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ONTOLOGY REPORT - ANNOTATIONS


Term:face development
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Accession:GO:0060324 term browser browse the term
Definition:The biological process whose specific outcome is the progression of a face from an initial condition to its mature state. The face is the ventral division of the head.


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face development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1857891|MGI:1861722 (MGI:3700411|PMID:17184764) RGD PMID:17184764 MGI:3700411 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:107928 (MGI:3700411|PMID:17184764)
Ensembl
RGD
PMID:17184764 GO_REF:0000107 MGI:3700411 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3055492 (MGI:3789436|PMID:18443298) RGD PMID:18443298 MGI:3789436 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO MGI:97847 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 4:67,389,331...67,520,549
Ensembl chr 4:67,396,192...67,520,356
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO (PMID:15300250) RGD PMID:15300250 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO MGI:4942413 (MGI:4943100|PMID:21377456) RGD PMID:21377456 MGI:4943100 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Hoxb3 homeo box B3 acts_upstream_of_or_within ISO (MGI:4949985|PMID:21320481) RGD PMID:21320481 MGI:4949985 NCBI chr10:84,170,629...84,196,823
Ensembl chr10:84,182,118...84,195,796
JBrowse link
G Itga4 integrin subunit alpha 4 acts_upstream_of_or_within ISO MGI:1857206 (MGI:70927|PMID:7539359) RGD PMID:7539359 MGI:70927 NCBI chr 3:66,178,745...66,265,547
Ensembl chr 3:66,193,059...66,263,960
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346867 (MGI:3832113|PMID:18952847)
Ensembl
RGD
PMID:18952847 GO_REF:0000107 MGI:3832113 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 acts_upstream_of_or_within ISO MGI:1346866 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 7:11,458,971...11,478,520
Ensembl chr 7:11,458,967...11,478,489
JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO MGI:1346859 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3608879 (MGI:3789436|PMID:18443298) RGD PMID:18443298 MGI:3789436 NCBI chr 3:129,866,542...129,885,213
Ensembl chr 3:129,866,545...129,884,810
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO MGI:88190 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 4:147,532,040...147,592,769
Ensembl chr 4:147,532,042...147,592,699
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97856 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Sox3 SRY-box transcription factor 3 involved_in ISO (MGI:3765357|PMID:17728342) RGD PMID:17728342 MGI:3765357 NCBI chr  X:144,035,162...144,037,364
Ensembl chr  X:144,035,883...144,037,294
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO
IEA
(PMID:19918918)
GO_REF:0000107
RGD
Ensembl
PMID:19918918 GO_REF:0000107 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zfand5 zinc finger AN1-type containing 5 acts_upstream_of_or_within ISO MGI:3526860 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 1:238,842,506...238,854,030
Ensembl chr 1:238,843,338...238,852,566
JBrowse link
face morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd11 ankyrin repeat domain 11 acts_upstream_of_or_within ISO (PMID:21782149) RGD PMID:21782149 NCBI chr19:55,703,831...55,862,446
Ensembl chr19:55,703,824...55,737,500
JBrowse link
G Arid5b AT-rich interaction domain 5B acts_upstream_of_or_within ISO MGI:3526852 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr20:21,713,900...21,881,193
Ensembl chr20:21,564,975...21,880,715
JBrowse link
G Asph aspartate-beta-hydroxylase acts_upstream_of_or_within ISO MGI:2179287 (MGI:2177999|PMID:11773073) RGD PMID:11773073 MGI:2177999 NCBI chr 5:22,577,680...22,799,333
Ensembl chr 5:22,577,675...22,799,349
JBrowse link
G Cdk2ap1 cyclin-dependent kinase 2 associated protein 1 acts_upstream_of_or_within ISO MGI:3512185 (MGI:3837115|PMID:19229340) RGD PMID:19229340 MGI:3837115 NCBI chr12:37,668,369...37,677,067
Ensembl chr12:37,668,369...37,677,063
JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO MGI:97009 (MGI:3710444|PMID:17440987) RGD PMID:17440987 MGI:3710444 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Crebbp CREB binding protein involved_in ISO (MGI:4421646|PMID:19822209) RGD PMID:19822209 MGI:4421646 NCBI chr10:11,590,994...11,721,039
Ensembl chr10:11,595,044...11,721,039
JBrowse link
G Crispld1 cysteine-rich secretory protein LCCL domain containing 1 involved_in ISO (PMID:21254358) RGD PMID:21254358 NCBI chr 5:663,750...711,033
Ensembl chr 5:670,754...711,033
JBrowse link
G Crispld2 cysteine-rich secretory protein LCCL domain containing 2 involved_in ISO (PMID:21254358) RGD PMID:21254358 NCBI chr19:52,647,038...52,705,118
Ensembl chr19:52,647,070...52,705,131
JBrowse link
G Csrnp1 cysteine and serine rich nuclear protein 1 acts_upstream_of_or_within ISO MGI:3526868 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 8:128,659,883...128,673,339
Ensembl chr 8:128,659,868...128,672,284
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3722225|PMID:17699607) RGD PMID:17699607 MGI:3722225 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Dlx5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180474 (MGI:3611627|PMID:16330189)
Ensembl
RGD
PMID:16330189 GO_REF:0000107 MGI:3611627 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (MGI:4421646|PMID:19822209) RGD PMID:19822209 MGI:4421646 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Kat6a lysine acetyltransferase 6A acts_upstream_of_or_within ISO MGI:4418468|MGI:98493 (MGI:5442217|PMID:22921202) RGD PMID:22921202 MGI:5442217 NCBI chr16:73,942,669...74,020,750
Ensembl chr16:73,943,455...74,023,005
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1202879 (MGI:3722225|PMID:17699607)
Ensembl
RGD
PMID:17699607 GO_REF:0000107 MGI:3722225 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2156191|MGI:4415718 (MGI:4358010|PMID:19700620), (MGI:4413396|PMID:19653321)
RGD PMID:19653321 PMID:19700620, PMID:21873635 MGI:4358010 MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:88467 (MGI:3710444|PMID:17440987)
Ensembl
RGD
PMID:17440987 GO_REF:0000107 MGI:3710444 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Msx1 msh homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:10742093), (PMID:11332647), (PMID:12651933)
(MGI:3688967|PMID:11369996)
MGI:1933766|MGI:97493 (MGI:3611627|PMID:16330189), (MGI:4453942|PMID:20123092)
RGD PMID:10742093 PMID:11332647 PMID:11369996 PMID:12651933 PMID:16330189 PMID:20123092 MGI:3611627 MGI:3688967 MGI:4453942 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:15146186), (PMID:19242925) RGD PMID:15146186 PMID:19242925 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1862000 (MGI:3640733|PMID:16712836)
Ensembl
RGD
PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Pax9 paired box 9 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97168 (MGI:4453942|PMID:20123092)
Ensembl
RGD
PMID:20123092 GO_REF:0000107 MGI:4453942 NCBI chr 6:77,607,705...77,624,453
Ensembl chr 6:77,608,624...77,621,719
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1926728 (MGI:3696608|PMID:17143286)
Ensembl
RGD
PMID:17143286 GO_REF:0000107 MGI:3696608 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
JBrowse link
G Plekha1 pleckstrin homology domain containing A1 acts_upstream_of_or_within ISO MGI:3526857 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 1:201,429,716...201,481,411
Ensembl chr 1:201,429,771...201,480,877
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in ISO (PMID:11704759) RGD PMID:11704759 NCBI chr12:40,895,515...40,955,999
Ensembl chr12:40,895,515...40,955,999
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IEA
(PMID:20512159)
GO_REF:0000107
RGD
Ensembl
PMID:20512159 GO_REF:0000107 NCBI chr13:44,578,208...44,649,876
Ensembl chr13:44,615,553...44,648,620
JBrowse link
G Rras RAS related involved_in ISO (PMID:24705357) RGD PMID:24705357 NCBI chr 1:101,012,822...101,016,720
Ensembl chr 1:101,012,822...101,016,720
JBrowse link
G Schip1 schwannomin interacting protein 1 acts_upstream_of_or_within ISO MGI:3526869 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 2:172,312,290...173,087,236
Ensembl chr 2:172,312,298...172,459,165
JBrowse link
G Scx scleraxis bHLH transcription factor acts_upstream_of_or_within ISO (PMID:18498113) RGD PMID:18498113 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Sgpl1 sphingosine-1-phosphate lyase 1 acts_upstream_of_or_within ISO MGI:3526851 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr20:30,699,936...30,769,178
Ensembl chr20:30,699,872...30,749,940
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (MGI:1095997|PMID:9284043), (MGI:2176418|PMID:11731796) RGD PMID:9284043 PMID:11731796 MGI:1095997 MGI:2176418 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179191 (MGI:4822099|PMID:20501333)
UniProt
RGD
PMID:20501333 GO_REF:0000024 MGI:4822099 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:96770 (MGI:3722225|PMID:17699607) RGD PMID:17699607 MGI:3722225 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (MGI:1313057|PMID:9811866) RGD PMID:9811866 MGI:1313057 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (PMID:18498113) RGD PMID:18498113 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO (PMID:18498113) RGD PMID:18498113 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:18498113)
(PMID:12651933)
AgBase
RGD
PMID:12651933 PMID:18498113 GO_REF:0000024 NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
JBrowse link
G Tiparp TCDD-inducible poly(ADP-ribose) polymerase acts_upstream_of_or_within ISO MGI:3526866 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 2:157,316,293...157,342,979
Ensembl chr 2:157,316,266...157,341,469
JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:3044412 (MGI:4939992|PMID:20691403), (MGI:4949824|PMID:20574024) RGD PMID:20574024 PMID:20691403 MGI:4939992 MGI:4949824 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510
JBrowse link
G Zfp950 zinc finger protein 950 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 1:282,490,698...282,492,912 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    developmental process 6792
      anatomical structure development 6265
        face development 59
          face morphogenesis 39
Path 2
Term Annotations click to browse term
  biological_process 19612
    developmental process 6792
      anatomical structure development 6265
        head development 1025
          face development 59
            face morphogenesis 39
paths to the root