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ONTOLOGY REPORT - ANNOTATIONS

Term:bone trabecula formation
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Accession:GO:0060346 term browser browse the term
Definition:The process of creating a trabecula in the bone. A trabecula is a tissue element in the form of a small beam, strut or rod.
Synonyms:exact_synonym: bone trabeculation;   skeletal trabecula formation;   skeletal trabeculation
 related_synonym: bone trabecula biogenesis;   skeletal trabecula biogenesis


show annotations for term's descendants           Sort by:
bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A1 collagen type I alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3710444|PMID:17440987) MGI
Ensembl		 PMID:17440987 GO_REF:0000107 MGI:3710444 NCBI chr17:50,184,101...50,201,631
Ensembl chr17:50,184,101...50,201,632 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (MGI:5661140|PMID:22359666) MGI PMID:22359666 MGI:5661140 NCBI chr 6:131,808,020...131,895,155
Ensembl chr 6:131,808,016...131,895,155 		JBrowse link
G FBN2 fibrillin 2 involved_in ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:128,257,909...128,538,245
Ensembl chr 5:128,257,909...128,659,185 		JBrowse link
G MMP2 matrix metallopeptidase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3710444|PMID:17440987) MGI
Ensembl		 PMID:17440987 GO_REF:0000107 MGI:3710444 NCBI chr16:55,478,830...55,506,691
Ensembl chr16:55,389,700...55,506,691 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1355063|PMID:10742104) MGI
Ensembl		 PMID:10742104 GO_REF:0000107 MGI:1355063 NCBI chr 5:174,724,582...174,730,896
Ensembl chr 5:174,724,582...174,730,896 		JBrowse link
G PPARGC1B PPARG coactivator 1 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:149,730,310...149,857,959
Ensembl chr 5:149,730,298...149,855,022 		JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3040721|PMID:14976225) MGI
Ensembl		 PMID:14976225 GO_REF:0000107 MGI:3040721 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473 		JBrowse link
G THBS3 thrombospondin 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3581317|PMID:15964815) MGI
Ensembl		 PMID:15964815 GO_REF:0000107 MGI:3581317 NCBI chr 1:155,195,588...155,209,178
Ensembl chr 1:155,195,588...155,209,051 		JBrowse link
G VEGFA vascular endothelial growth factor A acts_upstream_of_or_within ISO (MGI:5461755|PMID:22886301) MGI PMID:22886301 MGI:5461755 NCBI chr 6:43,770,211...43,786,487
Ensembl chr 6:43,770,184...43,786,487 		JBrowse link
G WNT10B Wnt family member 10B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3574150|PMID:15728361) MGI
Ensembl		 PMID:15728361 GO_REF:0000107 MGI:3574150 NCBI chr12:48,965,340...48,971,735
Ensembl chr12:48,965,340...48,971,735 		JBrowse link
negative regulation of bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHAD chondroadherin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5525032|PMID:23755099) MGI
Ensembl		 PMID:23755099 GO_REF:0000107 MGI:5525032 NCBI chr17:50,464,496...50,468,880
Ensembl chr17:50,464,496...50,468,906 		JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 ISO RGD PMID:32231239 RGD:32716373 NCBI chr12:57,762,334...57,767,078
Ensembl chr12:57,762,334...57,768,986 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IMP (PMID:15539560) BHF-UCL PMID:15539560 NCBI chr15:32,718,004...32,745,106
Ensembl chr15:32,718,004...32,745,106 		JBrowse link
G VDR vitamin D receptor ISO RGD PMID:32231239 RGD:32716373 NCBI chr12:47,841,537...47,904,994
Ensembl chr12:47,841,537...47,943,048 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19565
    developmental process 7513
      anatomical structure formation involved in morphogenesis 1459
        trabecula formation 31
          bone trabecula formation 14
            negative regulation of bone trabecula formation 4
            positive regulation of bone trabecula formation 0
            regulation of bone trabecula formation + 4
Path 2
Term Annotations click to browse term
  biological_process 19565
    developmental process 7513
      anatomical structure development 6925
        multicellular organism development 5540
          system development 4818
            skeletal system development 620
              skeletal system morphogenesis 275
                bone trabecula formation 14
                  negative regulation of bone trabecula formation 4
                  positive regulation of bone trabecula formation 0
                  regulation of bone trabecula formation + 4
paths to the root