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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of post-transcriptional gene silencing
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Accession:GO:0060147 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism.
Synonyms:exact_synonym: regulation of posttranscriptional gene silencing


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regulation of post-transcriptional gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOCAD focadhesin involved_in IEA InterPro GO_REF:0000002 NCBI chr11:40,265,717...40,577,816
Ensembl chr11:40,265,640...40,577,591 		JBrowse link
negative regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNF1A HNF1 homeobox A ISO RGD PMID:23674172 RGD:150540303 NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21522133) Ensembl
MGI		 PMID:21522133 GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109 		JBrowse link
G ZC3H10 zinc finger CCCH-type containing 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:439,163...445,587 JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21522133) Ensembl
MGI		 PMID:21522133 GO_REF:0000107 NCBI chr15:2,669,546...2,708,480
Ensembl chr15:2,670,326...2,709,160 		JBrowse link
negative regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DND1 DND microRNA-mediated repression inhibitor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:35,825,154...35,827,913
Ensembl chr 2:35,825,636...35,827,840 		JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 involved_in ISO (PMID:26595526) UniProt PMID:26595526 NCBI chr20:52,648,878...52,677,578 JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:116,249,079...116,287,008
Ensembl chr  X:116,249,142...116,321,439 		JBrowse link
negative regulation of post-transcriptional gene silencing by regulatory ncRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAR adenosine deaminase RNA specific involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15556947) Ensembl
MGI		 PMID:15556947 GO_REF:0000107 NCBI chr 7:42,762,021...42,785,192
Ensembl chr 7:42,748,136...42,782,999 		JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCDIN3D BCDIN3 domain containing RNA methyltransferase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr27:4,851,156...4,860,322
Ensembl chr27:4,851,063...4,855,945 		JBrowse link
G LIN28A lin-28 homolog A involved_in ISO (PMID:21247876) UniProt PMID:21247876 NCBI chr 2:73,638,438...73,656,841
Ensembl chr 2:73,614,531...73,628,211
Ensembl chr 2:73,614,531...73,628,211 		JBrowse link
G LIN28B lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:62,403,831...62,529,435
Ensembl chr12:62,403,333...62,524,838 		JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL6 interleukin 6 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:31507089) ARUK-UCL
Ensembl		 PMID:31507089 GO_REF:0000107 NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519 		JBrowse link
G LIN28B lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:62,403,831...62,529,435
Ensembl chr12:62,403,333...62,524,838 		JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:24636259 RGD:12789709 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672 		JBrowse link
positive regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RIPK1 receptor interacting serine/threonine kinase 1 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:26020802) ARUK-UCL
Ensembl		 PMID:26020802 GO_REF:0000107 NCBI chr35:3,367,796...3,407,631
Ensembl chr35:3,263,226...3,405,883 		JBrowse link
positive regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AJUBA ajuba LIM protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:3,272,408...3,302,179
Ensembl chr 8:3,272,405...3,301,708 		JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:116,249,079...116,287,008
Ensembl chr  X:116,249,142...116,321,439 		JBrowse link
G FXR1 FMR1 autosomal homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:14,129,978...14,192,016
Ensembl chr34:14,130,017...14,191,370 		JBrowse link
G LIMD1 LIM domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:42,797,316...42,867,292
Ensembl chr20:42,799,142...42,867,428 		JBrowse link
G PUM1 pumilio RNA binding family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:69,907,655...70,044,055
Ensembl chr 2:69,907,735...70,042,680 		JBrowse link
G PUM2 pumilio RNA binding family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:15,258,264...15,354,001
Ensembl chr17:15,261,389...15,354,586 		JBrowse link
G TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:29,729,246...29,750,703
Ensembl chr28:29,731,950...29,750,229 		JBrowse link
G TRIM71 tripartite motif containing 71 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19898466) Ensembl
MGI		 PMID:19898466 GO_REF:0000107 NCBI chr23:3,888,287...3,959,910
Ensembl chr23:3,893,647...3,960,411 		JBrowse link
G WTIP WT1 interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:117,802,933...117,835,770 JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065 		JBrowse link
positive regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO2 argonaute RISC catalytic component 2 ISO RGD PMID:15147961 RGD:401900682 NCBI chr13:35,169,243...35,230,252
Ensembl chr13:35,180,912...35,268,577 		JBrowse link
positive regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGCR8 DGCR8 microprocessor complex subunit involved_in IEA Ensembl GO_REF:0000107
G TRUB1 TruB pseudouridine synthase family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:25,690,729...25,727,491
Ensembl chr28:25,690,792...25,724,973 		JBrowse link
positive regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G PRPF6 pre-mRNA processing factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:47,439,210...47,483,531
Ensembl chr24:47,433,130...47,483,522 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIN28A lin-28 homolog A acts_upstream_of_or_within ISO (PMID:19898466) MGI PMID:19898466 NCBI chr 2:73,638,438...73,656,841
Ensembl chr 2:73,614,531...73,628,211
Ensembl chr 2:73,614,531...73,628,211 		JBrowse link
G MAEL maelstrom spermatogenic transposon silencer involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:31,364,111...31,394,675
Ensembl chr 7:31,364,293...31,409,435 		JBrowse link
G MIRLET7A-2 microRNA let-7a-2 acts_upstream_of_or_within ISO (PMID:19898466) MGI PMID:19898466 NCBI chr 5:12,052,786...12,052,881
Ensembl chr 5:12,052,786...12,052,881 		JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (PMID:22187428) MGI PMID:22187428 NCBI chr 9:3,018,599...3,122,664
Ensembl chr 9:3,020,533...3,171,471 		JBrowse link
G TRIM71 tripartite motif containing 71 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19898466) Ensembl
MGI		 PMID:19898466 GO_REF:0000107 NCBI chr23:3,888,287...3,959,910
Ensembl chr23:3,893,647...3,960,411 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    metabolic process 10998
      regulation of metabolic process 6412
        regulation of macromolecule metabolic process 5876
          regulation of macromolecule biosynthetic process 5079
            regulation of gene expression 4962
              regulation of post-transcriptional gene silencing 35
                negative regulation of post-transcriptional gene silencing + 14
                positive regulation of post-transcriptional gene silencing + 18
                regulation of post-transcriptional gene silencing by regulatory ncRNA + 34
Path 2
Term Annotations click to browse term
  biological_process 17917
    biological regulation 12438
      regulation of biological process 12078
        regulation of metabolic process 6412
          regulation of biosynthetic process 5261
            regulation of cellular biosynthetic process 5175
              regulation of macromolecule biosynthetic process 5079
                regulation of gene expression 4962
                  post-transcriptional regulation of gene expression 816
                    post-transcriptional gene silencing 346
                      regulation of post-transcriptional gene silencing 35
                        negative regulation of post-transcriptional gene silencing + 14
                        positive regulation of post-transcriptional gene silencing + 18
                        regulation of post-transcriptional gene silencing by regulatory ncRNA + 34
paths to the root