ONTOLOGY REPORT - ANNOTATIONS
Term: auditory receptor cell stereocilium organization
Accession: GO:0060088
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Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells.
Synonyms: exact_synonym: auditory receptor cell stereocilium organisation
related_synonym: auditory receptor cell stereocilium organization and biogenesis
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Ankrd24
ankyrin repeat domain 24
involved_in
ISO
(PMID:35175278)
RGD
PMID:35175278
NCBI chr 7:8,061,634...8,081,142
Ensembl chr 7:8,061,953...8,081,142
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Atp2b2
ATPase plasma membrane Ca2+ transporting 2
acts_upstream_of_or_within
ISO
MGI:1856799 (PMID:11875276)
RGD
PMID:11875276
NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665
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Cdh23
cadherin-related 23
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856228|MGI:1856681|MGI:1891428|MGI:2154548|MGI:2154549 (PMID:11138008), (PMID:11322776), (PMID:12121736), (PMID:15537665), (PMID:17050716), (PMID:23217710), (PMID:7610888), (PMID:8790740), (PMID:9039475)
Ensembl RGD
PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 PMID:12121736 PMID:15537665 PMID:17050716 PMID:23217710 More...
GO_REF:0000107
NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419
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Clic5
chloride intracellular channel 5
acts_upstream_of_or_within
ISO
MGI:3663254 (PMID:17021174)
RGD
PMID:17021174
NCBI chr 9:24,208,455...24,310,964
Ensembl chr 9:16,710,980...16,813,427
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Clrn1
clarin 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3850171 (PMID:19414487), (PMID:19423712)
Ensembl RGD
PMID:19414487 PMID:19423712
GO_REF:0000107
NCBI chr 2:145,233,941...145,280,855
Ensembl chr 2:143,084,030...143,130,948
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Clrn2
clarin 2
involved_in
ISO
(PMID:33496845)
RGD
PMID:33496845
NCBI chr14:69,868,556...69,878,850
Ensembl chr14:65,656,550...65,666,193
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Grxcr1
glutaredoxin and cysteine rich domain containing 1
acts_upstream_of_or_within
ISO
(PMID:35235570)
RGD
PMID:35235570
NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,004,169...40,126,571
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Grxcr2
glutaredoxin and cysteine rich domain containing 2
acts_upstream_of_or_within
ISO
MGI:2139535|MGI:6281113|MGI:6281114 (PMID:30380417)
RGD
PMID:30380417
NCBI chr18:34,235,734...34,249,139
Ensembl chr18:33,984,689...33,998,094
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Lhfpl5
LHFPL tetraspan subfamily member 5
acts_upstream_of_or_within
ISO
MGI:3055797|MGI:3718054 (PMID:15905332), (PMID:17876667), (PMID:23217710)
RGD
PMID:15905332 PMID:17876667 PMID:23217710
NCBI chr20:6,634,058...6,644,264
Ensembl chr20:6,632,362...6,642,532
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Myo3a
myosin IIIA
involved_in
ISO
MGI:2448580 (PMID:26754646)
RGD
PMID:26754646
NCBI chr17:89,451,567...89,667,654
Ensembl chr17:84,543,552...84,759,042
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Myo3b
myosin IIIB
involved_in
ISO
MGI:2183924 (PMID:26754646)
RGD
PMID:26754646
NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:54,820,251...55,227,373
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Myo7a
myosin VIIA
acts_upstream_of_or_within
ISO
MGI:1860092|MGI:2155422 (PMID:11753415), (PMID:12121736), (PMID:17050716)
RGD
PMID:11753415 PMID:12121736 PMID:17050716
NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157
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Nherf1
NHERF family PDZ scaffold protein 1
acts_upstream_of_or_within
ISO
MGI:3526430 (PMID:24920589)
RGD
PMID:24920589
NCBI chr10:100,902,165...100,919,265
Ensembl chr10:100,403,069...100,420,598
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Pcdh15
protocadherin related 15
acts_upstream_of_or_within
ISO
MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877|MGI:3505691 (PMID:10978835), (PMID:11124469), (PMID:15537665), (PMID:16887306), (PMID:23217710)
RGD
PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710
NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,963,565...15,494,719
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Pdzd7
PDZ domain containing 7
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:4433578 (PMID:24334608)
GO_Central RGD
PMID:24334608
GO_REF:0000033
NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:243,888,281...243,906,839
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Pls1
plastin 1
involved_in
ISO
(PMID:25124451)
RGD
PMID:25124451
NCBI chr 8:105,196,312...105,306,252
Ensembl chr 8:96,317,849...96,385,195
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Rest
RE1-silencing transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:29961578)
UniProt RGD
PMID:29961578
GO_REF:0000024
NCBI chr14:31,213,415...31,233,451
Ensembl chr14:30,862,553...30,894,354
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Ripor2
RHO family interacting cell polarization regulator 2
involved_in
ISO
(PMID:27269051)
RGD
PMID:27269051
NCBI chr17:40,751,771...40,975,611
Ensembl chr17:40,323,867...40,548,092
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Scrib
scribble planar cell polarity protein
acts_upstream_of_or_within
ISO
MGI:2139764 (PMID:20215345)
RGD
PMID:20215345
NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331
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Sec24b
SEC24 homolog B, COPII coat complex component
acts_upstream_of_or_within
ISO
MGI:2145950|MGI:4440621 (PMID:20215345)
RGD
PMID:20215345
NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699
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Sod1
superoxide dismutase 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1857872 (PMID:10464373), (PMID:10466888)
UniProt RGD
PMID:10464373 PMID:10466888
GO_REF:0000024
NCBI chr11:42,942,742...42,948,399
Ensembl chr11:29,456,558...29,462,249
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Strc
stereocilin
acts_upstream_of_or_within involved_in
ISO
MGI:109575|MGI:3818633 (PMID:18849963), (PMID:30801007) (PMID:21165971)
RGD
PMID:18849963 PMID:21165971 PMID:30801007
NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:108,335,747...108,354,134
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Tecta
tectorin alpha
acts_upstream_of_or_within
ISO
MGI:2153816 (PMID:30801007)
RGD
PMID:30801007
NCBI chr 8:51,604,974...51,676,745
Ensembl chr 8:42,707,962...42,779,707
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Tprn
taperin
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2685697 (PMID:30380417)
GO_Central RGD
PMID:30380417
GO_REF:0000033
NCBI chr 3:28,474,322...28,481,800
Ensembl chr 3:8,075,137...8,083,642
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Triobp
TRIO and F-actin binding protein
acts_upstream_of_or_within
ISO
MGI:4881773 (PMID:20510926)
RGD
PMID:20510926
NCBI chr 7:112,386,371...112,452,130
Ensembl chr 7:110,506,248...110,562,474
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Whrn
whirlin
involved_in acts_upstream_of_or_within
IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 MGI:4432119 (PMID:27117407)
Ensembl GO_Central RGD
PMID:27117407
GO_REF:0000033 GO_REF:0000107
NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223
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