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ONTOLOGY REPORT - ANNOTATIONS

Term:bone trabecula formation
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Accession:GO:0060346 term browser browse the term
Definition:The process of creating a trabecula in the bone. A trabecula is a tissue element in the form of a small beam, strut or rod.
Synonyms:exact_synonym: bone trabeculation;   skeletal trabecula formation;   skeletal trabeculation
 related_synonym: bone trabecula biogenesis;   skeletal trabecula biogenesis

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bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO (MGI:3710444|PMID:17440987) MGI PMID:17440987 MGI:3710444 NCBI chrNW_004955451:11,468,156...11,484,410
Ensembl chrNW_004955451:11,468,290...11,483,073 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (MGI:5661140|PMID:22359666) MGI PMID:22359666 MGI:5661140 NCBI chrNW_004955436:12,416,147...12,477,214
Ensembl chrNW_004955436:12,415,737...12,480,359 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (MGI:4836762|PMID:20855508) BHF-UCL PMID:20855508 MGI:4836762 NCBI chrNW_004955415:1,307,553...1,535,435
Ensembl chrNW_004955415:1,309,077...1,537,052 		JBrowse link
G Mmp2 matrix metallopeptidase 2 acts_upstream_of_or_within ISO (MGI:3710444|PMID:17440987) MGI PMID:17440987 MGI:3710444 NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:1355063|PMID:10742104) MGI PMID:10742104 MGI:1355063 NCBI chrNW_004955408:27,323,405...27,329,484
Ensembl chrNW_004955408:27,323,360...27,329,755 		JBrowse link
G Ppargc1b PPARG coactivator 1 beta involved_in ISO (MGI:3838421|PMID:19252502) DFLAT PMID:19252502 MGI:3838421 NCBI chrNW_004955415:4,638,057...4,756,885
Ensembl chrNW_004955415:4,644,998...4,757,093 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3040721|PMID:14976225) MGI PMID:14976225 MGI:3040721 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO (MGI:3581317|PMID:15964815) MGI PMID:15964815 MGI:3581317 NCBI chrNW_004955545:1,664,372...1,675,810
Ensembl chrNW_004955545:1,664,372...1,675,810 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (MGI:5461755|PMID:22886301) MGI PMID:22886301 MGI:5461755 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO (MGI:3574150|PMID:15728361) MGI PMID:15728361 MGI:3574150 NCBI chrNW_004955500:7,782,782...7,800,281
Ensembl chrNW_004955500:7,782,782...7,788,309 		JBrowse link
negative regulation of bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chad chondroadherin acts_upstream_of_or_within ISO (MGI:5525032|PMID:23755099) MGI PMID:23755099 MGI:5525032 NCBI chrNW_004955451:11,285,822...11,289,644
Ensembl chrNW_004955451:11,285,822...11,289,644 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) BHF-UCL PMID:15539560 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271 		JBrowse link
G LOC102011841 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial ISO RGD PMID:32231239 RGD:32716373 NCBI chrNW_004955458:5,472,404...5,477,001
Ensembl chrNW_004955458:5,472,404...5,477,001 		JBrowse link
G Vdr vitamin D receptor ISO RGD PMID:32231239 RGD:32716373 NCBI chrNW_004955500:6,745,725...6,798,052
Ensembl chrNW_004955500:6,745,678...6,798,048 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12228
    developmental process 5792
      anatomical structure formation involved in morphogenesis 1146
        trabecula formation 30
          bone trabecula formation 14
            negative regulation of bone trabecula formation 4
            positive regulation of bone trabecula formation 0
            regulation of bone trabecula formation + 4
Path 2
Term Annotations click to browse term
  biological_process 12228
    developmental process 5792
      anatomical structure development 5478
        multicellular organism development 4498
          system development 3901
            skeletal system development 531
              skeletal system morphogenesis 250
                bone trabecula formation 14
                  negative regulation of bone trabecula formation 4
                  positive regulation of bone trabecula formation 0
                  regulation of bone trabecula formation + 4
paths to the root