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ONTOLOGY REPORT - ANNOTATIONS

Term:bone trabecula formation
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Accession:GO:0060346 term browser browse the term
Definition:The process of creating a trabecula in the bone. A trabecula is a tissue element in the form of a small beam, strut or rod.
Synonyms:exact_synonym: bone trabeculation;   skeletal trabecula formation;   skeletal trabeculation
 related_synonym: bone trabecula biogenesis;   skeletal trabecula biogenesis

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bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3710444|PMID:17440987) MGI
Ensembl		 PMID:17440987 GO_REF:0000107 MGI:3710444 NCBI chrNW_004936490:11,448,552...11,465,836
Ensembl chrNW_004936490:11,448,654...11,464,444 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (MGI:5661140|PMID:22359666) MGI PMID:22359666 MGI:5661140 NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Fbn2 fibrillin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:1,535,629...1,757,386
Ensembl chrNW_004936504:1,535,624...1,757,435 		JBrowse link
G Mmp2 matrix metallopeptidase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3710444|PMID:17440987) MGI
Ensembl		 PMID:17440987 GO_REF:0000107 MGI:3710444 NCBI chrNW_004936475:7,801,356...7,825,831
Ensembl chrNW_004936475:7,801,277...7,825,851 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1355063|PMID:10742104) MGI
Ensembl		 PMID:10742104 GO_REF:0000107 MGI:1355063 NCBI chrNW_004936609:1,216,436...1,221,528
Ensembl chrNW_004936609:1,216,436...1,221,561 		JBrowse link
G Ppargc1b PPARG coactivator 1 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:5,099,334...5,198,279
Ensembl chrNW_004936504:5,099,470...5,198,584 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3040721|PMID:14976225) MGI
Ensembl		 PMID:14976225 GO_REF:0000107 MGI:3040721 NCBI chrNW_004936785:1,276,478...1,320,397
Ensembl chrNW_004936785:1,276,420...1,321,017 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3581317|PMID:15964815) MGI
Ensembl		 PMID:15964815 GO_REF:0000107 MGI:3581317 NCBI chrNW_004936580:4,699,255...4,709,200
Ensembl chrNW_004936580:4,698,623...4,709,200 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (MGI:5461755|PMID:22886301) MGI PMID:22886301 MGI:5461755 NCBI chrNW_004936476:16,245,134...16,261,180
Ensembl chrNW_004936476:16,247,100...16,260,673 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3574150|PMID:15728361) MGI
Ensembl		 PMID:15728361 GO_REF:0000107 MGI:3574150 NCBI chrNW_004936512:6,768,240...6,774,172
Ensembl chrNW_004936512:6,768,240...6,774,172 		JBrowse link
negative regulation of bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chad chondroadherin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5525032|PMID:23755099) MGI
Ensembl		 PMID:23755099 GO_REF:0000107 MGI:5525032 NCBI chrNW_004936490:11,240,487...11,244,422
Ensembl chrNW_004936490:11,240,419...11,245,935 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726
Ensembl chrNW_004936673:1,395,757...1,396,311 		JBrowse link
G LOC101978323 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial ISO RGD PMID:32231239 RGD:32716373 NCBI chrNW_004936646:1,899,686...1,904,104
Ensembl chrNW_004936646:1,900,259...1,904,104 		JBrowse link
G Vdr vitamin D receptor ISO RGD PMID:32231239 RGD:32716373 NCBI chrNW_004936512:5,741,836...5,800,999
Ensembl chrNW_004936512:5,740,748...5,801,109 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15090
    developmental process 6018
      anatomical structure formation involved in morphogenesis 1190
        trabecula formation 30
          bone trabecula formation 14
            negative regulation of bone trabecula formation 4
            positive regulation of bone trabecula formation 0
            regulation of bone trabecula formation + 4
Path 2
Term Annotations click to browse term
  biological_process 15090
    developmental process 6018
      anatomical structure development 5682
        multicellular organism development 4640
          system development 4012
            skeletal system development 532
              skeletal system morphogenesis 252
                bone trabecula formation 14
                  negative regulation of bone trabecula formation 4
                  positive regulation of bone trabecula formation 0
                  regulation of bone trabecula formation + 4
paths to the root