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ONTOLOGY REPORT - ANNOTATIONS

Term:retinal rod cell differentiation
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Accession:GO:0060221 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a retinal rod cell.

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retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004936568:4,640,611...4,644,627
Ensembl chrNW_004936568:4,638,637...4,644,502 		JBrowse link
G Cntf ciliary neurotrophic factor involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15207851) Ensembl
MGI		 PMID:15207851 GO_REF:0000107 NCBI chrNW_004936581:3,710,171...3,715,753
Ensembl chrNW_004936581:3,710,160...3,715,638 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19815523) Ensembl
MGI		 PMID:19815523 GO_REF:0000107 NCBI chrNW_004936529:1,735,258...1,740,297
Ensembl chrNW_004936529:1,735,440...1,742,567 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19815523) Ensembl
MGI		 PMID:19815523 GO_REF:0000107 NCBI chrNW_004936704:1,079,255...1,093,732
Ensembl chrNW_004936704:1,084,587...1,093,691 		JBrowse link
G Ndp norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9071226) Ensembl
MGI		 PMID:9071226 GO_REF:0000107 NCBI chrNW_004936502:10,080,169...10,105,155
Ensembl chrNW_004936502:10,080,145...10,105,328 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004936592:1,706,979...1,806,345
Ensembl chrNW_004936592:1,707,693...1,730,617 		JBrowse link
G Rorb RAR related orphan receptor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25296752) Ensembl
MGI		 PMID:25296752 GO_REF:0000107 NCBI chrNW_004936503:10,294,530...10,473,070
Ensembl chrNW_004936503:10,295,167...10,470,813 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19490914) Ensembl
MGI		 PMID:19490914 GO_REF:0000107 NCBI chrNW_004936501:128,386...132,648
Ensembl chrNW_004936501:127,703...132,704 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19490914) Ensembl
MGI		 PMID:19490914 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15207851) Ensembl
MGI		 PMID:15207851 GO_REF:0000107 NCBI chrNW_004936490:17,119,189...17,178,402
Ensembl chrNW_004936490:17,117,290...17,178,402 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004936560:2,881,631...3,057,256
Ensembl chrNW_004936560:2,881,977...3,038,725 		JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chrNW_004936491:17,152,759...17,342,648 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15173597) Ensembl
MGI		 PMID:15173597 GO_REF:0000107 NCBI chrNW_004936471:31,962,500...32,019,516
Ensembl chrNW_004936471:31,962,336...32,020,712 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17712420) Ensembl
MGI		 PMID:17712420 GO_REF:0000107 NCBI chrNW_004936490:17,305,033...17,312,167
Ensembl chrNW_004936490:17,304,586...17,314,521 		JBrowse link
G Nrl neural retina leucine zipper involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11694879) Ensembl
MGI
TreeGrafter		 PMID:11694879 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936722:448,006...454,064
Ensembl chrNW_004936722:447,967...454,553 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10516311) Ensembl
MGI		 PMID:10516311 GO_REF:0000107 NCBI chrNW_004936680:267,850...621,467
Ensembl chrNW_004936680:267,596...615,928 		JBrowse link
G Rorb RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:10,294,530...10,473,070
Ensembl chrNW_004936503:10,295,167...10,470,813 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004936496:1,524,123...1,583,114 JBrowse link
G Rpgrip1 RPGR interacting protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936880:440,900...511,503
Ensembl chrNW_004936880:440,737...512,685 		JBrowse link
G Rpgrip1l RPGRIP1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936475:6,219,187...6,321,612
Ensembl chrNW_004936475:6,215,475...6,321,618 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936593:2,475,199...2,500,593
Ensembl chrNW_004936593:2,472,946...2,500,604 		JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chrNW_004936483:723,784...856,839
Ensembl chrNW_004936483:724,018...858,855 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004936623:4,478,421...4,503,207
Ensembl chrNW_004936623:4,467,837...4,494,390 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15969
    developmental process 6329
      anatomical structure morphogenesis 2774
        retina morphogenesis in camera-type eye 81
          camera-type eye photoreceptor cell differentiation 38
            retinal rod cell differentiation 22
              retinal rod cell development 12
              retinal rod cell fate commitment + 1
Path 2
Term Annotations click to browse term
  biological_process 15969
    developmental process 6329
      anatomical structure development 5961
        multicellular organism development 4836
          system development 4211
            sensory system development 471
              visual system development 465
                eye development 462
                  camera-type eye development 414
                    retina development in camera-type eye 212
                      neural retina development 97
                        camera-type eye photoreceptor cell differentiation 38
                          retinal rod cell differentiation 22
                            retinal rod cell development 12
                            retinal rod cell fate commitment + 1
paths to the root