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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of post-transcriptional gene silencing
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Accession:GO:0060147 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism.
Synonyms:exact_synonym: regulation of posttranscriptional gene silencing



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regulation of post-transcriptional gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOCAD focadhesin involved_in IEA InterPro GO_REF:0000002 NCBI chr11:40,265,717...40,577,816
Ensembl chr11:40,265,640...40,577,591
JBrowse link
negative regulation of miRNA maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 involved_in ISO (PMID:22269326) BHF-UCL PMID:22269326 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G ESR1 estrogen receptor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:42,081,952...42,368,544
Ensembl chr 1:42,081,969...42,368,544
JBrowse link
G HNF1A HNF1 homeobox A ISO RGD PMID:23674172 RGD:150540303 NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790
JBrowse link
G NCOR1 nuclear receptor corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:39,687,530...39,837,003
Ensembl chr 5:39,687,543...39,836,464
JBrowse link
G NCOR2 nuclear receptor corepressor 2 involved_in ISO (PMID:20388878) BHF-UCL PMID:20388878 NCBI chr26:5,352,670...5,493,741
Ensembl chr26:5,331,459...5,493,830
JBrowse link
G PPP3CA protein phosphatase 3 catalytic subunit alpha involved_in ISO (MGI:5562625|PMID:24161931) BHF-UCL PMID:24161931 MGI:5562625 NCBI chr32:22,688,141...22,996,693
Ensembl chr32:22,688,143...22,996,688
JBrowse link
G TNF tumor necrosis factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:31124343), (PMID:31824476) Ensembl
Ensembl
ARUK-UCL
PMID:31124343 PMID:31824476 GO_REF:0000107 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425
JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5013521|PMID:21522133) MGI
Ensembl
Ensembl
PMID:21522133 GO_REF:0000107 MGI:5013521 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
G ZC3H10 zinc finger CCCH-type containing 10 involved_in ISO (PMID:28431233) UniProt PMID:28431233 NCBI chr10:439,163...445,587 JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:4,972,369...4,984,218
Ensembl chr15:4,972,956...4,980,371
JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5013521|PMID:21522133) Ensembl
MGI
PMID:21522133 GO_REF:0000107 MGI:5013521 NCBI chr15:2,669,546...2,708,480
Ensembl chr15:2,670,326...2,709,160
JBrowse link
negative regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G DND1 DND microRNA-mediated repression inhibitor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:35,825,154...35,827,913
Ensembl chr 2:35,825,636...35,827,840
JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 involved_in ISO (PMID:27089893)
(PMID:26595526)
BHF-UCL
UniProt
PMID:26595526 PMID:27089893 NCBI chr20:52,648,878...52,677,578 JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:6,134,618...6,265,481
Ensembl chr20:6,050,357...6,207,981
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G TSEN2 tRNA splicing endonuclease subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:6,031,295...6,090,938
Ensembl chr20:6,050,357...6,207,981
JBrowse link
negative regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAR adenosine deaminase RNA specific acts_upstream_of_or_within ISO (MGI:3573853|PMID:15556947) MGI PMID:15556947 MGI:3573853 NCBI chr 7:42,762,021...42,785,192
Ensembl chr 7:42,748,136...42,782,999
JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCDIN3D BCDIN3 domain containing RNA methyltransferase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:4,851,156...4,860,322
Ensembl chr27:4,851,063...4,855,945
JBrowse link
G LIN28B lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chr12:62,403,831...62,529,435
Ensembl chr12:62,403,333...62,524,838
JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL6 interleukin 6 acts_upstream_of
involved_in
ISO
IEA
(PMID:31507089) ARUK-UCL
Ensembl
PMID:31507089 GO_REF:0000107 NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519
JBrowse link
G LIN28B lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chr12:62,403,831...62,529,435
Ensembl chr12:62,403,333...62,524,838
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:24636259 RGD:12789709 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672
JBrowse link
positive regulation of miRNA maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:12,300,706...12,307,931
Ensembl chr 9:12,300,708...12,307,663
JBrowse link
G EGFR epidermal growth factor receptor involved_in ISO (PMID:21673316) BHF-UCL PMID:21673316 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631
JBrowse link
G IL6 interleukin 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:27252421) ARUK-UCL
Ensembl
PMID:27252421 GO_REF:0000107 NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519
JBrowse link
G LIN28A lin-28 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:73,638,438...73,656,841
Ensembl chr 2:73,614,531...73,628,211
Ensembl chr 2:73,614,531...73,628,211
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
JBrowse link
G MAP2K2 mitogen-activated protein kinase kinase 2 involved_in ISO (PMID:24375836) BHF-UCL PMID:24375836 NCBI chr20:55,465,460...55,487,629
Ensembl chr20:55,465,212...55,487,641
JBrowse link
G MYOCD myocardin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:36,674,476...36,774,435
Ensembl chr 5:36,674,300...36,769,327
JBrowse link
G NR2F1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (MGI:5574156|PMID:24349493) MGI PMID:24349493 MGI:5574156 NCBI chr 3:15,707,198...15,716,875
Ensembl chr 3:15,707,640...15,716,875
JBrowse link
G RIPK1 receptor interacting serine/threonine kinase 1 involved_in ISO (PMID:26020802) ARUK-UCL PMID:26020802 NCBI chr35:3,367,796...3,407,631
Ensembl chr35:3,263,226...3,405,883
JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
positive regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AJUBA ajuba LIM protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:3,272,408...3,302,179
Ensembl chr 8:3,272,405...3,301,708
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:116,249,079...116,287,008
Ensembl chr  X:116,249,142...116,321,439
JBrowse link
G FXR1 FMR1 autosomal homolog 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr34:14,129,978...14,192,016
Ensembl chr34:14,130,017...14,191,370
JBrowse link
G LIMD1 LIM domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:42,797,316...42,867,292
Ensembl chr20:42,799,142...42,867,428
JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 involved_in ISO PMID:24676391 BHF-UCL PMID:24676391 RGD:10400879 NCBI chr32:23,948,598...24,040,704
Ensembl chr32:23,942,954...24,040,703
JBrowse link
G PUM1 pumilio RNA binding family member 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:69,907,655...70,044,055
Ensembl chr 2:69,907,735...70,042,680
JBrowse link
G PUM2 pumilio RNA binding family member 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:15,258,264...15,354,001
Ensembl chr17:15,261,389...15,354,586
JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672
JBrowse link
G TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr28:29,729,246...29,750,703
Ensembl chr28:29,731,950...29,750,229
JBrowse link
G TRIM71 tripartite motif containing 71 acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) MGI PMID:19898466 MGI:4438512 NCBI chr23:3,888,287...3,959,910
Ensembl chr23:3,893,647...3,960,411
JBrowse link
G WTIP WT1 interacting protein involved_in ISO (PMID:20616046) UniProt PMID:20616046 NCBI chr 1:117,802,933...117,835,770 JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (PMID:15766526) UniProt PMID:15766526 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
positive regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XPO5 exportin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:11,983,071...12,034,441
Ensembl chr12:11,983,646...12,034,688
JBrowse link
positive regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TRUB1 TruB pseudouridine synthase family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:25,690,729...25,727,491
Ensembl chr28:25,690,792...25,724,973
JBrowse link
regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FMR1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:25464849) UniProt PMID:25464849 NCBI chr  X:116,249,079...116,287,008
Ensembl chr  X:116,249,142...116,321,439
JBrowse link
G LIN28A lin-28 homolog A acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) MGI PMID:19898466 MGI:4438512 NCBI chr 2:73,638,438...73,656,841
Ensembl chr 2:73,614,531...73,628,211
Ensembl chr 2:73,614,531...73,628,211
JBrowse link
G MAEL maelstrom spermatogenic transposon silencer involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 7:31,364,111...31,394,675
Ensembl chr 7:31,364,293...31,409,435
JBrowse link
G MIRLET7A-2 microRNA let-7a-2 acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) MGI PMID:19898466 MGI:4438512 NCBI chr 5:12,052,786...12,052,881
Ensembl chr 5:12,052,786...12,052,881
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr 9:3,018,599...3,122,664
Ensembl chr 9:3,020,533...3,171,471
JBrowse link
G TRIM71 tripartite motif containing 71 involved_in
acts_upstream_of_or_within
ISO (MGI:5448492|PMID:22735451)
(MGI:4438512|PMID:19898466)
UniProt
MGI
PMID:19898466 PMID:22735451 MGI:4438512 MGI:5448492 NCBI chr23:3,888,287...3,959,910
Ensembl chr23:3,893,647...3,960,411
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16445
    metabolic process 10769
      regulation of metabolic process 6611
        regulation of macromolecule metabolic process 6106
          regulation of gene expression 4787
            regulation of post-transcriptional gene silencing 49
              negative regulation of post-transcriptional gene silencing + 22
              positive regulation of post-transcriptional gene silencing + 27
              regulation of post-transcriptional gene silencing by RNA + 48
Path 2
Term Annotations click to browse term
  biological_process 16445
    metabolic process 10769
      organic substance metabolic process 10357
        macromolecule metabolic process 8983
          regulation of macromolecule metabolic process 6106
            negative regulation of macromolecule metabolic process 3054
              negative regulation of gene expression 1346
                post-transcriptional gene silencing 356
                  regulation of post-transcriptional gene silencing 49
                    negative regulation of post-transcriptional gene silencing + 22
                    positive regulation of post-transcriptional gene silencing + 27
                    regulation of post-transcriptional gene silencing by RNA + 48
paths to the root