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ONTOLOGY REPORT - ANNOTATIONS

Term:trachea morphogenesis
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Accession:GO:0060439 term browser browse the term
Definition:The process in which a trachea is generated and organized. The trachea is the portion of the airway that attaches to the bronchi as it branches.


show annotations for term's descendants           Sort by:
trachea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148567 (PMID:18231602), (PMID:18692041)
GO_REF:0000107 		RGD
Ensembl		 PMID:18231602 PMID:18692041 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (PMID:15295088), (PMID:9441679) RGD PMID:9441679 PMID:15295088 NCBI chr 4:82,632,958...82,636,851
Ensembl chr 4:82,632,306...82,639,038 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1857796 (PMID:9731532)
GO_REF:0000107 		RGD
Ensembl		 PMID:9731532 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:2384513 (PMID:18990706)
GO_REF:0000107 		RGD
Ensembl		 PMID:18990706 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:124,674,986...124,761,469 		JBrowse link
trachea cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (PMID:9441679) RGD PMID:9441679 NCBI chr 4:82,632,958...82,636,851
Ensembl chr 4:82,632,306...82,639,038 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1922667 (PMID:18256198) RGD PMID:18256198 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:169,000,968...169,131,716 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:18256198)
GO_REF:0000107 		RGD
Ensembl		 PMID:18256198 GO_REF:0000107 NCBI chr 7:75,987,217...76,123,984
Ensembl chr 7:75,987,817...76,123,654 		JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO MGI:3793280 (PMID:18367557) RGD PMID:18367557 NCBI chr 7:118,514,684...118,559,316
Ensembl chr 7:118,514,684...118,559,316 		JBrowse link
trachea formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:3797048 (PMID:18692041)
GO_REF:0000107 		RGD
Ensembl		 PMID:18692041 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148569 (PMID:19805295)
GO_REF:0000107 		RGD
Ensembl		 PMID:19805295 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1346867 (PMID:25100655)
GO_REF:0000107 		RGD
Ensembl		 PMID:25100655 GO_REF:0000107 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:73,578,752...73,650,184 		JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 acts_upstream_of_or_within ISO
IEA 		MGI:1346866 (PMID:25100655)
GO_REF:0000107 		RGD
Ensembl		 PMID:25100655 GO_REF:0000107 NCBI chr 7:9,241,449...9,264,216
Ensembl chr 7:9,241,310...9,260,940 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1346859 (PMID:25100655)
GO_REF:0000107 		RGD
Ensembl		 PMID:25100655 GO_REF:0000107 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:97,462,025...97,527,825 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:25100655) RGD PMID:25100655 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:2384513 (PMID:18990706)
GO_REF:0000107 		RGD
Ensembl		 PMID:18990706 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:124,674,986...124,761,469 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    developmental process 7294
      anatomical structure morphogenesis 3073
        animal organ morphogenesis 1183
          trachea morphogenesis 12
            trachea cartilage morphogenesis 4
            trachea formation 7
Path 2
Term Annotations click to browse term
  biological_process 20668
    developmental process 7294
      anatomical structure development 6777
        multicellular organism development 5422
          system development 4701
            respiratory system development 322
              trachea development 22
                trachea morphogenesis 12
                  trachea cartilage morphogenesis 4
                  trachea formation 7
paths to the root