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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of post-transcriptional gene silencing
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Accession:GO:0060147 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism.
Synonyms:exact_synonym: regulation of posttranscriptional gene silencing

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negative regulation of miRNA maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esr1 estrogen receptor 1 involved_in ISO (PMID:20388878) BHF-UCL PMID:20388878 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353 		JBrowse link
G Hnf1a HNF1 homeobox A ISO RGD PMID:23674172 RGD:150540303 NCBI chrNW_004955455:10,694,102...10,717,613
Ensembl chrNW_004955455:10,694,102...10,717,613 		JBrowse link
G Ncor1 nuclear receptor corepressor 1 involved_in ISO (PMID:20388878) BHF-UCL PMID:20388878 NCBI chrNW_004955467:1,408,292...1,568,539
Ensembl chrNW_004955467:1,409,281...1,546,842 		JBrowse link
G Ncor2 nuclear receptor corepressor 2 involved_in ISO (PMID:20388878) BHF-UCL PMID:20388878 NCBI chrNW_004955482:4,927,482...5,031,848
Ensembl chrNW_004955482:4,942,221...5,031,904 		JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha involved_in ISO (MGI:5562625|PMID:24161931) BHF-UCL PMID:24161931 MGI:5562625 NCBI chrNW_004955496:6,934,542...7,059,745
Ensembl chrNW_004955496:6,908,224...7,059,816 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:22269326) BHF-UCL PMID:22269326 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within ISO (PMID:31124343), (PMID:31824476) ARUK-UCL PMID:31124343 PMID:31824476 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (MGI:5013521|PMID:21522133) MGI PMID:21522133 MGI:5013521 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928 		JBrowse link
G Zc3h10 zinc finger CCCH-type containing 10 involved_in ISO (PMID:28431233) UniProt PMID:28431233 NCBI chrNW_004955458:3,720,451...3,725,196
Ensembl chrNW_004955458:3,720,709...3,725,196 		JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (PMID:22055188) UniProt PMID:22055188 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (MGI:5013521|PMID:21522133) MGI PMID:21522133 MGI:5013521 NCBI chrNW_004955537:82,724...134,609
Ensembl chrNW_004955537:81,920...134,609 		JBrowse link
negative regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO (PMID:18155131) UniProt PMID:18155131 NCBI chrNW_004955418:30,795...33,394
Ensembl chrNW_004955418:30,893...32,936 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISO (PMID:27089893)
(PMID:26595526)		 BHF-UCL
UniProt		 PMID:26595526 PMID:27089893 NCBI chrNW_004955563:1,283,424...1,315,283
Ensembl chrNW_004955563:1,283,421...1,315,283 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19409607) UniProt PMID:19409607 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO (PMID:28522568) BHF-UCL PMID:28522568 NCBI chrNW_004955429:14,814,690...14,936,869
Ensembl chrNW_004955429:14,873,908...14,937,387 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:22269326) BHF-UCL PMID:22269326 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
negative regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase RNA specific acts_upstream_of_or_within ISO (MGI:3573853|PMID:15556947) MGI PMID:15556947 MGI:3573853 NCBI chrNW_004955545:1,078,319...1,106,938
Ensembl chrNW_004955545:1,078,319...1,106,938 		JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO (PMID:23063121) UniProt PMID:23063121 NCBI chrNW_004955547:427,127...432,482
Ensembl chrNW_004955547:427,432...432,455 		JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chrNW_004955411:30,381,208...30,499,678 JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 acts_upstream_of ISO (PMID:31507089) ARUK-UCL PMID:31507089 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chrNW_004955411:30,381,208...30,499,678 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:24636259 RGD:12789709 NCBI chrNW_004955580:674,014...737,586
Ensembl chrNW_004955580:679,109...735,288 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:31507089) ARUK-UCL PMID:31507089 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687 		JBrowse link
positive regulation of miRNA maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chrNW_004955478:7,367,049...7,375,043
Ensembl chrNW_004955478:7,366,956...7,376,358 		JBrowse link
G Egfr epidermal growth factor receptor involved_in ISO (PMID:21673316) BHF-UCL PMID:21673316 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within ISO (PMID:27252421) ARUK-UCL PMID:27252421 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (MGI:5294254|PMID:21962509) BHF-UCL PMID:21962509 MGI:5294254 NCBI chrNW_004955452:5,793,583...5,808,662
Ensembl chrNW_004955452:5,793,583...5,808,662 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 involved_in ISO (PMID:24375836) BHF-UCL PMID:24375836 NCBI chrNW_004955450:9,181,851...9,205,277
Ensembl chrNW_004955450:9,181,851...9,239,648 		JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 involved_in ISO (PMID:24375836) BHF-UCL PMID:24375836 NCBI chrNW_004955495:4,695,239...4,718,380 JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (MGI:5574156|PMID:24349493) MGI PMID:24349493 MGI:5574156 NCBI chrNW_004955418:18,615,548...18,622,984
Ensembl chrNW_004955418:18,614,995...18,624,584 		JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in ISO (PMID:26020802) ARUK-UCL PMID:26020802 NCBI chrNW_004955465:10,127,907...10,167,895
Ensembl chrNW_004955465:10,128,931...10,168,399 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:22578566)
(PMID:26100857)		 ARUK-UCL
BHF-UCL		 PMID:22578566 PMID:26100857 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928 		JBrowse link
positive regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ajuba ajuba LIM protein involved_in ISO (PMID:20616046) UniProt PMID:20616046 NCBI chrNW_004955409:37,318,597...37,329,068
Ensembl chrNW_004955409:37,318,597...37,329,155 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:17531811) UniProt PMID:17531811 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:17057366)
(MGI:4868681|PMID:20159450)		 UniProt PMID:17057366 PMID:20159450 MGI:4868681 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISO (PMID:17057366) UniProt PMID:17057366 NCBI chrNW_004955420:9,903,736...9,966,100
Ensembl chrNW_004955420:9,903,736...9,966,100 		JBrowse link
G Limd1 LIM domain containing 1 involved_in ISO (PMID:20616046) UniProt PMID:20616046 NCBI chrNW_004955420:26,290,792...26,328,637
Ensembl chrNW_004955420:26,291,529...26,328,637 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in ISO PMID:24676391 BHF-UCL PMID:24676391 RGD:10400879 NCBI chrNW_004955496:5,842,734...5,950,995
Ensembl chrNW_004955496:5,842,600...5,927,885 		JBrowse link
G Pum1 pumilio RNA binding family member 1 involved_in ISO (PMID:20818387), (PMID:22345517) UniProt PMID:20818387 PMID:22345517 NCBI chrNW_004955452:9,487,725...9,623,565
Ensembl chrNW_004955452:9,487,725...9,624,066 		JBrowse link
G Pum2 pumilio RNA binding family member 2 involved_in ISO (PMID:22345517) UniProt PMID:22345517 NCBI chrNW_004955469:2,810,825...2,886,911
Ensembl chrNW_004955469:2,810,573...2,886,611 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:23820254) BHF-UCL PMID:23820254 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687 		JBrowse link
G Tial1 TIA1 cytotoxic granule associated RNA binding protein like 1 involved_in ISO (PMID:33203680) FlyBase PMID:33203680 NCBI chrNW_004955551:370,792...395,836
Ensembl chrNW_004955551:370,792...395,836 		JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) MGI PMID:19898466 MGI:4438512 NCBI chrNW_004955421:97,130...174,326
Ensembl chrNW_004955421:97,772...168,432 		JBrowse link
G Wtip WT1 interacting protein involved_in ISO (PMID:20616046) UniProt PMID:20616046 NCBI chrNW_004955468:4,082,681...4,106,265
Ensembl chrNW_004955468:4,082,681...4,106,265 		JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:15766526) UniProt PMID:15766526 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140 		JBrowse link
positive regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in ISO (PMID:15613540) BHF-UCL PMID:15613540 NCBI chrNW_004955437:9,351,045...9,392,396
Ensembl chrNW_004955437:9,351,045...9,392,396 		JBrowse link
positive regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISO (PMID:32926445) UniProt PMID:32926445 NCBI chrNW_004955431:19,840,827...19,877,930
Ensembl chrNW_004955431:19,840,662...19,877,930 		JBrowse link
regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:25464849) UniProt PMID:25464849 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360 		JBrowse link
G Lin28a lin-28 homolog A acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) MGI PMID:19898466 MGI:4438512 NCBI chrNW_004955452:5,793,583...5,808,662
Ensembl chrNW_004955452:5,793,583...5,808,662 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chrNW_004955506:4,440,555...4,579,642
Ensembl chrNW_004955506:4,440,555...4,559,070 		JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within
involved_in		 ISO (MGI:4438512|PMID:19898466)
(MGI:5448492|PMID:22735451)		 MGI
UniProt		 PMID:19898466 PMID:22735451 MGI:4438512 MGI:5448492 NCBI chrNW_004955421:97,130...174,326
Ensembl chrNW_004955421:97,772...168,432 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12182
    metabolic process 7779
      regulation of metabolic process 5081
        regulation of macromolecule metabolic process 4649
          regulation of gene expression 3553
            regulation of post-transcriptional gene silencing 44
              negative regulation of post-transcriptional gene silencing + 21
              positive regulation of post-transcriptional gene silencing + 26
              regulation of post-transcriptional gene silencing by RNA + 44
Path 2
Term Annotations click to browse term
  biological_process 12182
    metabolic process 7779
      organic substance metabolic process 7486
        macromolecule metabolic process 6438
          regulation of macromolecule metabolic process 4649
            negative regulation of macromolecule metabolic process 2313
              negative regulation of gene expression 900
                post-transcriptional gene silencing 63
                  regulation of post-transcriptional gene silencing 44
                    negative regulation of post-transcriptional gene silencing + 21
                    positive regulation of post-transcriptional gene silencing + 26
                    regulation of post-transcriptional gene silencing by RNA + 44
paths to the root