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ONTOLOGY REPORT - ANNOTATIONS

Term:ciliary membrane
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Accession:GO:0060170 term browser browse the term
Definition:The portion of the plasma membrane surrounding a cilium.
Comment:Note that cilia and eukaryotic flagella are deemed to be equivalent.
Synonyms:exact_synonym: cilial membrane;   cilium membrane
 narrow_synonym: flagellar membrane;   flagellum membrane
 alt_id: GO:0020017

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ciliary membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADCY3 adenylate cyclase 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:82,752,786...82,858,727
Ensembl chr14:82,753,177...82,859,415 		JBrowse link
G ARL13A ARF like GTPase 13A located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:89,310,424...89,332,926
Ensembl chr  X:89,312,723...89,330,634 		JBrowse link
G ARL13B ARF like GTPase 13B located_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:86,648,924...86,722,006
Ensembl chr22:86,651,076...86,721,948 		JBrowse link
G ARL6 ARF like GTPase 6 located_in IEA UniProt GO_REF:0000044 NCBI chr22:82,909,453...82,946,253
Ensembl chr22:82,905,910...82,946,149 		JBrowse link
G BBIP1 BBSome interacting protein 1 located_in
part_of		 IEA
ISO		 (PMID:19081074) Ensembl
ComplexPortal		 PMID:19081074 GO_REF:0000107 NCBI chr 9:103,836,389...103,857,028 JBrowse link
G BBS1 Bardet-Biedl syndrome 1 located_in
part_of		 IEA
ISO		 (PMID:19081074) Ensembl
ComplexPortal		 PMID:19081074 GO_REF:0000107 NCBI chr 1:7,737,887...7,765,022
Ensembl chr 1:7,737,578...7,764,732 		JBrowse link
G BBS2 Bardet-Biedl syndrome 2 located_in
part_of		 IEA
ISO		 (PMID:19081074) UniProt
ComplexPortal
Ensembl		 PMID:19081074 GO_REF:0000044 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:42,395,387...42,430,204
Ensembl chr 5:42,395,230...42,430,154 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 located_in
part_of		 IEA
ISO		 (PMID:19081074) Ensembl
ComplexPortal		 PMID:19081074 GO_REF:0000107 NCBI chr26:10,742,982...10,799,615
Ensembl chr26:10,743,850...10,775,908 		JBrowse link
G BBS5 Bardet-Biedl syndrome 5 located_in
part_of		 IEA
ISO		 (PMID:19081074) UniProt
ComplexPortal
Ensembl		 PMID:19081074 GO_REF:0000044 GO_REF:0000104 GO_REF:0000107 NCBI chr10:54,995,928...55,021,589
Ensembl chr10:54,996,240...55,021,580 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 located_in
part_of		 IEA
ISO		 (PMID:19081074) Ensembl
ComplexPortal		 PMID:19081074 GO_REF:0000107 NCBI chr 7:69,100,287...69,153,009
Ensembl chr 7:69,101,662...69,152,768 		JBrowse link
G BBS9 Bardet-Biedl syndrome 9 located_in
part_of		 IEA
ISO		 (PMID:19081074) Ensembl
ComplexPortal		 PMID:19081074 GO_REF:0000107 NCBI chr21:24,807,906...25,301,566
Ensembl chr21:24,807,625...25,301,587 		JBrowse link
G CASK calcium/calmodulin dependent serine protein kinase located_in ISO PMID:18596612 BHF-UCL PMID:18596612 RGD:8554451 NCBI chr  X:38,704,623...39,121,309 JBrowse link
G CD24 CD24 molecule located_in ISO (PMID:11978835) MGI PMID:11978835 NCBI chr13:66,863,164...66,868,951 JBrowse link
G CEACAM1 CEA cell adhesion molecule 1 located_in ISO (PMID:22179047) MGI PMID:22179047 NCBI chr 6:36,708,368...36,731,729
Ensembl chr 6:36,708,311...36,730,189 		JBrowse link
G CLTB clathrin light chain B located_in IEA Ensembl GO_REF:0000107 NCBI chr23:78,396,089...78,420,860
Ensembl chr23:78,396,413...78,420,819 		JBrowse link
G CNGA2 cyclic nucleotide gated channel subunit alpha 2 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chr  X:126,277,931...126,302,167
Ensembl chr  X:126,295,236...126,301,141 		JBrowse link
G DRD1 dopamine receptor D1 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chr23:77,587,340...77,591,434 JBrowse link
G DRD2 dopamine receptor D2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:104,774,632...104,843,417
Ensembl chr 1:104,774,180...104,842,736 		JBrowse link
G DRD5 dopamine receptor D5 located_in IEA Ensembl GO_REF:0000107 NCBI chr27:40,267,681...40,270,061
Ensembl chr27:40,268,235...40,269,671 		JBrowse link
G EFCAB7 EF-hand calcium binding domain 7 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:69,504,889...69,564,538
Ensembl chr20:69,517,867...69,562,294 		JBrowse link
G EPS15 epidermal growth factor receptor pathway substrate 15 located_in ISO (PMID:20427320) MGI PMID:20427320 NCBI chr20:81,439,017...81,599,626
Ensembl chr20:81,439,025...81,602,710 		JBrowse link
G EVC EvC ciliary complex subunit 1 located_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chr27:41,853,475...41,944,584
Ensembl chr27:41,861,918...41,944,333 		JBrowse link
G EVC2 EvC ciliary complex subunit 2 located_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chr27:41,703,062...41,851,231
Ensembl chr27:41,703,491...41,850,904 		JBrowse link
G GPI glucose-6-phosphate isomerase located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:29,404,067...29,451,290
Ensembl chr 6:29,403,500...29,453,162 		JBrowse link
G GPR157 G protein-coupled receptor 157 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:122,631,383...122,650,163
Ensembl chr20:122,632,218...122,649,115 		JBrowse link
G GPR88 G protein-coupled receptor 88 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:32,799,493...32,803,502
Ensembl chr20:32,801,372...32,802,526 		JBrowse link
G IQCE IQ motif containing E located_in ISO (PMID:24582806) UniProt PMID:24582806 NCBI chr28:18,963,871...19,014,509
Ensembl chr28:18,963,944...19,019,009 		JBrowse link
G LOC103219967 thrombospondin-type laminin G domain and EAR repeat-containing protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:88,219,663...88,425,531
Ensembl chr 2:88,221,529...88,287,701 		JBrowse link
G LOC103233314 transmembrane protein 231 located_in IEA UniProt
Ensembl
TreeGrafter		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:61,023,700...61,043,183
Ensembl chr 5:61,025,388...61,042,792 		JBrowse link
G MCHR1 melanin concentrating hormone receptor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:23,240,509...23,245,553
Ensembl chr19:23,241,487...23,243,950 		JBrowse link
G MOSMO modulator of smoothened located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:19,679,299...19,760,484
Ensembl chr 5:19,679,317...19,758,166 		JBrowse link
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting located_in ISO (PMID:38247840) UniProt PMID:38247840 NCBI chr21:10,850,618...11,030,099 JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel located_in IEA UniProt GO_REF:0000044 NCBI chr 7:36,369,226...36,445,713
Ensembl chr 7:36,369,524...36,443,612 		JBrowse link
G PKD2L1 polycystin 2 like 1, transient receptor potential cation channel located_in IEA UniProt GO_REF:0000044 NCBI chr 9:93,319,408...93,363,389 JBrowse link
G RAB8A RAB8A, member RAS oncogene family located_in ISO (PMID:29038301) MGI PMID:29038301 NCBI chr 6:14,611,938...14,634,086
Ensembl chr 6:14,611,868...14,634,487 		JBrowse link
G SCNN1A sodium channel epithelial 1 subunit alpha located_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,384,073...6,418,620
Ensembl chr11:6,383,956...6,416,337 		JBrowse link
G SEPTIN2 septin 2 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr10:127,378,393...127,421,012
Ensembl chr10:127,387,280...127,421,201 		JBrowse link
G SHANK2 SH3 and multiple ankyrin repeat domains 2 part_of
located_in		 ISO PMID:18596612 CACAO
BHF-UCL		 PMID:18596612 RGD:8554451 NCBI chr 1:3,453,268...4,104,515 JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 part_of
located_in		 ISO PMID:18596612 CACAO
BHF-UCL		 PMID:18596612 RGD:8554451 NCBI chr19:33,155,695...33,209,679
Ensembl chr19:33,155,770...33,208,224 		JBrowse link
G SMO smoothened, frizzled class receptor located_in IEA Ensembl GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G SNAP29 synaptosome associated protein 29 located_in IEA UniProt GO_REF:0000044 NCBI chr19:4,797,690...4,827,573
Ensembl chr19:4,797,725...4,830,251 		JBrowse link
G SSTR3 somatostatin receptor 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:19,908,562...19,916,787
Ensembl chr19:19,910,898...19,912,154 		JBrowse link
G TAS2R4 taste 2 receptor member 4 located_in IEA UniProt GO_REF:0000044 NCBI chr21:110,522,405...110,526,497
Ensembl chr21:110,524,134...110,525,030 		JBrowse link
G TMEM17 transmembrane protein 17 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chr14:44,462,402...44,468,983
Ensembl chr14:44,462,158...44,468,975 		JBrowse link
G TMEM67 transmembrane protein 67 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:88,726,783...88,818,111
Ensembl chr 8:88,726,837...88,792,049 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 located_in
part_of		 IEA
ISO		 (PMID:19081074) Ensembl
ComplexPortal		 PMID:19081074 GO_REF:0000107 NCBI chr24:66,483,808...66,539,717
Ensembl chr24:66,483,864...66,539,142 		JBrowse link
G UMOD uromodulin located_in IEA UniProt GO_REF:0000044 NCBI chr 5:18,620,927...18,641,312
Ensembl chr 5:18,619,895...18,638,719 		JBrowse link
ciliary necklace term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADCY3 adenylate cyclase 3 ISO MMO:0000538 RGD PMID:7861185 RGD:407570624 NCBI chr14:82,752,786...82,858,727
Ensembl chr14:82,753,177...82,859,415 		JBrowse link
G GNAL G protein subunit alpha L ISO MMO:0000538 RGD PMID:7861185 RGD:407570624 NCBI chr18:69,508,254...69,699,628
Ensembl chr18:69,510,512...69,635,000 		JBrowse link
ciliary pocket membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EHD1 EH domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,356,128...9,382,204
Ensembl chr 1:9,356,177...9,382,832 		JBrowse link
G EHD3 EH domain containing 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:76,237,345...76,271,557
Ensembl chr14:76,236,246...76,271,546 		JBrowse link
G SNAP29 synaptosome associated protein 29 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:4,797,690...4,827,573
Ensembl chr19:4,797,725...4,830,251 		JBrowse link
non-motile cilium membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNGA2 cyclic nucleotide gated channel subunit alpha 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,277,931...126,302,167
Ensembl chr  X:126,295,236...126,301,141 		JBrowse link
G CNGA4 cyclic nucleotide gated channel subunit alpha 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:58,581,702...58,592,733
Ensembl chr 1:58,582,175...58,588,376 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 located_in ISO PMID:10377344 UniProt PMID:10377344 RGD:632392 NCBI chr 5:43,814,500...43,903,323 JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDHR1 cadherin related family member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:47,611,969...47,638,846
Ensembl chr 9:47,613,257...47,636,794 		JBrowse link
G GNB1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chr20:129,654,890...129,765,765
Ensembl chr20:129,707,085...129,766,667 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,391,260...7,407,549
Ensembl chr16:7,392,419...7,406,305 		JBrowse link
G LOC103246137 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chr27:2,273,540...2,313,083
Ensembl chr27:2,293,765...2,312,761 		JBrowse link
G PDE6G phosphodiesterase 6G located_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:73,582,249...73,594,139
Ensembl chr16:73,583,362...73,585,414 		JBrowse link
G PDE6H phosphodiesterase 6H located_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:14,869,864...14,880,307
Ensembl chr11:14,870,498...14,880,324 		JBrowse link
G PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20089132 RGD:5131540 NCBI chr 5:54,767,935...54,845,700
Ensembl chr 5:54,767,941...54,845,527 		JBrowse link
G PRCD photoreceptor disc component located_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr16:45,124,623...45,156,887
Ensembl chr16:45,135,485...45,137,921 		JBrowse link
G PROM1 prominin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr27:34,093,699...34,243,630
Ensembl chr27:34,129,532...34,243,778 		JBrowse link
G PRPH peripherin located_in ISO (PMID:10414956) MGI PMID:10414956 NCBI chr11:45,520,506...45,525,548
Ensembl chr11:45,522,059...45,525,212 		JBrowse link
G RDH11 retinol dehydrogenase 11 NOT|located_in ISO (PMID:15790565) MGI PMID:15790565 NCBI chr24:44,911,830...44,932,632
Ensembl chr24:44,909,001...44,932,611 		JBrowse link
G RHO rhodopsin located_in ISO
IEA		 RGD
Ensembl		 PMID:2209754 GO_REF:0000107 RGD:6893561 NCBI chr22:51,513,611...51,520,589
Ensembl chr22:51,515,081...51,519,974 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:11,289,819...11,292,200
Ensembl chr 1:11,289,818...11,291,890 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17898
    cellular anatomical structure 17793
      membrane 8259
        organelle membrane 2916
          bounding membrane of organelle 1586
            ciliary membrane 65
              ciliary necklace 2
              ciliary pocket membrane 3
              cone photoreceptor disc membrane 0
              non-motile cilium membrane 3
              photoreceptor outer segment membrane 13
Path 2
Term Annotations click to browse term
  cellular_component 17898
    cellular anatomical structure 17793
      cell periphery 5400
        plasma membrane 4939
          plasma membrane region 1427
            cell projection membrane 350
              ciliary membrane 65
                ciliary necklace 2
                ciliary pocket membrane 3
                cone photoreceptor disc membrane 0
                non-motile cilium membrane 3
                photoreceptor outer segment membrane 13
paths to the root