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ONTOLOGY REPORT - ANNOTATIONS

Term:camera-type eye photoreceptor cell differentiation
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Accession:GO:0060219 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a photoreceptor cell in a camera-type eye.


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camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSCAM DS cell adhesion molecule involved_in ISS UniProt GO_REF:0000024 NCBI chr21:40,010,999...40,847,158
Ensembl chr21:40,010,999...40,847,158 		JBrowse link
G PROM1 prominin 1 involved_in ISS
IEA
IBA
IMP		 (PMID:18654668) UniProt
TreeGrafter
GO_Central
BHF-UCL		 PMID:18654668 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:15,968,228...16,084,023
Ensembl chr 4:15,963,076...16,084,378 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20300562) Ensembl
MGI		 PMID:20300562 GO_REF:0000107 NCBI chr11:62,613,257...62,615,116
Ensembl chr11:62,611,722...62,615,116 		JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:73,334,384...73,644,445
Ensembl chr17:73,334,384...73,644,445 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chr 3:27,372,723...27,484,384
Ensembl chr 3:27,372,723...27,484,420 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21646512) Ensembl
MGI		 PMID:21646512 GO_REF:0000107 NCBI chr14:88,824,153...88,881,079
Ensembl chr14:88,824,153...88,881,078 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18582859) Ensembl
MGI		 PMID:18582859 GO_REF:0000107 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:10,636,604...10,796,646
Ensembl chr 1:10,636,604...10,796,650 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16249514) Ensembl
MGI		 PMID:16249514 GO_REF:0000107 NCBI chr11:67,452,403...67,461,752
Ensembl chr11:67,452,406...67,461,752 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr 2:98,346,456...98,398,601
Ensembl chr 2:98,346,188...98,398,601 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324 		JBrowse link
G DIO3 iodothyronine deiodinase 3 involved_in
acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20203194) Ensembl
MGI		 PMID:20203194 GO_REF:0000107 NCBI chr14:101,561,495...101,563,452
Ensembl chr14:101,560,139...101,563,452 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17065522), (PMID:21052544) Ensembl
MGI		 PMID:17065522 PMID:21052544 GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21052544) Ensembl
MGI		 PMID:21052544 GO_REF:0000107 NCBI chr 5:45,254,948...45,696,380
Ensembl chr 5:45,254,948...45,696,498 		JBrowse link
G MIR124-1 microRNA 124-1 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr 8:9,903,388...9,903,472
Ensembl chr 8:9,903,388...9,903,472 		JBrowse link
G MIR124-2 microRNA 124-2 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr 8:64,379,149...64,379,257
Ensembl chr 8:64,379,149...64,379,257 		JBrowse link
G MIR182 microRNA 182 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr 7:129,770,383...129,770,492
Ensembl chr 7:129,770,383...129,770,492 		JBrowse link
G MIR183 microRNA 183 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr 7:129,774,905...129,775,014
Ensembl chr 7:129,774,905...129,775,014 		JBrowse link
G MIR96 microRNA 96 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr 7:129,774,692...129,774,769
Ensembl chr 7:129,774,692...129,774,769 		JBrowse link
G PDE6C phosphodiesterase 6C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21052544) Ensembl
MGI		 PMID:21052544 GO_REF:0000107 NCBI chr10:93,612,537...93,666,010
Ensembl chr10:93,612,537...93,666,010 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G THRB thyroid hormone receptor beta involved_in
acts_upstream_of		 IEA
ISO		 (PMID:20203194) Ensembl
MGI		 PMID:20203194 GO_REF:0000107 NCBI chr 3:24,117,153...24,495,708
Ensembl chr 3:24,117,153...24,495,756 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:119,415,476...119,424,985
Ensembl chr11:119,415,476...119,424,985 		JBrowse link
G USH1C USH1 protein network component harmonin involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr11:17,493,900...17,544,416
Ensembl chr11:17,493,895...17,544,416 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chr12:76,344,474...76,348,415
Ensembl chr12:76,344,474...76,348,415 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19815523) Ensembl
MGI		 PMID:19815523 GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19815523) Ensembl
MGI		 PMID:19815523 GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:16452096) Ensembl
MGI		 PMID:16452096 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chr 2:73,385,758...73,609,919
Ensembl chr 2:73,385,758...73,625,166 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:15173597) Ensembl
MGI
BHF-UCL		 PMID:15173597 GO_REF:0000024 GO_REF:0000107 NCBI chr15:72,686,207...72,738,473
Ensembl chr15:72,686,179...72,738,475 		JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17255172) Ensembl
MGI		 PMID:17255172 GO_REF:0000107 NCBI chr20:63,005,927...63,006,964
Ensembl chr20:63,005,927...63,007,035 		JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:17921253) MGI PMID:17921253 NCBI chr 1:196,652,043...196,747,504
Ensembl chr 1:196,651,754...196,752,476 		JBrowse link
G MIAT myocardial infarction associated transcript acts_upstream_of_or_within ISO (PMID:16877424) MGI PMID:16877424 NCBI chr22:26,646,429...26,676,478
Ensembl chr22:26,646,411...26,676,475 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17712420) Ensembl
MGI		 PMID:17712420 GO_REF:0000107 NCBI chr17:42,536,241...42,544,449
Ensembl chr17:42,536,241...42,544,449 		JBrowse link
G NRL neural retina leucine zipper involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:11694879) Ensembl
MGI
GO_Central		 PMID:11694879 GO_REF:0000033 GO_REF:0000107 NCBI chr14:24,078,662...24,114,949
Ensembl chr14:24,078,662...24,115,010 		JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10516311) Ensembl
MGI		 PMID:10516311 GO_REF:0000107 NCBI chr 9:84,668,522...85,027,054
Ensembl chr 9:84,668,375...85,095,751 		JBrowse link
G RORB RAR related orphan receptor B involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr14:21,280,083...21,351,301
Ensembl chr14:21,280,083...21,351,301 		JBrowse link
G RPGRIP1L RPGRIP1 like involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr16:53,598,153...53,703,859
Ensembl chr16:53,598,153...53,703,938 		JBrowse link
G SAMD11 sterile alpha motif domain containing 11 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:923,923...944,574
Ensembl chr 1:923,923...944,575 		JBrowse link
G SAMD7 sterile alpha motif domain containing 7 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:169,911,572...169,939,175
Ensembl chr 3:169,911,572...169,939,175 		JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chr15:31,001,065...31,161,160
Ensembl chr15:31,001,065...31,161,160 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chr12:76,344,474...76,348,415
Ensembl chr12:76,344,474...76,348,415 		JBrowse link
G CNTF ciliary neurotrophic factor involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15207851) Ensembl
MGI		 PMID:15207851 GO_REF:0000107 NCBI chr11:58,622,665...58,625,733
Ensembl chr11:58,622,665...58,625,733 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19815523) Ensembl
MGI		 PMID:19815523 GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19815523) Ensembl
MGI		 PMID:19815523 GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9071226) Ensembl
MGI		 PMID:9071226 GO_REF:0000107 NCBI chr  X:43,948,776...43,973,390
Ensembl chr  X:43,948,776...43,973,395 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr 7:137,227,341...137,343,733
Ensembl chr 7:137,227,341...137,343,774 		JBrowse link
G RORB RAR related orphan receptor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25296752) Ensembl
MGI		 PMID:25296752 GO_REF:0000107 NCBI chr 9:74,497,335...74,693,177
Ensembl chr 9:74,497,335...74,693,177 		JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:19490914) Ensembl
MGI
UniProt		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr16:981,770...986,979
Ensembl chr16:981,444...986,979 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:19490914) Ensembl
MGI
UniProt		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15207851) Ensembl
MGI		 PMID:15207851 GO_REF:0000107 NCBI chr17:42,313,324...42,388,442
Ensembl chr17:42,313,324...42,388,568 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:10,636,604...10,796,646
Ensembl chr 1:10,636,604...10,796,650 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    developmental process 7610
      anatomical structure morphogenesis 3195
        retina morphogenesis in camera-type eye 92
          camera-type eye photoreceptor cell differentiation 48
            camera-type eye photoreceptor cell fate commitment + 2
            retinal cone cell differentiation + 22
            retinal rod cell differentiation + 26
Path 2
Term Annotations click to browse term
  biological_process 19669
    developmental process 7610
      anatomical structure development 7020
        multicellular organism development 5632
          system development 4908
            sensory system development 518
              visual system development 510
                eye development 507
                  camera-type eye development 453
                    retina development in camera-type eye 234
                      neural retina development 110
                        camera-type eye photoreceptor cell differentiation 48
                          camera-type eye photoreceptor cell fate commitment + 2
                          retinal cone cell differentiation + 22
                          retinal rod cell differentiation + 26
paths to the root