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ONTOLOGY REPORT - ANNOTATIONS


Term:auditory receptor cell stereocilium organization
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Accession:GO:0060088 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells.
Synonyms:exact_synonym: auditory receptor cell stereocilium organisation
 related_synonym: auditory receptor cell stereocilium organization and biogenesis



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auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD24 ankyrin repeat domain 24 involved_in ISO (PMID:35175278) UniProt PMID:35175278 NCBI chr19:3,206,152...3,246,886 JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chr 3:10,260,556...10,643,346
Ensembl chr 3:10,611,619...10,738,006
JBrowse link
G CLIC5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (PMID:17021174) MGI PMID:17021174 NCBI chr 6:45,474,797...45,592,407
Ensembl chr 6:46,753,013...46,934,100
JBrowse link
G CLRN1 clarin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19414487), (PMID:19423712) Ensembl
MGI
PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chr 3:147,954,124...148,000,895
Ensembl chr 3:155,526,011...155,573,684
JBrowse link
G CLRN2 clarin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:11,933,869...11,948,049
Ensembl chr 4:17,228,544...17,240,743
JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO (PMID:35235570) MGI PMID:35235570 NCBI chr 4:37,214,515...37,352,195
Ensembl chr 4:43,063,313...43,200,436
JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:30380417) Ensembl
MGI
PMID:30380417 GO_REF:0000107 NCBI chr 5:141,309,249...141,322,523
Ensembl chr 5:147,324,358...147,337,633
JBrowse link
G LHFPL5 LHFPL tetraspan subfamily member 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17876667), (PMID:23217710)
(PMID:15905332)
Ensembl
MGI
PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 NCBI chr 6:35,367,304...35,389,595
Ensembl chr 6:36,569,008...36,589,102
JBrowse link
G LOC100980308 tubulin-specific chaperone cofactor E-like protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:115,867,514...116,038,193
Ensembl chr11:119,873,943...119,961,175
Ensembl chr11:119,873,943...119,961,175
JBrowse link
G LOC100983880 cadherin-23 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11138008), (PMID:17050716), (PMID:23217710)
(PMID:7610888), (PMID:8790740), (PMID:9039475)
(PMID:12121736)
(PMID:15537665)
(PMID:11322776)
Ensembl
MGI
PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... GO_REF:0000107 NCBI chr10:67,866,979...68,286,008
Ensembl chr10:70,434,801...70,810,240
JBrowse link
G LOC103785466 stereocilin acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:18849963)
(PMID:30801007)
MGI
Ensembl
PMID:18849963 PMID:30801007 GO_REF:0000107 NCBI chr15:22,660,952...22,706,416
Ensembl chr15:40,740,387...40,757,999
JBrowse link
G MYO3A myosin IIIA involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr10:26,104,588...26,389,942
Ensembl chr10:26,469,742...26,754,989
JBrowse link
G MYO3B myosin IIIB involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr2B:57,458,046...57,940,039
Ensembl chr2B:174,975,796...175,398,203
JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17050716)
(PMID:11753415)
(PMID:12121736)
Ensembl
MGI
PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 NCBI chr11:72,187,024...72,265,931
Ensembl chr11:75,834,185...75,907,752
JBrowse link
G NHERF1 NHERF family PDZ scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24920589) Ensembl
MGI
PMID:24920589 GO_REF:0000107 NCBI chr17:68,694,468...68,715,157
Ensembl chr17:74,250,406...74,271,234
JBrowse link
G PCDH15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:15537665)
(PMID:23217710)
(PMID:16887306)
(PMID:10978835)
(PMID:11124469)
MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chr10:50,452,290...52,236,538
Ensembl chr10:52,666,969...53,536,611
JBrowse link
G PDZD7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24334608) Ensembl
MGI
TreeGrafter
PMID:24334608 GO_REF:0000107 GO_REF:0000118 NCBI chr10:97,608,969...97,632,508
Ensembl chr10:101,085,370...101,107,034
JBrowse link
G PLS1 plastin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:139,629,825...139,747,080
Ensembl chr 3:147,289,205...147,338,600
JBrowse link
G REST RE1 silencing transcription factor involved_in ISO (PMID:29961578) UniProt PMID:29961578 NCBI chr 4:66,984,466...67,012,301
Ensembl chr 4:73,526,085...73,582,242
JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:24,642,239...24,768,074
Ensembl chr 6:24,973,412...25,204,745
JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 NCBI chr 8:140,544,797...140,571,078
Ensembl chr 8:143,557,722...143,582,353
JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 NCBI chr 4:101,937,119...102,043,038
Ensembl chr 4:112,534,779...112,628,065
JBrowse link
G SOD1 superoxide dismutase 1 acts_upstream_of_or_within ISO (PMID:10464373), (PMID:10466888) MGI PMID:10464373 PMID:10466888 NCBI chr21:18,029,831...18,037,526 JBrowse link
G STRC stereocilin involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:22,562,313...22,633,064
Ensembl chr15:40,769,539...40,795,723
Ensembl chr15:40,769,539...40,795,723
JBrowse link
G TPRN taperin acts_upstream_of_or_within ISO (PMID:30380417) MGI PMID:30380417 NCBI chr 9:108,251,235...108,261,541 JBrowse link
G TRIOBP TRIO and F-actin binding protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20510926) Ensembl
MGI
PMID:20510926 GO_REF:0000107 NCBI chr22:18,662,794...18,693,138
Ensembl chr22:36,451,860...36,522,391
JBrowse link
G WHRN whirlin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27117407) Ensembl
TreeGrafter
MGI
PMID:27117407 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:85,500,222...85,604,417
Ensembl chr 9:113,863,872...113,966,758
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19317
    developmental process 6680
      anatomical structure morphogenesis 2861
        embryonic morphogenesis 682
          auditory receptor cell morphogenesis 31
            auditory receptor cell stereocilium organization 27
Path 2
Term Annotations click to browse term
  biological_process 19317
    developmental process 6680
      anatomical structure development 6261
        multicellular organism development 5028
          system development 4369
            nervous system development 2737
              neurogenesis 2028
                generation of neurons 1753
                  neuron differentiation 1668
                    mechanoreceptor differentiation 103
                      inner ear receptor cell differentiation 96
                        inner ear receptor cell development 72
                          auditory receptor cell development 40
                            auditory receptor cell morphogenesis 31
                              auditory receptor cell stereocilium organization 27
paths to the root