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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of post-transcriptional gene silencing
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Accession:GO:0060147 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism.
Synonyms:exact_synonym: regulation of posttranscriptional gene silencing



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regulation of post-transcriptional gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Focad focadhesin involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 4:88,012,823...88,329,248
Ensembl chr 4:88,012,866...88,329,248
JBrowse link
negative regulation of miRNA maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esr1 estrogen receptor 1 (alpha) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:4,561,989...4,955,633
Ensembl chr10:4,561,593...4,955,614
JBrowse link
G Hnf1a HNF1 homeobox A involved_in ISO RGD
MGI
PMID:23674172 GO_REF:0000096 MGI:4417868 RGD:150540303 NCBI chr 5:115,087,039...115,109,121
Ensembl chr 5:115,087,039...115,109,153
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:62,207,132...62,348,200
Ensembl chr11:62,207,252...62,349,367
JBrowse link
G Ncor2 nuclear receptor co-repressor 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:125,094,217...125,256,302
Ensembl chr 5:125,094,217...125,256,283
JBrowse link
G Ppp3ca protein phosphatase 3, catalytic subunit, alpha isoform involved_in IDA (MGI:5562625|PMID:24161931) BHF-UCL PMID:24161931 MGI:5562625 NCBI chr 3:136,375,778...136,643,488
Ensembl chr 3:136,375,885...136,643,488
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IGI (MGI:5013521|PMID:21522133) MGI PMID:21522133 MGI:5013521 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699
JBrowse link
G Zc3h10 zinc finger CCCH type containing 10 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:128,379,429...128,383,877
Ensembl chr10:128,377,832...128,383,643
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:125,012,207...125,021,674
Ensembl chr 4:125,012,216...125,021,633
JBrowse link
G Zmpste24 zinc metallopeptidase, STE24 acts_upstream_of_or_within IMP
IGI
(MGI:5013521|PMID:21522133) MGI PMID:21522133 MGI:5013521 NCBI chr 4:120,916,434...120,955,452
Ensembl chr 4:120,916,434...120,955,438
JBrowse link
negative regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr18:36,896,724...36,899,267
Ensembl chr18:36,896,724...36,899,267
JBrowse link
G Elavl1 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:4,334,781...4,375,104
Ensembl chr 8:4,335,382...4,375,413
JBrowse link
G Kcnq1ot1 KCNQ1 overlapping transcript 1 acts_upstream_of ISO (PMID:30241939) BHF-UCL PMID:30241939 NCBI chr 7:142,766,848...142,850,284
Ensembl chr 7:142,757,195...142,850,286
JBrowse link
G Neat1 nuclear paraspeckle assembly transcript 1 (non-protein coding) involved_in ISO (PMID:28379604) ARUK-UCL PMID:28379604 NCBI chr19:5,874,736...5,895,508
Ensembl chr19:5,874,736...5,895,506
JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 involved_in ISO (PMID:19409607) UniProt PMID:19409607 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:115,337,840...115,467,365
Ensembl chr 6:115,337,912...115,467,360
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
negative regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within IMP (MGI:3573853|PMID:15556947) MGI PMID:15556947 MGI:3573853 NCBI chr 3:89,621,776...89,660,762
Ensembl chr 3:89,622,329...89,660,753
JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr15:99,367,965...99,372,611
Ensembl chr15:99,367,960...99,372,611
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:45,252,713...45,362,410
Ensembl chr10:45,252,716...45,362,491
JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 acts_upstream_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:45,252,713...45,362,410
Ensembl chr10:45,252,716...45,362,491
JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in ISO RGD
MGI
PMID:24636259 GO_REF:0000096 MGI:4417868 RGD:12789709 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,178,969
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366
JBrowse link
positive regulation of miRNA maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126
JBrowse link
G Ddx5 DEAD box helicase 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:106,671,181...106,680,011
Ensembl chr11:106,671,181...106,680,011
JBrowse link
G Egfr epidermal growth factor receptor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:16,700,153...16,868,158
Ensembl chr11:16,702,203...16,868,158
JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Lin28a lin-28 homolog A involved_in IDA (MGI:5294254|PMID:21962509) BHF-UCL PMID:21962509 MGI:5294254 NCBI chr 4:133,730,641...133,746,504
Ensembl chr 4:133,730,641...133,746,152
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:64,093,051...64,160,887
Ensembl chr 9:64,093,052...64,160,913
JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:80,941,749...80,960,531
Ensembl chr10:80,941,749...80,969,809
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 acts_upstream_of_or_within IMP (MGI:5574156|PMID:24349493) MGI PMID:24349493 MGI:5574156 NCBI chr13:78,337,090...78,346,992
Ensembl chr13:78,337,092...78,347,876
JBrowse link
G Ripk1 receptor (TNFRSF)-interacting serine-threonine kinase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:34,181,072...34,219,153
Ensembl chr13:34,186,346...34,221,130
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Trp53 transformation related protein 53 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699
JBrowse link
positive regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ajuba ajuba LIM protein involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr14:54,804,926...54,815,118
Ensembl chr14:54,804,929...54,815,015
JBrowse link
G Dhx9 DEAH (Asp-Glu-Ala-His) box polypeptide 9 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:153,331,502...153,363,464
Ensembl chr 1:153,331,504...153,363,406
JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISO
IDA
(MGI:4868681|PMID:20159450) MGI
UniProt
PMID:20159450 GO_REF:0000096 MGI:4834177 MGI:4868681 NCBI chr  X:67,722,142...67,761,569
Ensembl chr  X:67,722,147...67,761,569
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:34,074,133...34,124,129
Ensembl chr 3:34,074,092...34,124,471
JBrowse link
G Limd1 LIM domains containing 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:123,306,790...123,350,617
Ensembl chr 9:123,307,771...123,350,617
JBrowse link
G Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 3:135,290,416...135,397,728
Ensembl chr 3:135,290,416...135,397,308
JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:130,390,509...130,508,875
Ensembl chr 4:130,390,632...130,508,875
JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:8,724,092...8,802,583
Ensembl chr12:8,724,134...8,802,581
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366
JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:128,041,496...128,063,450
Ensembl chr 7:128,041,501...128,063,441
JBrowse link
G Trim71 tripartite motif-containing 71 acts_upstream_of_or_within IMP
IDA
(MGI:4438512|PMID:19898466) MGI PMID:19898466 MGI:4438512 NCBI chr 9:114,340,336...114,393,437
Ensembl chr 9:114,336,201...114,393,437
JBrowse link
G Wtip WT1 interacting protein involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:33,808,966...33,832,742
Ensembl chr 7:33,808,968...33,832,693
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:28,076,209...28,078,653
Ensembl chr 7:28,076,209...28,079,678
JBrowse link
positive regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:46,513,737...46,554,524
Ensembl chr17:46,513,708...46,554,524
JBrowse link
positive regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trub1 TruB pseudouridine (psi) synthase family member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:57,441,323...57,479,437
Ensembl chr19:57,441,344...57,479,437
JBrowse link
regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carlr cardiac and apoptosis-related long non-coding RNA acts_upstream_of_or_within IMP (MGI:5559032|PMID:24710105) MGI PMID:24710105 MGI:5559032 NCBI chr 2:18,804,056...18,806,629
Ensembl chr 2:18,804,056...18,806,629
JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:67,722,142...67,761,569
Ensembl chr  X:67,722,147...67,761,569
JBrowse link
G Lin28a lin-28 homolog A acts_upstream_of_or_within IGI (MGI:4438512|PMID:19898466) MGI PMID:19898466 MGI:4438512 NCBI chr 4:133,730,641...133,746,504
Ensembl chr 4:133,730,641...133,746,152
JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 1:166,028,954...166,066,313
Ensembl chr 1:166,028,770...166,066,316
JBrowse link
G Mir154 microRNA 154 acts_upstream_of_or_within IMP (MGI:5705446|PMID:25959411) MGI PMID:25959411 MGI:5705446 NCBI chr12:109,704,867...109,704,932
Ensembl chr12:109,704,867...109,704,932
JBrowse link
G Mirlet7a-2 microRNA let7a-2 acts_upstream_of_or_within IDA (MGI:4438512|PMID:19898466) MGI PMID:19898466 MGI:4438512 NCBI chr 9:41,448,012...41,448,107
Ensembl chr 9:41,448,012...41,448,107
JBrowse link
G Tnrc6c trinucleotide repeat containing 6C acts_upstream_of_or_within IMP (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr11:117,544,529...117,654,265
Ensembl chr11:117,545,115...117,654,265
JBrowse link
G Trim71 tripartite motif-containing 71 involved_in
acts_upstream_of_or_within
IMP
IGI
(MGI:5448492|PMID:22735451)
(MGI:4438512|PMID:19898466)
UniProt
MGI
PMID:19898466 PMID:22735451 MGI:4438512 MGI:5448492 NCBI chr 9:114,340,336...114,393,437
Ensembl chr 9:114,336,201...114,393,437
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28749
    metabolic process 11577
      regulation of metabolic process 7134
        regulation of macromolecule metabolic process 6603
          regulation of gene expression 5203
            regulation of post-transcriptional gene silencing 51
              negative regulation of post-transcriptional gene silencing + 23
              positive regulation of post-transcriptional gene silencing + 26
              regulation of post-transcriptional gene silencing by RNA + 50
Path 2
Term Annotations click to browse term
  biological_process 28749
    metabolic process 11577
      organic substance metabolic process 11179
        macromolecule metabolic process 9563
          regulation of macromolecule metabolic process 6603
            negative regulation of macromolecule metabolic process 3161
              negative regulation of gene expression 1359
                post-transcriptional gene silencing 331
                  regulation of post-transcriptional gene silencing 51
                    negative regulation of post-transcriptional gene silencing + 23
                    positive regulation of post-transcriptional gene silencing + 26
                    regulation of post-transcriptional gene silencing by RNA + 50
paths to the root