family member 10A
acts_upstream_of_or_within
ISO
(MGI:3712614|PMID:17286598)
RGD
PMID:17286598
MGI:3712614
NCBI chr 9:82,053,581...82,066,047
Ensembl chr 9:82,053,581...82,066,047
G
Sfrp1
secreted frizzled-related protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3045799 (MGI:4437369|PMID:20130188)
Ensembl RGD
PMID:20130188
GO_REF:0000107 MGI:4437369
NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
G
Gsc
goosecoid homeobox
involved_in
ISO
(PMID:24290375)
RGD
PMID:24290375
NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220
G
Acvr1
activin A receptor type 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2651395 (MGI:3045641|PMID:15226263)
Ensembl RGD
PMID:15226263
GO_REF:0000107 MGI:3045641
NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
G
Alx1
ALX homeobox 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458
G
Anxa6
annexin A6
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:40,320,581...40,375,605
Ensembl chr10:40,320,581...40,375,605
G
Cfl1
cofilin 1
acts_upstream_of_or_within
ISO
MGI:3574399 (MGI:3530675|PMID:15649475)
RGD
PMID:15649475
MGI:3530675
NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
G
Coro1c
coronin 1C
involved_in
IBA ISO
PMID:21873635 (PMID:25074804)
RGD
PMID:25074804 , PMID:21873635
RGD:13792537
NCBI chr12:48,481,741...48,554,054
Ensembl chr12:48,481,750...48,554,052
G
Edn3
endothelin 3
acts_upstream_of_or_within
ISO
MGI:1856392 (MGI:1267304|PMID:9624616)
RGD
PMID:9624616
MGI:1267304
NCBI chr 3:172,856,730...172,879,276
Ensembl chr 3:172,856,733...172,880,450
G
Ednrb
endothelin receptor type B
acts_upstream_of_or_within
ISO
(MGI:1349495|PMID:10591209)
RGD
PMID:10591209
MGI:1349495
NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
G
Efnb1
ephrin B1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3039290 (MGI:3037600|PMID:15037550)
Ensembl RGD
PMID:15037550
GO_REF:0000107 MGI:3037600
NCBI chr X:68,891,227...68,904,034
Ensembl chr X:68,891,227...68,904,038
G
Erbb4
erb-b2 receptor tyrosine kinase 4
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:1352955|PMID:10655590) GO_REF:0000107
UniProt RGD Ensembl
PMID:10655590
GO_REF:0000024 GO_REF:0000107 MGI:1352955
NCBI chr 9:75,021,790...76,178,936
Ensembl chr 9:75,021,790...75,528,644
G
Fgf19
fibroblast growth factor 19
acts_upstream_of_or_within
ISO
MGI:3044957 (MGI:3575218|PMID:15789410)
RGD
PMID:15789410
MGI:3575218
NCBI chr 1:218,058,405...218,061,693
Ensembl chr 1:218,058,405...218,061,693
G
Gbx2
gastrulation brain homeobox 2
acts_upstream_of_or_within
ISO
MGI:1857634 (MGI:3588904|PMID:15996652), (MGI:4358009|PMID:19700621), (MGI:5478665|PMID:23144817)
RGD
PMID:15996652 PMID:19700621 PMID:23144817
MGI:3588904 MGI:4358009 MGI:5478665
NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
G
Gdnf
glial cell derived neurotrophic factor
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (PMID:15242795)
Ensembl UniProt RGD
PMID:15242795
GO_REF:0000024 GO_REF:0000107
NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
G
Hif1a
hypoxia inducible factor 1 subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2179429 (MGI:3607736|PMID:14659802)
Ensembl RGD
PMID:14659802
GO_REF:0000107 MGI:3607736
NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
G
Htr2b
5-hydroxytryptamine receptor 2B
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:707955|PMID:9165122) GO_REF:0000024
Ensembl RGD UniProt
PMID:9165122
GO_REF:0000024 GO_REF:0000107 MGI:707955
NCBI chr 9:93,112,781...93,130,135
Ensembl chr 9:93,112,805...93,125,014
G
Isl1
ISL LIM homeobox 1
acts_upstream_of_or_within
ISO
MGI:108075 (MGI:3640718|PMID:16687132)
RGD
PMID:16687132
MGI:3640718
NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
G
Kitlg
KIT ligand
acts_upstream_of_or_within
ISO
(MGI:1934508|PMID:11401406)
RGD
PMID:11401406
MGI:1934508
NCBI chr 7:42,269,784...42,351,054
Ensembl chr 7:42,269,784...42,351,054
G
Lama5
laminin subunit alpha 5
acts_upstream_of_or_within
ISO
MGI:1934917 (MGI:3611396|PMID:16316641)
RGD
PMID:16316641
MGI:3611396
NCBI chr 3:175,553,042...175,601,112
Ensembl chr 3:175,553,045...175,601,127
G
Nrp2
neuropilin 2
acts_upstream_of_or_within
ISO
MGI:2137037 (MGI:3613099|PMID:16319111)
RGD
PMID:16319111
MGI:3613099
NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
G
Nrtn
neurturin
involved_in
ISO
(PMID:15242795)
RGD
PMID:15242795
NCBI chr 9:10,299,881...10,306,599
Ensembl chr 9:10,305,470...10,306,597
G
Ovol2
ovo-like zinc finger 2
acts_upstream_of_or_within
ISO
MGI:3522498 (MGI:3618450|PMID:16423343)
RGD
PMID:16423343
MGI:3618450
NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
G
Pax3
paired box 3
acts_upstream_of_or_within
ISO
MGI:3043030 (MGI:3056222|PMID:15384171)
RGD
PMID:15384171
MGI:3056222
NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
G
Pax6
paired box 6
IMP
RGD
PMID:9079035
RGD:8552342
NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
G
Phactr4
phosphatase and actin regulator 4
involved_in
IBA ISO
PMID:21873635 (MGI:5302129|PMID:22215812)
RGD
PMID:22215812 , PMID:21873635
MGI:5302129 , RGD:13792537
NCBI chr 5:150,533,895...150,609,423
Ensembl chr 5:150,546,430...150,609,352
G
Radil
Rap associating with DIL domain
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr12:14,092,541...14,156,704
Ensembl chr12:14,092,541...14,156,704
G
Ret
ret proto-oncogene
acts_upstream_of_or_within
ISO
MGI:2449909 (MGI:3617928|PMID:15242795)
RGD
PMID:15242795
MGI:3617928
NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
G
Sema3a
semaphorin 3A
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
G
Sema3b
semaphorin 3B
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:116,353,791...116,362,655
Ensembl chr 8:116,354,073...116,361,343
G
Sema3c
semaphorin 3C
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:2150759 (MGI:2149435|PMID:11688556)
RGD
PMID:11688556 , PMID:21873635
MGI:2149435 , RGD:13792537
NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
G
Sema3d
semaphorin 3D
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:19,224,378...19,413,519
Ensembl chr 4:19,224,310...19,413,484
G
Sema3e
semaphorin 3E
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:17,314,745...17,594,659
Ensembl chr 4:17,272,511...17,594,598
G
Sema3f
semaphorin 3F
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:2670663 (MGI:3613099|PMID:16319111)
RGD
PMID:16319111 , PMID:21873635
MGI:3613099 , RGD:13792537
NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
G
Sema3g
semaphorin 3G
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:7,303,582...7,315,214
Ensembl chr16:7,303,578...7,315,390
G
Sema4a
semaphorin 4A
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:187,799,568...187,823,014
Ensembl chr 2:187,799,568...187,822,997
G
Sema4b
semaphorin 4B
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:141,986,145...142,014,400
Ensembl chr 1:141,986,145...142,014,398
G
Sema4c
semaphorin 4C
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:43,129,413...43,140,442
Ensembl chr 9:43,129,415...43,139,870
G
Sema4d
semaphorin 4D
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr17:13,516,276...13,538,513
Ensembl chr17:13,488,376...13,553,974
G
Sema4f
ssemaphorin 4F
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:113,738,225...113,764,532
Ensembl chr 4:113,738,226...113,764,532
G
Sema4g
semaphorin 4G
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:264,738,935...264,753,399
Ensembl chr 1:264,741,911...264,753,397
G
Sema5a
semaphorin 5A
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:85,377,318...85,808,970
Ensembl chr 2:85,377,318...85,808,970
G
Sema5b
semaphorin 5B
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr11:68,304,844...68,435,109
Ensembl chr11:68,306,659...68,349,238
G
Sema6a
semaphorin 6A
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr18:41,330,519...41,451,813
Ensembl chr18:41,333,551...41,389,510
G
Sema6b
semaphorin 6B
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:10,934,273...10,951,252
Ensembl chr 9:10,941,613...10,951,252
G
Sema6c
semaphorin 6C
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:196,330,777...196,347,218
Ensembl chr 2:196,334,626...196,344,008
G
Sema6d
semaphorin 6D
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:116,899,906...116,958,059
Ensembl chr 3:116,899,878...116,958,050
G
Sema7a
semaphorin 7A (John Milton Hagen blood group)
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:62,723,788...62,746,530
Ensembl chr 8:62,723,788...62,745,868
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO ISS
GO_REF:0000107 MGI:1857796 (MGI:3583396|PMID:15936751) GO_REF:0000024
Ensembl RGD UniProt
PMID:15936751
GO_REF:0000024 GO_REF:0000107 MGI:3583396
NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
G
Smo
smoothened, frizzled class receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:101791 (MGI:3640718|PMID:16687132)
Ensembl RGD
PMID:16687132
GO_REF:0000107 MGI:3640718
NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
G
Sox10
SRY-box transcription factor 10
involved_in
IBA ISO
PMID:21873635 (MGI:3527299|PMID:15572147)
RGD
PMID:15572147 , PMID:21873635
MGI:3527299 , RGD:13792537
NCBI chr 7:120,393,238...120,403,523
Ensembl chr 7:120,393,254...120,403,523
G
Sox8
SRY-box transcription factor 8
involved_in
ISS ISO
GO_REF:0000024 (MGI:3527299|PMID:15572147)
UniProt RGD
PMID:15572147
GO_REF:0000024 MGI:3527299
NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
G
Tbx1
T-box transcription factor 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2179190|MGI:2179191 (MGI:3530686|PMID:15652707), (MGI:4822099|PMID:20501333)
UniProt RGD
PMID:15652707 PMID:20501333
GO_REF:0000024 MGI:3530686 MGI:4822099
NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
G
Zeb2
zinc finger E-box binding homeobox 2
acts_upstream_of_or_within
ISO
MGI:2387501 (MGI:2450818|PMID:12522767)
RGD
PMID:12522767
MGI:2450818
NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
G
Fn1
fibronectin 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:26571399)
Ensembl RGD
PMID:26571399
GO_REF:0000107
NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
G
Nrp1
neuropilin 1
involved_in
ISO
(MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129)
RGD
PMID:18356247 PMID:19325129 PMID:19386662
MGI:3788968 MGI:3848580 MGI:5567908
NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
G
Nrp2
neuropilin 2
involved_in
ISO
(MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662)
RGD
PMID:18356247 PMID:19386662
MGI:3788968 MGI:3848580
NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
G
Phox2b
paired-like homeobox 2b
involved_in
ISO
(MGI:1337891|PMID:10360575)
RGD
PMID:10360575
MGI:1337891
NCBI chr14:42,711,169...42,718,707
Ensembl chr14:42,714,315...42,717,010
G
Sema3a
semaphorin 3A
involved_in
ISO
(MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129)
RGD
PMID:18356247 PMID:19325129 PMID:19386662
MGI:3788968 MGI:3848580 MGI:5567908
NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
G
Sema3f
semaphorin 3F
involved_in
ISO
(MGI:3848580|PMID:19386662)
RGD
PMID:19386662
MGI:3848580
NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
G
Folr1
folate receptor alpha
involved_in
ISO
(MGI:3721767|PMID:17286298)
RGD
PMID:17286298
MGI:3721767
NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
G
Sema3a
semaphorin 3A
involved_in
ISO
(MGI:5567908|PMID:19325129)
RGD
PMID:19325129
MGI:5567908
NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
G
Kbtbd8
kelch repeat and BTB domain containing 8
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:26399832)
UniProt Ensembl RGD
PMID:26399832
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:127,164,728...127,177,537
Ensembl chr 4:127,164,453...127,177,477
G
Klhl12
kelch-like family member 12
involved_in
ISO ISS IEA
(PMID:27716508) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:27716508
GO_REF:0000024 GO_REF:0000107
NCBI chr13:51,280,933...51,314,753
Ensembl chr13:51,282,684...51,314,797
G
Lrp6
LDL receptor related protein 6
involved_in
ISO IBA
(PMID:11029007) PMID:21873635
RGD
PMID:11029007 , PMID:21873635
RGD:13792537
NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
G
Nolc1
nucleolar and coiled-body phosphoprotein 1
involved_in
ISO ISS
(PMID:26399832) GO_REF:0000024
RGD UniProt
PMID:26399832
GO_REF:0000024
NCBI chr 1:265,829,055...265,839,819
Ensembl chr 1:265,829,108...265,839,818
G
Pdcd6
programmed cell death 6
involved_in
ISS ISO
GO_REF:0000024 (PMID:27716508)
UniProt RGD
PMID:27716508
GO_REF:0000024
NCBI chr 1:31,576,183...31,591,852
Ensembl chr 1:31,576,183...31,591,849
G
Pef1
penta-EF hand domain containing 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:27716508)
UniProt RGD
PMID:27716508
GO_REF:0000024
NCBI chr 5:148,320,610...148,343,876
Ensembl chr 5:148,320,438...148,343,886
G
Tcof1
treacle ribosome biogenesis factor 1
involved_in
ISO
(PMID:26399832)
RGD
PMID:26399832
NCBI chr18:56,081,863...56,115,719
Ensembl chr18:56,082,195...56,115,593
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Cited2
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
involved_in
ISO
(MGI:3054669|PMID:15475956)
RGD
PMID:15475956
MGI:3054669
NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
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Nodal
nodal growth differentiation factor
involved_in
ISO
(MGI:5315339|PMID:17507406)
RGD
PMID:17507406
MGI:5315339
NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
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Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
MGI:2158343|MGI:95522 (MGI:3702797|PMID:16943278)
RGD
PMID:16943278
MGI:3702797
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
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Dll3
delta like canonical Notch ligand 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857008 (MGI:3620337|PMID:15170697)
Ensembl RGD
PMID:15170697
GO_REF:0000107 MGI:3620337
NCBI chr 1:85,485,875...85,493,683
Ensembl chr 1:85,485,289...85,493,685
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Epb41l5
erythrocyte membrane protein band 4.1 like 5
acts_upstream_of_or_within
ISO
MGI:3578147 (MGI:3577662|PMID:15755804)
RGD
PMID:15755804
MGI:3577662
NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
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Fgfr1
Fibroblast growth factor receptor 1
acts_upstream_of_or_within
ISO
MGI:1338938 (MGI:3702797|PMID:16943278)
RGD
PMID:16943278
MGI:3702797
NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
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Nckap1
NCK-associated protein 1
acts_upstream_of_or_within
ISO
MGI:3578145 (MGI:3701029|PMID:16831833)
RGD
PMID:16831833
MGI:3701029
NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
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Nup133
nucleoporin 133
acts_upstream_of_or_within
ISO
MGI:3578539 (MGI:3577662|PMID:15755804)
RGD
PMID:15755804
MGI:3577662
NCBI chr19:56,681,965...56,731,404
Ensembl chr19:56,681,979...56,731,372
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Poglut1
protein O-glucosyltransferase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2137554 (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804)
Ensembl RGD
PMID:9636176 PMID:15755804
GO_REF:0000107 MGI:1267118 MGI:3577662
NCBI chr11:64,761,493...64,788,210
Ensembl chr11:64,761,146...64,788,208
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Tcf15
transcription factor 15
acts_upstream_of_or_within
ISO
MGI:1929775 (MGI:84545|PMID:8955271)
RGD
PMID:8955271
MGI:84545
NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
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Tead1
TEA domain transcription factor 1
acts_upstream_of_or_within
ISO
MGI:103262|MGI:104904 (MGI:3773640|PMID:18332127)
RGD
PMID:18332127
MGI:3773640
NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061
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Tead2
TEA domain transcription factor 2
acts_upstream_of_or_within
ISO
MGI:101876|MGI:103262 (MGI:3773640|PMID:18332127)
RGD
PMID:18332127
MGI:3773640
NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
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Yap1
Yes1 associated transcriptional regulator
acts_upstream_of_or_within
ISO
MGI:101876|MGI:104904 (MGI:3773640|PMID:18332127)
RGD
PMID:18332127
MGI:3773640
NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
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Exoc4
exocyst complex component 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4975171 (MGI:1195048|PMID:9441674)
Ensembl RGD
PMID:9441674
GO_REF:0000107 MGI:1195048
NCBI chr 4:60,549,128...61,358,305
Ensembl chr 4:60,549,197...61,355,994
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Foxc1
forkhead box C1
involved_in acts_upstream_of_or_within
ISO
(MGI:3047050|PMID:15196959) MGI:1347481 (MGI:2150572|PMID:11562355)
RGD
PMID:11562355 PMID:15196959
MGI:2150572 MGI:3047050
NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
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Foxc2
forkhead box C2
acts_upstream_of_or_within
ISO
MGI:1347466 (MGI:2150572|PMID:11562355)
RGD
PMID:11562355
MGI:2150572
NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
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Hnf1a
HNF1 homeobox A
acts_upstream_of_or_within
ISO
MGI:96770 (MGI:1334099|PMID:10090727)
RGD
PMID:10090727
MGI:1334099
NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
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Htt
huntingtin
acts_upstream_of_or_within
ISO
MGI:1857180 (MGI:3609520|PMID:16109169)
RGD
PMID:16109169
MGI:3609520
NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
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Lef1
lymphoid enhancer binding factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:98504 (MGI:1334099|PMID:10090727)
Ensembl RGD
PMID:10090727
GO_REF:0000107 MGI:1334099
NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
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Wnt11
Wnt family member 11
acts_upstream_of_or_within
ISO
MGI:98958 (MGI:5634837|PMID:25813538)
RGD
PMID:25813538
MGI:5634837
NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
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Wnt5a
Wnt family member 5A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:101948 (MGI:5634837|PMID:25813538)
Ensembl RGD
PMID:25813538
GO_REF:0000107 MGI:5634837
NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
G
Nckap1
NCK-associated protein 1
acts_upstream_of_or_within
ISO
MGI:3578145 (MGI:3701029|PMID:16831833)
RGD
PMID:16831833
MGI:3701029
NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
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Smad2
SMAD family member 2
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1857691 (MGI:3039049|PMID:15084457)
UniProt RGD
PMID:15084457
GO_REF:0000024 MGI:3039049
NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
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Smad3
SMAD family member 3
acts_upstream_of_or_within
ISO
MGI:1857696 (MGI:3039049|PMID:15084457)
RGD
PMID:15084457
MGI:3039049
NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
G
Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
MGI:2158343 (MGI:3702797|PMID:16943278)
RGD
PMID:16943278
MGI:3702797
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
G
Foxc2
forkhead box C2
acts_upstream_of_or_within
ISO
MGI:1857865 (MGI:86990|PMID:9106663)
RGD
PMID:9106663
MGI:86990
NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
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Wnt3a
Wnt family member 3A
acts_upstream_of_or_within
ISO
MGI:1857489 (MGI:86727|PMID:9126297)
RGD
PMID:9126297
MGI:86727
NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
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Gata5
GATA binding protein 5
involved_in
ISO
(MGI:5286818|PMID:21633169)
RGD
PMID:21633169
MGI:5286818
NCBI chr 3:175,701,278...175,709,465
Ensembl chr 3:175,701,280...175,709,465
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Jag1
jagged canonical Notch ligand 1
involved_in
IGI
PMID:20951801
BHF-UCL
PMID:20951801
RGD:13601997
NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
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Notch1
notch receptor 1
involved_in
IGI
PMID:20951801
BHF-UCL
PMID:20951801
RGD:13601997
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
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Bmp4
bone morphogenetic protein 4
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:P23359 (MGI:5502250|PMID:23863481)
Ensembl RGD
PMID:23863481
GO_REF:0000107 MGI:5502250
NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
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Bmp7
bone morphogenetic protein 7
involved_in
ISO
UniProtKB:P21275 (MGI:5502250|PMID:23863481)
RGD
PMID:23863481
MGI:5502250
NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
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Sema3c
semaphorin 3C
involved_in
ISO
(MGI:5693177|PMID:26053665)
RGD
PMID:26053665
MGI:5693177
NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
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Twist1
twist family bHLH transcription factor 1
involved_in
ISO
(MGI:4838344|PMID:20804746)
RGD
PMID:20804746
MGI:4838344
NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
G
Ager
advanced glycosylation end product-specific receptor
IMP
RGD
PMID:21743278
RGD:7243870
NCBI chr20:4,363,152...4,366,079
Ensembl chr20:4,363,152...4,366,079
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Alx1
ALX homeobox 1
involved_in
ISO ISS
(PMID:23288509) GO_REF:0000024
RGD UniProt
PMID:23288509
GO_REF:0000024
NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458
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Axin2
axin 2
involved_in
ISO IEA
(PMID:17072303) GO_REF:0000107
RGD Ensembl
PMID:17072303
GO_REF:0000107
NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
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Bambi
BMP and activin membrane-bound inhibitor
involved_in
ISO
(PMID:19328798)
RGD
PMID:19328798
NCBI chr17:56,905,419...56,909,675
Ensembl chr17:56,905,112...56,909,992
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Bcl9l
BCL9 like
involved_in
ISO
(PMID:19328798)
RGD
PMID:19328798
NCBI chr 8:48,805,684...48,835,794
Ensembl chr 8:48,805,684...48,834,312
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Bmp2
bone morphogenetic protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3583785 (MGI:3611958|PMID:16314491) (PMID:20890042)
Ensembl RGD
PMID:16314491 PMID:20890042
GO_REF:0000107 MGI:3611958
NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
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Bmp4
bone morphogenetic protein 4
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:P23359 (MGI:5502250|PMID:23863481)
Ensembl RGD
PMID:23863481
GO_REF:0000107 MGI:5502250
NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
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Bmp7
bone morphogenetic protein 7
involved_in
ISO
UniProtKB:P21275 (MGI:5502250|PMID:23863481)
RGD
PMID:23863481
MGI:5502250
NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
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Col1a1
collagen type I alpha 1 chain
involved_in
ISO
(PMID:20018240)
RGD
PMID:20018240
NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
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Crb2
crumbs cell polarity complex component 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5296388|PMID:22072575), (MGI:5823085|PMID:27870829)
UniProt RGD
PMID:22072575 PMID:27870829
GO_REF:0000024 MGI:5296388 MGI:5823085
NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
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Ctnnb1
catenin beta 1
involved_in
ISO
UniProtKB:Q9NX18 (PMID:23983127)
RGD
PMID:23983127
NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
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Dab2
DAB adaptor protein 2
involved_in
IEA ISO
GO_REF:0000107 (MGI:5442513|PMID:15734730)
Ensembl RGD
PMID:15734730
GO_REF:0000107 MGI:5442513
NCBI chr 2:55,747,353...55,768,848
Ensembl chr 2:55,747,318...55,768,270
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Ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
involved_in
ISO
(PMID:20154697)
RGD
PMID:20154697
NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011
G
Fermt2
FERM domain containing kindlin 2
involved_in
ISO
(PMID:24226523)
RGD
PMID:24226523
NCBI chr15:19,807,806...19,876,557
Ensembl chr15:19,807,808...19,876,408
G
Foxc1
forkhead box C1
involved_in
ISO
(PMID:22991501)
RGD
PMID:22991501
NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
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Gcnt2
glucosaminyl (N-acetyl) transferase 2 (I blood group)
involved_in
ISO
(PMID:21750175) (MGI:5545971|PMID:21750175)
RGD
PMID:21750175
MGI:5545971
NCBI chr17:21,634,546...21,677,477
Ensembl chr17:21,634,551...21,739,408
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Glipr2
GLI pathogenesis-related 2
involved_in
ISO
(PMID:23516513)
RGD
PMID:23516513
NCBI chr 5:59,415,415...59,446,732
Ensembl chr 5:59,416,076...59,446,647
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Hdac2
histone deacetylase 2
IMP
RGD
PMID:19553350
RGD:9590229
NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
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Il1b
interleukin 1 beta
involved_in
IEA ISO
GO_REF:0000107 (PMID:25204733)
Ensembl RGD
PMID:25204733
GO_REF:0000107
NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
G
Il6
interleukin 6
involved_in
ISO
(PMID:25916550)
RGD
PMID:25916550
NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
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Isl1
ISL LIM homeobox 1
involved_in
IMP
PMID:23270756
BHF-UCL
PMID:23270756
RGD:13210526
NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
G
Lef1
lymphoid enhancer binding factor 1
involved_in
ISO IEA
(PMID:20018240) GO_REF:0000107
RGD Ensembl
PMID:20018240
GO_REF:0000107
NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
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Loxl2
lysyl oxidase-like 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:24239292)
UniProt Ensembl RGD
PMID:24239292
GO_REF:0000024 GO_REF:0000107
NCBI chr15:51,276,022...51,365,238
Ensembl chr15:51,303,909...51,365,234
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Mdk
midkine
involved_in
ISO ISS
(PMID:18469519) GO_REF:0000024
RGD UniProt
PMID:18469519
GO_REF:0000024
NCBI chr 3:80,841,003...80,843,895
Ensembl chr 3:80,841,005...80,842,916
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Mtor
mechanistic target of rapamycin kinase
involved_in
ISO
(PMID:27919618)
RGD
PMID:27919618
NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
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Myocd
myocardin
involved_in
IMP
PMID:23270756
BHF-UCL
PMID:23270756
RGD:13210526
NCBI chr10:51,682,053...51,781,458
Ensembl chr10:51,683,540...51,778,986
G
Notch1
notch receptor 1
involved_in
ISO
(MGI:4837019|PMID:20890042)
RGD
PMID:20890042
MGI:4837019
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
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Olfm1
olfactomedin 1
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 3:6,761,031...6,798,739
Ensembl chr 3:6,773,813...6,798,737
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Pdpn
podoplanin
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (PMID:17046996), (PMID:21376833)
UniProt RGD
PMID:17046996 PMID:21376833 , PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 5:161,947,137...161,981,441
Ensembl chr 5:161,947,137...161,981,441
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Rgcc
regulator of cell cycle
involved_in
ISO
(PMID:19158077), (PMID:21307346)
RGD
PMID:19158077 PMID:21307346
NCBI chr15:61,551,861...61,564,695
Ensembl chr15:61,551,861...61,564,695
G
Sdcbp
syndecan binding protein
involved_in
ISO ISS
(PMID:25893292) GO_REF:0000024
RGD UniProt
PMID:25893292
GO_REF:0000024
NCBI chr 5:19,471,664...19,498,499
Ensembl chr 5:19,471,664...19,498,485
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Serpinb3
serpin family B member 3
involved_in
ISO
(PMID:20527027)
RGD
PMID:20527027
NCBI chr13:27,186,701...27,193,211
Ensembl chr13:27,187,130...27,192,592
G
Smad2
SMAD family member 2
involved_in
ISO
(MGI:2683382|PMID:14691138)
RGD
PMID:14691138
MGI:2683382
NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
G
Smad3
SMAD family member 3
involved_in
ISO
(PMID:18505915), (PMID:21307346)
RGD
PMID:18505915 PMID:21307346
NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
G
Smad4
SMAD family member 4
involved_in
IEA ISO
GO_REF:0000107 (MGI:2683382|PMID:14691138)
Ensembl RGD
PMID:14691138
GO_REF:0000107 MGI:2683382
NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
G
Snai1
snail family transcriptional repressor 1
involved_in
ISO
(PMID:20018240), (PMID:23288509) (MGI:4837019|PMID:20890042), (MGI:5548026|PMID:24239292)
RGD
PMID:20018240 PMID:20890042 PMID:23288509 PMID:24239292
MGI:4837019 MGI:5548026
NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
G
Tbx20
T-box transcription factor 20
involved_in
IEA ISO
GO_REF:0000107 (MGI:5299248|PMID:21983003)
Ensembl RGD
PMID:21983003
GO_REF:0000107 MGI:5299248
NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
G
Tgfb1
transforming growth factor, beta 1
involved_in acts_upstream_of_or_within
ISO ISS
(PMID:17999987), (PMID:18505915) (MGI:3821807|PMID:18794329) GO_REF:0000024
RGD UniProt
PMID:17999987 PMID:18505915 PMID:18794329
GO_REF:0000024 MGI:3821807
NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
G
Tgfb1i1
transforming growth factor beta 1 induced transcript 1
involved_in
ISO
(PMID:18762808)
RGD
PMID:18762808
NCBI chr 1:199,664,039...199,670,970
Ensembl chr 1:199,664,173...199,670,961
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:17999987), (PMID:18505915)
AgBase RGD
PMID:17999987 PMID:18505915
GO_REF:0000024
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
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Tgfb3
transforming growth factor, beta 3
involved_in
ISS ISO
GO_REF:0000024 (MGI:2683382|PMID:14691138) (PMID:18505915), (PMID:18718461)
AgBase RGD
PMID:14691138 PMID:18505915 PMID:18718461
GO_REF:0000024 MGI:2683382
NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
G
Tgfbr1
transforming growth factor, beta receptor 1
involved_in
ISO
UniProtKB:P10600 (MGI:3820811|PMID:18718461)
RGD
PMID:18718461
MGI:3820811
NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
G
Tgfbr2
transforming growth factor, beta receptor 2
involved_in
ISO
(PMID:26459119)
RGD
PMID:26459119
NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
G
Twist1
twist family bHLH transcription factor 1
involved_in
ISO
(PMID:18297062) (MGI:4838344|PMID:20804746), (MGI:5284765|PMID:18297062), (MGI:5284780|PMID:17332324)
RGD
PMID:17332324 PMID:18297062 PMID:20804746
MGI:4838344 MGI:5284765 MGI:5284780
NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
G
Wwtr1
WW domain containing transcription regulator 1
involved_in
ISO
(PMID:18227151)
RGD
PMID:18227151
NCBI chr 2:147,577,149...147,693,033
Ensembl chr 2:147,577,089...147,693,082
G
Zfp703
zinc finger protein 703
involved_in
ISO
(MGI:4940410|PMID:21317240)
RGD
PMID:21317240
MGI:4940410
NCBI chr16:69,237,857...69,242,028
Ensembl chr16:69,237,857...69,242,028
G
Acvr1
activin A receptor type 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:3610266|PMID:16140292)
Ensembl RGD
PMID:16140292
GO_REF:0000107 MGI:3610266
NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
G
Eng
endoglin
involved_in
ISO
(MGI:4368063|PMID:19703439)
RGD
PMID:19703439
MGI:4368063
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISO
(MGI:3830400|PMID:19161227)
RGD
PMID:19161227
MGI:3830400
NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
G
Tgfbr1
transforming growth factor, beta receptor 1
involved_in
ISO
(MGI:3820811|PMID:18718461)
RGD
PMID:18718461
MGI:3820811
NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
G
Tgfbr2
transforming growth factor, beta receptor 2
involved_in
ISO
(MGI:3801267|PMID:17050629)
RGD
PMID:17050629
MGI:3801267
NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
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Myc
MYC proto-oncogene, bHLH transcription factor
involved_in
ISS ISO
GO_REF:0000024 (MGI:3830398|PMID:19161241)
UniProt RGD
PMID:19161241
GO_REF:0000024 MGI:3830398
NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
G
Smad2
SMAD family member 2
involved_in
ISO
(PMID:17239842)
RGD
PMID:17239842
NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
G
Zic2
Zic family member 2
acts_upstream_of_or_within
ISO
MGI:1862004 (MGI:5584215|PMID:24585447)
RGD
PMID:24585447
MGI:5584215
NCBI chr15:108,908,366...108,913,812
Ensembl chr15:108,908,607...108,912,737
G
Shh
sonic hedgehog signaling molecule
involved_in
IEA ISO
GO_REF:0000107 (PMID:10654605)
Ensembl RGD
PMID:10654605
GO_REF:0000107
NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
G
Nkx2-5
NK2 homeobox 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2654594 (MGI:3815254|PMID:18722343)
Ensembl RGD
PMID:18722343
GO_REF:0000107 MGI:3815254
NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
G
Tgfbr1
transforming growth factor, beta receptor 1
NOT|involved_in
ISO
(MGI:3820811|PMID:18718461)
RGD
PMID:18718461
MGI:3820811
NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
G
Zfp36l1
zinc finger protein 36, C3H type-like 1
acts_upstream_of_or_within
ISO
MGI:3050540 (MGI:3047495|PMID:15226444)
RGD
PMID:15226444
MGI:3047495
NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
G
Eng
endoglin
NOT|involved_in
ISO
(MGI:3721185|PMID:17628518)
RGD
PMID:17628518
MGI:3721185
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
G
Clasp1
cytoplasmic linker associated protein 1
involved_in
ISO
(PMID:23940118)
RGD
PMID:23940118
NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
G
Clasp2
cytoplasmic linker associated protein 2
involved_in
ISO IEA
(PMID:23940118) GO_REF:0000107
RGD Ensembl
PMID:23940118
GO_REF:0000107
NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
G
Dag1
dystroglycan 1
involved_in
ISO
(PMID:23940118)
RGD
PMID:23940118
NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
G
Ell3
elongation factor for RNA polymerase II 3
involved_in
ISS ISO
GO_REF:0000024 (MGI:5438719|PMID:22768269)
UniProt RGD
PMID:22768269
GO_REF:0000024 MGI:5438719
NCBI chr 3:113,400,395...113,405,869
Ensembl chr 3:113,401,734...113,405,829
G
Epha3
Eph receptor A3
involved_in
ISS ISO
GO_REF:0000024 (MGI:3703403|PMID:17046737)
UniProt RGD
PMID:17046737
GO_REF:0000024 MGI:3703403
NCBI chr11:421,253...783,037
Ensembl chr11:421,135...782,954
G
Grem1
gremlin 1, DAN family BMP antagonist
involved_in
ISO
(PMID:16816361)
RGD
PMID:16816361
NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
G
LOC103690035
TGF-beta receptor type-1-like
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 5:64,565,358...64,585,219
Ensembl chr 5:64,566,804...64,584,309
G
Mcrip1
MAPK regulated co-repressor interacting protein 1
involved_in
ISO ISS
(PMID:25728771) GO_REF:0000024
RGD UniProt
PMID:25728771
GO_REF:0000024
NCBI chr10:109,720,144...109,727,595
Ensembl chr10:109,720,144...109,722,195
G
Phldb1
pleckstrin homology-like domain, family B, member 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:23940118)
Ensembl RGD
PMID:23940118
GO_REF:0000107
NCBI chr 8:48,997,189...49,045,176
Ensembl chr 8:48,997,184...49,045,154
G
Phldb2
pleckstrin homology-like domain, family B, member 2
involved_in
ISO
(PMID:23940118)
RGD
PMID:23940118
NCBI chr11:60,042,879...60,051,229
Ensembl chr11:57,265,732...57,481,589
G
Pofut2
protein O-fucosyltransferase 2
acts_upstream_of_or_within
ISO
MGI:3604508|MGI:4127173 (MGI:4838381|PMID:20637190)
RGD
PMID:20637190
MGI:4838381
NCBI chr20:12,117,811...12,128,747
Ensembl chr20:12,117,811...12,128,747
G
Smad7
SMAD family member 7
involved_in
ISO IEA
(PMID:24887517) GO_REF:0000107
RGD Ensembl
PMID:24887517
GO_REF:0000107
NCBI chr18:71,395,830...71,424,164
Ensembl chr18:71,395,830...71,424,157
G
Tgfbr1
transforming growth factor, beta receptor 1
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
G
Tiam1
TIAM Rac1 associated GEF 1
involved_in
ISO
(PMID:20826792)
RGD
PMID:20826792
NCBI chr11:29,931,083...30,061,173
Ensembl chr11:29,933,163...30,051,103
G
Tgfb1
transforming growth factor, beta 1
NOT|involved_in
ISO
(MGI:3830400|PMID:19161227)
RGD
PMID:19161227
MGI:3830400
NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
G
Tgfb3
transforming growth factor, beta 3
NOT|involved_in
ISO
(MGI:3830400|PMID:19161227)
RGD
PMID:19161227
MGI:3830400
NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
G
Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
MGI:95522 (MGI:3702797|PMID:16943278)
RGD
PMID:16943278
MGI:3702797
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
G
Fgfr1
Fibroblast growth factor receptor 1
acts_upstream_of_or_within
ISO
MGI:1338938 (MGI:3702797|PMID:16943278)
RGD
PMID:16943278
MGI:3702797
NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
G
Bmpr1a
bone morphogenetic protein receptor type 1A
NOT|involved_in
ISO
(MGI:3040576|PMID:15073157)
RGD
PMID:15073157
MGI:3040576
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
G
Bmpr1a
bone morphogenetic protein receptor type 1A
NOT|involved_in
ISO
(MGI:3040576|PMID:15073157)
RGD
PMID:15073157
MGI:3040576
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
G
Meox1
mesenchyme homeobox 1
involved_in
ISO
(MGI:3038036|PMID:15024065), (MGI:4360150|PMID:19520072)
RGD
PMID:15024065 PMID:19520072
MGI:3038036 MGI:4360150
NCBI chr10:89,797,011...89,817,009
Ensembl chr10:89,797,038...89,816,491
G
Pax1
paired box 1
acts_upstream_of_or_within
ISO
(PMID:7743923)
RGD
PMID:7743923
NCBI chr 3:141,577,124...141,589,849
Ensembl chr 3:141,577,504...141,589,849
G
Scx
scleraxis bHLH transcription factor
acts_upstream_of_or_within
ISO
(PMID:7743923)
RGD
PMID:7743923
NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
G
Sfrp2
secreted frizzled-related protein 2
acts_upstream_of_or_within
ISO
(PMID:10654605)
RGD
PMID:10654605
NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
G
Tgfbr2
transforming growth factor, beta receptor 2
NOT|involved_in
ISO
(MGI:3801267|PMID:17050629)
RGD
PMID:17050629
MGI:3801267
NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
G
Nrp1
neuropilin 1
involved_in
ISO
(MGI:3848580|PMID:19386662)
RGD
PMID:19386662
MGI:3848580
NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
G
Nrp2
neuropilin 2
involved_in
ISO
(MGI:3848580|PMID:19386662)
RGD
PMID:19386662
MGI:3848580
NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
G
Sema3a
semaphorin 3A
involved_in
ISO
(MGI:3848580|PMID:19386662)
RGD
PMID:19386662
MGI:3848580
NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
G
Sema3f
semaphorin 3F
involved_in
ISO
(MGI:3848580|PMID:19386662)
RGD
PMID:19386662
MGI:3848580
NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
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