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ONTOLOGY REPORT - ANNOTATIONS


Term:heart trabecula formation
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Accession:GO:0060347 term browser browse the term
Definition:The process of creating a trabecula in the heart. A trabecula is a tissue element in the form of a small beam, strut or rod.
Synonyms:exact_synonym: cardiac trabecula formation;   cardiac trabeculation;   heart trabeculation
 related_synonym: heart trabecula biogenesis



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heart trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3609982 (MGI:3776329|PMID:18267097)
Ensembl
RGD
PMID:18267097 GO_REF:0000107 MGI:3776329 NCBI chr11:24,932,227...24,941,068
Ensembl chr11:24,931,761...24,941,103
JBrowse link
G Adgrg6 adhesion G protein-coupled receptor G6 involved_in IBA
ISO
PMID:21873635
(MGI:5516409|PMID:24082093)
RGD PMID:24082093 PMID:21873635 MGI:5516409, RGD:13792537 NCBI chr 1:8,812,889...8,954,239
Ensembl chr 1:8,812,904...8,954,123
JBrowse link
G Bmp10 bone morphogenetic protein 10 involved_in IEA
ISO
GO_REF:0000107
(MGI:3040529|PMID:15073151)
Ensembl
RGD
PMID:15073151 GO_REF:0000107 MGI:3040529 NCBI chr 4:119,872,066...119,877,694
Ensembl chr 4:119,872,045...119,878,627
JBrowse link
G Cav3 caveolin 3 acts_upstream_of_or_within ISO MGI:2684578 (MGI:3849772|PMID:19535499) RGD PMID:19535499 MGI:3849772 NCBI chr 4:145,582,168...145,598,142
Ensembl chr 4:145,582,060...145,598,137
JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 acts_upstream_of_or_within ISO MGI:3690045 (MGI:3689683|PMID:16966370) RGD PMID:16966370 MGI:3689683 NCBI chr19:52,867,914...52,907,169 JBrowse link
G Fhl2 four and a half LIM domains 2 acts_upstream_of_or_within ISO (PMID:15509787) RGD PMID:15509787 NCBI chr 9:45,388,979...45,462,530
Ensembl chr 9:45,388,981...45,431,192
JBrowse link
G Fkbp1a FKBP prolyl isomerase 1A involved_in ISO (MGI:1195585|PMID:9461216) RGD PMID:9461216 MGI:1195585 NCBI chr 3:140,040,359...140,060,107
Ensembl chr 3:140,040,278...140,060,743
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 involved_in ISO (MGI:3703467|PMID:17259303) RGD PMID:17259303 MGI:3703467 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3773736|PMID:16510504)
Ensembl
RGD
PMID:16510504 GO_REF:0000107 MGI:3773736 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO MGI:3777011 (MGI:3776202|PMID:17573777) RGD PMID:17573777 MGI:3776202 NCBI chr 3:131,677,388...131,707,844
Ensembl chr 3:131,677,391...131,708,359
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (MGI:2655947|PMID:12663486) RGD PMID:12663486 MGI:2655947 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:109249 (MGI:3776329|PMID:18267097) RGD PMID:18267097 MGI:3776329 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206|MGI:3522214 (MGI:3513738|PMID:15569937) RGD PMID:15569937 MGI:3513738 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Tek TEK receptor tyrosine kinase involved_in ISO (MGI:68132|PMID:7958865) RGD PMID:7958865 MGI:68132 NCBI chr 5:109,607,077...109,733,805
Ensembl chr 5:109,607,077...109,733,804
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO (MGI:2663364|PMID:12773577) RGD PMID:12773577 MGI:2663364 NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19504
    developmental process 6778
      anatomical structure morphogenesis 2892
        cardiac chamber morphogenesis 148
          heart trabecula formation 15
Path 2
Term Annotations click to browse term
  biological_process 19504
    developmental process 6778
      anatomical structure development 6203
        multicellular organism development 5642
          system development 5310
            animal organ development 4069
              heart development 697
                heart morphogenesis 286
                  cardiac chamber morphogenesis 148
                    heart trabecula formation 15
paths to the root