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ONTOLOGY REPORT - ANNOTATIONS

Term:retina development in camera-type eye
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Accession:GO:0060041 term browser browse the term
Definition:The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
Synonyms:exact_synonym: retina development in camera-style eye
 related_synonym: retinal development
 alt_id: GO:0002073


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retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase acts_upstream_of_or_within IMP (PMID:15579149) MGI PMID:15579149 NCBI chr 5:137,286,516...137,292,728
Ensembl chr 5:137,285,781...137,292,728 		JBrowse link
G Actb actin, beta ISO RGD PMID:22916200 RGD:9587758 NCBI chr 5:142,888,870...142,892,509
Ensembl chr 5:142,888,870...142,892,509 		JBrowse link
G Agtpbp1 ATP/GTP binding protein 1 acts_upstream_of_or_within IMP (PMID:24791901)
(PMID:21052544)		 MGI PMID:21052544 PMID:24791901 NCBI chr13:59,597,348...59,705,184
Ensembl chr13:59,593,556...59,733,041 		JBrowse link
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within IMP (PMID:20592197) MGI PMID:20592197 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated acts_upstream_of_or_within IMP (PMID:31302159) MGI PMID:31302159 NCBI chr 6:85,564,482...85,698,973
Ensembl chr 6:85,564,513...85,679,735 		JBrowse link
G Apc APC, WNT signaling pathway regulator acts_upstream_of_or_within IMP (PMID:10982921) MGI PMID:10982921 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Arsg arylsulfatase G acts_upstream_of_or_within IMP (PMID:26975023) MGI PMID:26975023 NCBI chr11:109,364,159...109,464,156
Ensembl chr11:109,364,200...109,464,156 		JBrowse link
G Bax BCL2-associated X protein acts_upstream_of_or_within IMP (PMID:9699561) MGI PMID:9699561 NCBI chr 7:45,111,124...45,116,332
Ensembl chr 7:45,111,121...45,116,322 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within IMP (PMID:31302159) MGI PMID:31302159 NCBI chr19:4,936,906...4,956,681
Ensembl chr19:4,936,906...4,956,656 		JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IMP (PMID:31302159), (PMID:36700052) MGI PMID:31302159 PMID:36700052 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO RGD PMID:17069773 RGD:2289001 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor, type 1B acts_upstream_of_or_within IMP (PMID:12654290) MGI PMID:12654290 NCBI chr 3:141,540,230...141,875,335
Ensembl chr 3:141,542,897...141,875,186 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO RGD PMID:10482474 RGD:5129487 NCBI chr 1:59,802,721...59,917,240
Ensembl chr 1:59,802,559...59,918,173 		JBrowse link
G C3 complement component 3 acts_upstream_of_or_within IGI (PMID:28057640) MGI PMID:28057640 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136 		JBrowse link
G Cacna1f calcium channel, voltage-dependent, alpha 1F subunit acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr  X:7,473,342...7,501,435
Ensembl chr  X:7,473,322...7,501,435 		JBrowse link
G Calb1 calbindin 1 involved_in IEP (MGI:1353814|PMID:10741426) UniProt PMID:10741426 MGI:1353814 NCBI chr 4:15,881,264...15,906,709
Ensembl chr 4:15,881,264...15,908,064 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within IMP (PMID:21052544), (PMID:31302159) MGI PMID:21052544 PMID:31302159 NCBI chr10:100,323,410...100,409,527
Ensembl chr10:100,323,420...100,410,702 		JBrowse link
G Cfd complement factor D acts_upstream_of_or_within IGI (PMID:28057640) MGI PMID:28057640 NCBI chr10:79,726,687...79,728,489
Ensembl chr10:79,726,687...79,728,489 		JBrowse link
G Cfh complement component factor h acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 IGI
IMP		 (PMID:28057640)
(PMID:30705315)
(PMID:17921253), (PMID:28057640)		 MGI PMID:17921253 PMID:28057640 PMID:30705315 NCBI chr 1:140,013,593...140,111,149
Ensembl chr 1:140,012,446...140,111,502 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Clcn2 chloride channel, voltage-sensitive 2 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr16:20,521,185...20,536,496
Ensembl chr16:20,521,714...20,536,496 		JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within IMP (PMID:15565184)
(PMID:21052544)		 MGI PMID:15565184 PMID:21052544 NCBI chr 8:14,931,335...14,951,720
Ensembl chr 8:14,931,335...14,951,720 		JBrowse link
G Cnga3 cyclic nucleotide gated channel alpha 3 acts_upstream_of_or_within IGI (PMID:21124780) MGI PMID:21124780 NCBI chr 1:37,257,317...37,302,465
Ensembl chr 1:37,253,515...37,302,465 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (PMID:22447858), (PMID:25147295) MGI PMID:22447858 PMID:25147295 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Crx cone-rod homeobox acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 7:15,599,872...15,613,880
Ensembl chr 7:15,599,872...15,613,893 		JBrowse link
G Dcx doublecortin involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr  X:142,638,838...142,716,392
Ensembl chr  X:142,638,838...142,716,307 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134 		JBrowse link
G Dram2 DNA-damage regulated autophagy modulator 2 acts_upstream_of_or_within IMP (PMID:37691820) MGI PMID:37691820 NCBI chr 3:106,455,114...106,482,657
Ensembl chr 3:106,455,114...106,483,206 		JBrowse link
G Drd4 dopamine receptor D4 ISO RGD PMID:18778704 RGD:7175073 NCBI chr 7:140,871,931...140,874,868
Ensembl chr 7:140,871,919...140,876,377 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 ISO RGD PMID:23954924 RGD:11251759 NCBI chr13:45,075,552...45,155,614
Ensembl chr13:45,075,551...45,155,623 		JBrowse link
G Gdnf glial cell line derived neurotrophic factor ISO RGD PMID:16650834 RGD:2324945 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IGI
IMP		 (PMID:21124780)
(PMID:21052544)		 MGI PMID:21052544 PMID:21124780 NCBI chr 9:107,551,636...107,556,833
Ensembl chr 9:107,551,673...107,556,911 		JBrowse link
G Gnb1 guanine nucleotide binding protein (G protein), beta 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 4:155,575,514...155,643,726
Ensembl chr 4:155,575,818...155,643,726 		JBrowse link
G Grm6 glutamate receptor, metabotropic 6 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr11:50,741,205...50,757,035
Ensembl chr11:50,741,512...50,757,035 		JBrowse link
G Grn granulin acts_upstream_of_or_within IMP (PMID:28728022) MGI PMID:28728022 NCBI chr11:102,321,333...102,327,635
Ensembl chr11:102,321,141...102,327,874 		JBrowse link
G Hpca hippocalcin ISO RGD PMID:7789406 RGD:9686441 NCBI chr 4:129,005,363...129,019,712
Ensembl chr 4:129,005,363...129,015,829 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr19:42,743,629...42,770,013
Ensembl chr19:42,743,544...42,768,417 		JBrowse link
G Il4 interleukin 4 ISO RGD PMID:23070471 RGD:7829830 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 6:29,200,435...29,216,363
Ensembl chr 6:29,200,433...29,216,363 		JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 9:108,437,635...108,442,776
Ensembl chr 9:108,437,485...108,442,783 		JBrowse link
G Jmjd6 jumonji domain containing 6 acts_upstream_of_or_within IMP (PMID:15345036) MGI PMID:15345036 NCBI chr11:116,728,258...116,734,593
Ensembl chr11:116,728,258...116,734,275 		JBrowse link
G Lama1 laminin, alpha 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr17:68,004,129...68,129,640
Ensembl chr17:68,004,254...68,129,642 		JBrowse link
G Lamb2 laminin, beta 2 acts_upstream_of_or_within IGI (PMID:19907020) MGI PMID:19907020 NCBI chr 9:108,357,080...108,367,729
Ensembl chr 9:108,356,935...108,367,729 		JBrowse link
G Lamc3 laminin gamma 3 acts_upstream_of_or_within IGI (PMID:19907020) MGI PMID:19907020 NCBI chr 2:31,777,293...31,839,095
Ensembl chr 2:31,777,303...31,836,551 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within IMP (PMID:16111892) MGI PMID:16111892 NCBI chr 8:73,541,227...74,080,164
Ensembl chr 8:73,541,227...74,080,168 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IEP (MGI:1353814|PMID:10741426) UniProt PMID:10741426 MGI:1353814 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Lhx2 LIM homeobox protein 2 acts_upstream_of_or_within IGI (PMID:19146846) MGI PMID:19146846 NCBI chr 2:38,229,282...38,259,747
Ensembl chr 2:38,229,293...38,259,745 		JBrowse link
G Lif leukemia inhibitory factor involved_in ISO RGD
MGI		 PMID:16643897 GO_REF:0000096 MGI:4417868 RGD:2326157 NCBI chr11:4,207,587...4,222,514
Ensembl chr11:4,207,557...4,222,514 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr13:73,615,332...73,664,539
Ensembl chr13:73,615,316...73,664,541 		JBrowse link
G Max Max protein ISO RGD PMID:14603520 RGD:2316820 NCBI chr12:76,984,045...77,009,123
Ensembl chr12:76,984,043...77,008,975 		JBrowse link
G Mdm1 MDM1 nuclear protein acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:21052544) MGI
GO_Central		 PMID:21052544 GO_REF:0000033 NCBI chr10:117,977,446...118,004,904
Ensembl chr10:117,977,716...118,004,902 		JBrowse link
G Mertk MER proto-oncogene tyrosine kinase acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 2:128,540,836...128,645,082
Ensembl chr 2:128,540,876...128,644,814 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 9:44,013,067...44,020,484
Ensembl chr 9:44,013,026...44,020,484 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within IMP (PMID:27654426) MGI PMID:27654426 NCBI chr 3:40,772,500...40,801,322
Ensembl chr 3:40,772,538...40,801,321 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within IGI (PMID:23341629)
(PMID:28819115)		 MGI PMID:23341629 PMID:28819115 NCBI chr 6:30,165,917...30,165,991
Ensembl chr 6:30,165,917...30,165,991 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within IGI (PMID:23341629)
(PMID:28819115)		 MGI PMID:23341629 PMID:28819115 NCBI chr 6:30,169,667...30,169,736
Ensembl chr 6:30,169,667...30,169,736 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within IGI (PMID:23341629)
(PMID:28819115)		 MGI PMID:23341629 PMID:28819115 NCBI chr 6:30,169,445...30,169,550
Ensembl chr 6:30,169,445...30,169,550 		JBrowse link
G Musk muscle, skeletal, receptor tyrosine kinase ISO RGD PMID:16899069 RGD:2317091 NCBI chr 4:58,285,742...58,377,848
Ensembl chr 4:58,285,962...58,374,303 		JBrowse link
G Myh10 myosin, heavy polypeptide 10, non-muscle acts_upstream_of_or_within IMP (PMID:11283949), (PMID:9356462) MGI PMID:9356462 PMID:11283949 NCBI chr11:68,581,228...68,707,451
Ensembl chr11:68,582,385...68,707,458 		JBrowse link
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) acts_upstream_of_or_within IMP (PMID:26607664) MGI PMID:26607664 NCBI chr11:100,960,918...100,968,483
Ensembl chr11:100,960,838...100,968,498 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:9071226) MGI PMID:9071226 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IMP (PMID:15728677) MGI PMID:15728677 NCBI chr 9:43,655,251...43,718,758
Ensembl chr 9:43,655,281...43,743,955 		JBrowse link
G Neurod4 neurogenic differentiation 4 ISO RGD PMID:15345241 RGD:2311603 NCBI chr10:130,104,021...130,116,123
Ensembl chr10:130,104,021...130,116,109 		JBrowse link
G Nfia nuclear factor I/A acts_upstream_of_or_within IMP (PMID:31128945) MGI PMID:31128945 NCBI chr 4:97,469,534...98,007,113
Ensembl chr 4:97,660,971...98,007,111 		JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within IMP (PMID:31128945) MGI PMID:31128945 NCBI chr 4:82,208,410...82,424,988
Ensembl chr 4:82,208,410...82,623,987 		JBrowse link
G Nfix nuclear factor I/X acts_upstream_of_or_within IMP (PMID:31128945) MGI PMID:31128945 NCBI chr 8:85,431,341...85,527,086
Ensembl chr 8:85,426,505...85,526,973 		JBrowse link
G Nos3 nitric oxide synthase 3, endothelial cell ISO RGD PMID:16639026 RGD:7771562 NCBI chr 5:24,569,772...24,589,472
Ensembl chr 5:24,569,808...24,589,472 		JBrowse link
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) involved_in IMP (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chr 2:127,582,652...127,630,833
Ensembl chr 2:127,582,652...127,630,817 		JBrowse link
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 4:152,561,163...152,647,641
Ensembl chr 4:152,561,163...152,647,640 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within IMP (PMID:11997145)
(PMID:16702404)		 MGI PMID:11997145 PMID:16702404 NCBI chr10:42,437,959...42,459,721
Ensembl chr10:42,437,959...42,459,628 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within IMP (PMID:12407160)
(PMID:21052544)		 MGI PMID:12407160 PMID:21052544 NCBI chr 9:59,850,054...59,868,117
Ensembl chr 9:59,850,054...59,867,942 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 ISO RGD PMID:22714110 RGD:124713571 NCBI chr 2:56,996,845...57,014,152
Ensembl chr 2:56,996,842...57,014,015 		JBrowse link
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 acts_upstream_of_or_within IMP (PMID:25542970) MGI PMID:25542970 NCBI chr13:58,954,363...59,281,782
Ensembl chr13:58,954,383...59,281,784 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase ISO RGD PMID:15505078 RGD:1547836 NCBI chr16:29,398,099...29,481,924
Ensembl chr16:29,398,152...29,473,702 		JBrowse link
G Opn4 opsin 4 (melanopsin) acts_upstream_of_or_within IGI (PMID:21124780) MGI PMID:21124780 NCBI chr14:34,312,575...34,322,099
Ensembl chr14:34,312,575...34,322,099 		JBrowse link
G Pax4 paired box 4 ISO RGD PMID:19012751 RGD:2311636 NCBI chr 6:28,442,333...28,449,339
Ensembl chr 6:28,442,333...28,449,352 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IGI		 (PMID:19146846) RGD
MGI		 PMID:19012751 PMID:19146846 RGD:2311636 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pde6a phosphodiesterase 6A, cGMP-specific, rod, alpha involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:21052544) GO_Central
MGI		 PMID:21052544 GO_REF:0000033 NCBI chr18:61,353,546...61,426,698
Ensembl chr18:61,353,387...61,422,995 		JBrowse link
G Pde6b phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:21052544) GO_Central
MGI		 PMID:21052544 GO_REF:0000033 NCBI chr 5:108,536,239...108,579,609
Ensembl chr 5:108,536,257...108,580,263 		JBrowse link
G Pdgfb platelet derived growth factor, B polypeptide acts_upstream_of_or_within IMP (PMID:25224828) MGI PMID:25224828 NCBI chr15:79,880,066...79,899,178
Ensembl chr15:79,880,075...79,899,178 		JBrowse link
G Pfdn5 prefoldin 5 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr15:102,234,551...102,239,925
Ensembl chr15:102,234,551...102,240,308 		JBrowse link
G Pou4f2 POU domain, class 4, transcription factor 2 acts_upstream_of_or_within IMP (PMID:9630743)
(PMID:8637595)		 MGI PMID:8637595 PMID:9630743 NCBI chr 8:79,159,638...79,163,276
Ensembl chr 8:79,159,639...79,163,274 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within IMP
IGI		 (PMID:15964665)
(PMID:28053051)
(PMID:21052544)		 MGI PMID:15964665 PMID:21052544 PMID:28053051 NCBI chr17:47,221,404...47,235,859
Ensembl chr17:47,221,385...47,235,859 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:8453763 PMID:16914133 RGD:9831439 RGD:9831456 NCBI chr 6:36,691,863...36,787,114
Ensembl chr 6:36,691,864...36,787,155 		JBrowse link
G Rbp4 retinol binding protein 4, plasma acts_upstream_of_or_within IMP (PMID:11562477) MGI PMID:11562477 NCBI chr19:38,105,068...38,113,769
Ensembl chr19:38,105,077...38,113,729 		JBrowse link
G Rd3 retinal degeneration 3 involved_in
acts_upstream_of_or_within		 IMP
IBA		 (MGI:52860|PMID:8486383)
(PMID:21052544)		 UniProt
MGI
GO_Central		 PMID:8486383 PMID:21052544 GO_REF:0000033 MGI:52860 NCBI chr 1:191,688,574...191,725,497
Ensembl chr 1:191,709,331...191,720,244 		JBrowse link
G Ret ret proto-oncogene ISO RGD PMID:16650834 RGD:2324945 NCBI chr 6:118,128,709...118,174,705
Ensembl chr 6:118,128,706...118,174,679 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 6:115,903,741...115,916,999
Ensembl chr 6:115,908,709...115,916,997 		JBrowse link
G Rnpep arginyl aminopeptidase (aminopeptidase B) ISO RGD PMID:15500823 RGD:2325937 NCBI chr 1:135,190,447...135,211,765
Ensembl chr 1:135,190,450...135,211,822 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IGI
IMP		 (PMID:28053051) MGI PMID:28053051 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:21052544) MGI
GO_Central		 PMID:21052544 GO_REF:0000033 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Rp1l1 retinitis pigmentosa 1 homolog like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:64,229,880...64,270,955
Ensembl chr14:64,229,955...64,272,474 		JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr14:52,341,698...52,398,796
Ensembl chr14:52,348,161...52,401,003 		JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within IMP (PMID:10049578), (PMID:9331275) MGI PMID:9331275 PMID:10049578 NCBI chr16:55,786,638...55,791,800
Ensembl chr16:55,786,638...55,791,798 		JBrowse link
G Rrm1 ribonucleotide reductase M1 ISO RGD PMID:2647502 RGD:5133699 NCBI chr 7:102,090,902...102,118,978
Ensembl chr 7:102,090,902...102,118,978 		JBrowse link
G Scaper S phase cyclin A-associated protein in the ER acts_upstream_of_or_within ISO (PMID:28794130) MGI PMID:28794130 NCBI chr 9:55,457,163...55,845,505
Ensembl chr 9:55,457,163...55,845,403 		JBrowse link
G Serpinf1 serine (or cysteine) peptidase inhibitor, clade F, member 1 ISO RGD PMID:21738387 RGD:8655555 NCBI chr11:75,300,855...75,313,449
Ensembl chr11:75,300,595...75,313,527 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (PMID:17003410) MGI PMID:17003410 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Slc1a1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 involved_in IMP (PMID:28703795) MGI PMID:28703795 NCBI chr19:28,812,535...28,891,360
Ensembl chr19:28,812,449...28,891,360 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within IMP (PMID:37862028) MGI PMID:37862028 NCBI chr 8:120,206,313...120,228,503
Ensembl chr 8:120,206,341...120,228,437 		JBrowse link
G Slc4a5 solute carrier family 4, sodium bicarbonate cotransporter, member 5 acts_upstream_of_or_within IMP (PMID:21705333) MGI PMID:21705333 NCBI chr 6:83,184,561...83,281,927
Ensembl chr 6:83,196,810...83,281,927 		JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 acts_upstream_of_or_within IGI (PMID:19490914) MGI PMID:19490914 NCBI chr17:25,784,865...25,789,666
Ensembl chr17:25,784,634...25,789,726 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IGI (PMID:19490914) MGI PMID:19490914 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (PMID:20159594) MGI PMID:20159594 NCBI chr10:55,890,389...56,106,495
Ensembl chr10:55,890,389...56,104,785 		JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 acts_upstream_of_or_within IMP (PMID:20711468) MGI PMID:20711468 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr13:93,282,363...93,330,662
Ensembl chr13:93,282,790...93,328,893 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IDA (PMID:18973577) MGI PMID:18973577 NCBI chr17:71,151,200...71,160,527
Ensembl chr17:71,151,200...71,160,541 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within IDA (PMID:18926818) MGI PMID:18926818 NCBI chr 2:156,681,737...156,697,490
Ensembl chr 2:156,681,927...156,697,490 		JBrowse link
G Ttll5 tubulin tyrosine ligase-like family, member 5 acts_upstream_of_or_within ISO (PMID:24791901) MGI PMID:24791901 NCBI chr12:85,871,417...86,100,534
Ensembl chr12:85,871,433...86,108,667 		JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 7:108,610,087...108,633,666
Ensembl chr 7:108,549,545...108,633,667 		JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr17:28,570,489...28,584,190
Ensembl chr17:28,570,489...28,584,196 		JBrowse link
G Uchl3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr14:101,891,387...101,933,561
Ensembl chr14:101,891,403...101,933,561 		JBrowse link
G Ush2a usherin ISO RGD PMID:12160733 RGD:634438 NCBI chr 1:187,995,035...188,697,694
Ensembl chr 1:187,994,220...188,697,238 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IDA (PMID:10595508) MGI PMID:10595508 NCBI chr 6:83,688,221...83,715,295
Ensembl chr 6:83,688,246...83,715,295 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr 2:146,854,672...146,919,922
Ensembl chr 2:146,854,916...146,919,920 		JBrowse link
G Zfp513 zinc finger protein 513 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:31,356,325...31,360,007
Ensembl chr 5:31,356,325...31,359,647 		JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH like homeobox 2 acts_upstream_of_or_within IDA (PMID:14998930) MGI PMID:14998930 NCBI chr 5:106,600,389...106,606,032
Ensembl chr 5:106,600,389...106,606,032 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within IMP (PMID:17092954) MGI PMID:17092954 NCBI chr 3:18,108,489...18,111,678
Ensembl chr 3:18,108,338...18,111,681 		JBrowse link
G Foxn4 forkhead box N4 acts_upstream_of_or_within IMP (PMID:15363391) MGI PMID:15363391 NCBI chr 5:114,392,225...114,412,486
Ensembl chr 5:114,392,225...114,411,868 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of IDA (PMID:15976303) MGI PMID:15976303 NCBI chr10:128,716,393...128,727,587
Ensembl chr10:128,718,164...128,727,587 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of IMP (PMID:16038893) MGI PMID:16038893 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IDA (PMID:25654255) MGI PMID:25654255 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Miat myocardial infarction associated transcript (non-protein coding) acts_upstream_of_or_within IMP (PMID:20459797) MGI PMID:20459797 NCBI chr 5:112,361,094...112,376,814
Ensembl chr 5:112,361,094...112,377,261 		JBrowse link
G Neurod1 neurogenic differentiation 1 involved_in IDA (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chr 2:79,282,981...79,286,980
Ensembl chr 2:79,282,865...79,287,095 		JBrowse link
G Neurod4 neurogenic differentiation 4 involved_in IDA (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chr10:130,104,021...130,116,123
Ensembl chr10:130,104,021...130,116,109 		JBrowse link
G Ptf1a pancreas specific transcription factor, 1a involved_in
acts_upstream_of_or_within		 IMP (MGI:3691257|PMID:17075007)
(PMID:17301087)		 UniProt
MGI		 PMID:17075007 PMID:17301087 MGI:3691257 NCBI chr 2:19,450,474...19,452,312
Ensembl chr 2:19,450,474...19,452,312 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of IDA (PMID:18973577) MGI PMID:18973577 NCBI chr17:71,151,200...71,160,527
Ensembl chr17:71,151,200...71,160,541 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of IDA (PMID:18926818) MGI PMID:18926818 NCBI chr 2:156,681,737...156,697,490
Ensembl chr 2:156,681,927...156,697,490 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 involved_in IMP
IBA
ISO		 (MGI:3838023|PMID:19228982) UniProt
GO_Central
MGI		 PMID:19228982 GO_REF:0000033 GO_REF:0000119 MGI:3838023 MGI:4834177 NCBI chr 5:44,150,963...44,260,850
Ensembl chr 5:44,150,962...44,259,374 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IMP (PMID:20300562) MGI PMID:20300562 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in IDA (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr11:113,667,200...113,957,855
Ensembl chr11:113,667,200...113,957,872 		JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 acts_upstream_of_or_within IMP (PMID:12808454) MGI PMID:12808454 NCBI chr14:7,669,819...7,766,808
Ensembl chr14:7,669,823...7,767,484 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IMP (PMID:21646512) MGI PMID:21646512 NCBI chr12:98,886,796...98,949,509
Ensembl chr12:98,886,833...98,949,497 		JBrowse link
G Vax2os ventral anterior homeobox 2, opposite strand acts_upstream_of_or_within IMP (PMID:22128341) MGI PMID:22128341 NCBI chr 6:83,669,786...83,689,183
Ensembl chr 6:83,669,788...83,689,183 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:18582859) MGI PMID:18582859 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IMP (PMID:29518352)
(PMID:23580486)		 MGI PMID:23580486 PMID:29518352 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) acts_upstream_of_or_within IMP (PMID:26607664) MGI PMID:26607664 NCBI chr11:100,960,918...100,968,483
Ensembl chr11:100,960,838...100,968,498 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:9071226) MGI PMID:9071226 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion molecule-related/down-regulated by oncogenes acts_upstream_of_or_within IMP (PMID:19754878) MGI PMID:19754878 NCBI chr 9:35,332,836...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 3:103,647,131...103,699,210
Ensembl chr 3:103,647,131...103,698,879 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IMP (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (PMID:19653321) MGI PMID:19653321 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Prox1 prospero homeobox 1 involved_in IEP (MGI:2658694|PMID:12692551) BHF-UCL PMID:12692551 MGI:2658694 NCBI chr 1:189,850,232...189,903,024
Ensembl chr 1:189,850,232...189,902,911 		JBrowse link
G Rbp4 retinol binding protein 4, plasma involved_in IMP (MGI:1344892|PMID:10469643) BHF-UCL PMID:10469643 MGI:1344892 NCBI chr19:38,105,068...38,113,769
Ensembl chr19:38,105,077...38,113,729 		JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IMP (PMID:25654255) MGI PMID:25654255 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within IDA (PMID:15976303) MGI PMID:15976303 NCBI chr10:128,716,393...128,727,587
Ensembl chr10:128,718,164...128,727,587 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IMP (PMID:16038893) MGI PMID:16038893 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Pou4f2 POU domain, class 4, transcription factor 2 involved_in IMP (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr 8:79,159,638...79,163,276
Ensembl chr 8:79,159,639...79,163,274 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IMP (PMID:25654255) MGI PMID:25654255 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346 		JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chr 3:32,762,695...32,781,122
Ensembl chr 3:32,760,447...32,781,122 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within IMP
ISO		 (PMID:21441919) MGI PMID:21441919 GO_REF:0000008 NCBI chr10:62,935,564...62,937,059
Ensembl chr10:62,935,430...62,937,058 		JBrowse link
G Atp2b1 ATPase, Ca++ transporting, plasma membrane 1 ISO RGD PMID:16079002 RGD:2317729 NCBI chr10:98,750,243...98,862,005
Ensembl chr10:98,750,268...98,862,005 		JBrowse link
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 ISO RGD PMID:16079002 RGD:2317729 NCBI chr 6:113,720,803...114,019,574
Ensembl chr 6:113,720,792...114,019,574 		JBrowse link
G Atp2b3 ATPase, Ca++ transporting, plasma membrane 3 ISO RGD PMID:16079002 RGD:2317729 NCBI chr  X:72,546,356...72,632,267
Ensembl chr  X:72,546,692...72,614,611 		JBrowse link
G Atp2b4 ATPase, Ca++ transporting, plasma membrane 4 ISO RGD PMID:16079002 RGD:2317729 NCBI chr 1:133,630,416...133,728,755
Ensembl chr 1:133,627,195...133,728,779 		JBrowse link
G Bsg basigin involved_in IMP (MGI:1888850|PMID:10967074), (MGI:1932603|PMID:11273674), (MGI:3610672|PMID:11853760) UniProt PMID:10967074 PMID:11273674 PMID:11853760 MGI:1888850 MGI:1932603 MGI:3610672 NCBI chr10:79,540,192...79,547,813
Ensembl chr10:79,540,325...79,547,803 		JBrowse link
G Casp2 caspase 2 ISO RGD PMID:9809666 RGD:4107085 NCBI chr 6:42,241,942...42,259,442
Ensembl chr 6:42,241,919...42,259,442 		JBrowse link
G Gpm6a glycoprotein m6a involved_in IDA (MGI:3811956|PMID:18776950) UniProt PMID:18776950 MGI:3811956 NCBI chr 8:55,232,469...55,513,913
Ensembl chr 8:55,407,878...55,513,906 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP
IDA		 (PMID:15716406) MGI PMID:15716406 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Optn optineurin ISO RGD PMID:17687037 RGD:7800681 NCBI chr 2:5,023,902...5,069,210
Ensembl chr 2:5,025,453...5,068,862 		JBrowse link
G Psen1 presenilin 1 ISO RGD PMID:12401445 RGD:729595 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Rpe65 retinal pigment epithelium 65 involved_in ISO RGD
MGI		 PMID:2631392 GO_REF:0000096 MGI:4417868 RGD:9585660 NCBI chr 3:159,304,712...159,330,944
Ensembl chr 3:159,304,812...159,330,958 		JBrowse link
G Slc17a6 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 ISO RGD PMID:18482716 RGD:9999162 NCBI chr 7:51,271,578...51,320,874
Ensembl chr 7:51,271,754...51,320,867 		JBrowse link
G Slc17a7 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 ISO RGD PMID:18482716 RGD:9999162 NCBI chr 7:44,813,345...44,825,563
Ensembl chr 7:44,813,373...44,825,566 		JBrowse link
G Slc17a8 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 ISO RGD PMID:18482716 RGD:9999162 NCBI chr10:89,409,882...89,457,111
Ensembl chr10:89,409,882...89,457,115 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in IEP (MGI:3809321|PMID:18816825) BHF-UCL PMID:18816825 MGI:3809321 NCBI chr 5:24,797,620...24,829,649
Ensembl chr 5:24,795,816...24,829,409 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in IMP (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr 2:71,358,457...71,364,325
Ensembl chr 2:71,358,457...71,364,325 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IMP (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IDA (PMID:18973577) MGI PMID:18973577 NCBI chr17:71,151,200...71,160,527
Ensembl chr17:71,151,200...71,160,541 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within IDA (PMID:18926818) MGI PMID:18926818 NCBI chr 2:156,681,737...156,697,490
Ensembl chr 2:156,681,927...156,697,490 		JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated involved_in
acts_upstream_of_or_within		 IMP (PMID:12915475)
(PMID:15316081), (PMID:16885194)		 MGI PMID:12915475 PMID:15316081 PMID:16885194 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Dscam DS cell adhesion molecule acts_upstream_of_or_within IMP (PMID:18216855) MGI PMID:18216855 NCBI chr16:96,388,652...96,971,935
Ensembl chr16:96,392,040...96,971,952 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within IMP (PMID:10097103) MGI PMID:10097103 NCBI chr 8:13,455,081...13,471,951
Ensembl chr 8:13,455,081...13,471,951 		JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in IMP (MGI:5314555|PMID:22323600) UniProt PMID:22323600 MGI:5314555 NCBI chr 2:119,156,286...119,166,145
Ensembl chr 2:119,156,265...119,166,443 		JBrowse link
G Ptf1a pancreas specific transcription factor, 1a involved_in IMP (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chr 2:19,450,474...19,452,312
Ensembl chr 2:19,450,474...19,452,312 		JBrowse link
G Six3 sine oculis-related homeobox 3 involved_in IMP (MGI:4837018|PMID:20890044) UniProt PMID:20890044 MGI:4837018 NCBI chr17:85,921,036...85,933,619
Ensembl chr17:85,921,036...85,936,730 		JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within IEP (PMID:23932931) MGI PMID:23932931 NCBI chr18:25,610,677...25,887,577
Ensembl chr18:25,610,689...25,887,214 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6 ADP-ribosylation factor-like 6 acts_upstream_of_or_within IMP (PMID:20333246)
(PMID:22139371)		 MGI PMID:20333246 PMID:22139371 NCBI chr16:59,433,312...59,459,772
Ensembl chr16:59,433,312...59,459,754 		JBrowse link
G Atp8a2 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 involved_in IMP (MGI:5574432|PMID:24413176) UniProt PMID:24413176 MGI:5574432 NCBI chr14:59,884,980...60,324,363
Ensembl chr14:59,875,989...60,434,628 		JBrowse link
G Calb1 calbindin 1 involved_in IEP (MGI:1353814|PMID:10741426) UniProt PMID:10741426 MGI:1353814 NCBI chr 4:15,881,264...15,906,709
Ensembl chr 4:15,881,264...15,908,064 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (PMID:17234588) MGI PMID:17234588 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within IGI (PMID:21903076) MGI PMID:21903076 NCBI chr 9:15,821,485...16,413,981
Ensembl chr 9:15,821,485...16,412,581 		JBrowse link
G Fjx1 four jointed box 1 acts_upstream_of_or_within IGI (PMID:21903076) MGI PMID:21903076 NCBI chr 2:102,279,711...102,282,137
Ensembl chr 2:102,279,711...102,282,844 		JBrowse link
G Foxn4 forkhead box N4 involved_in IMP (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chr 5:114,392,225...114,412,486
Ensembl chr 5:114,392,225...114,411,868 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 3:103,647,131...103,699,210
Ensembl chr 3:103,647,131...103,698,879 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Irx6 Iroquois homeobox 6 acts_upstream_of_or_within IMP (PMID:23172916) MGI PMID:23172916 NCBI chr 8:93,400,917...93,407,584
Ensembl chr 8:93,400,916...93,407,584 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within IMP (PMID:16111892) MGI PMID:16111892 NCBI chr 8:73,541,227...74,080,164
Ensembl chr 8:73,541,227...74,080,168 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IMP
IEP		 (MGI:3772525|PMID:18094249)
(MGI:1353814|PMID:10741426)		 UniProt PMID:10741426 PMID:18094249 MGI:1353814 MGI:3772525 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Megf11 multiple EGF-like-domains 11 involved_in IMP (MGI:5316136|PMID:22407321) UniProt PMID:22407321 MGI:5316136 NCBI chr 9:64,291,556...64,618,584
Ensembl chr 9:64,292,908...64,616,487 		JBrowse link
G Mir145a microRNA 145a ISO RGD PMID:34291866 RGD:155260301 NCBI chr18:61,780,896...61,780,965
Ensembl chr18:61,780,896...61,780,965 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:29654250) MGI PMID:29654250 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Prom1 prominin 1 involved_in IMP (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chr 5:44,150,963...44,260,850
Ensembl chr 5:44,150,962...44,259,374 		JBrowse link
G Ptf1a pancreas specific transcription factor, 1a involved_in IMP (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chr 2:19,450,474...19,452,312
Ensembl chr 2:19,450,474...19,452,312 		JBrowse link
G Ptprm protein tyrosine phosphatase receptor type M involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:66,973,843...67,661,486
Ensembl chr17:66,973,942...67,661,452 		JBrowse link
G Rdh13 retinol dehydrogenase 13 (all-trans and 9-cis) acts_upstream_of_or_within IMP (PMID:22605914) MGI PMID:22605914 NCBI chr 7:4,428,664...4,474,279
Ensembl chr 7:4,427,769...4,448,648 		JBrowse link
G Rs1 retinoschisis (X-linked, juvenile) 1 (human) acts_upstream_of_or_within IMP (PMID:15326152)
(PMID:11983912)		 MGI PMID:11983912 PMID:15326152 NCBI chr  X:159,548,815...159,584,800
Ensembl chr  X:159,551,009...159,582,659 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in IMP (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr11:113,667,200...113,957,855
Ensembl chr11:113,667,200...113,957,872 		JBrowse link
G Slc1a1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 involved_in
acts_upstream_of_or_within		 IMP (PMID:29677370)
(PMID:19766171)		 MGI PMID:19766171 PMID:29677370 NCBI chr19:28,812,535...28,891,360
Ensembl chr19:28,812,449...28,891,360 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr 1:19,279,132...19,309,071
Ensembl chr 1:19,279,138...19,308,800 		JBrowse link
G Tspan12 tetraspanin 12 involved_in IMP (MGI:4410396|PMID:19837033) UniProt PMID:19837033 MGI:4410396 NCBI chr 6:21,771,390...21,879,557
Ensembl chr 6:21,771,394...21,852,514 		JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within IMP (PMID:17092954) MGI PMID:17092954 NCBI chr 3:18,108,489...18,111,678
Ensembl chr 3:18,108,338...18,111,681 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated involved_in
acts_upstream_of_or_within		 IMP (PMID:12915475)
(PMID:17234588), (PMID:25147295)		 MGI PMID:12915475 PMID:17234588 PMID:25147295 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within IMP (PMID:32265257) MGI PMID:32265257 NCBI chr16:56,019,447...56,094,119
Ensembl chr16:56,024,676...56,094,119 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 involved_in ISO (PMID:15346351) BHF-UCL PMID:15346351 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (PMID:18985738) MGI PMID:18985738 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Man2a1 mannosidase 2, alpha 1 acts_upstream_of_or_within IMP (PMID:20144606) MGI PMID:20144606 NCBI chr17:64,907,683...65,062,105
Ensembl chr17:64,907,731...65,062,105 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within IMP (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chr 4:122,840,643...122,855,844
Ensembl chr 4:122,840,643...122,854,981 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IDA
IMP		 (PMID:15716406) MGI PMID:15716406 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within IMP (PMID:15728677) MGI PMID:15728677 NCBI chr16:46,208,028...46,318,898
Ensembl chr16:46,208,069...46,318,888 		JBrowse link
G Prom1 prominin 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:44,150,963...44,260,850
Ensembl chr 5:44,150,962...44,259,374 		JBrowse link
G Ptf1a pancreas specific transcription factor, 1a acts_upstream_of_or_within IMP (PMID:17301087) MGI PMID:17301087 NCBI chr 2:19,450,474...19,452,312
Ensembl chr 2:19,450,474...19,452,312 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IMP (PMID:20300562) MGI PMID:20300562 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within IMP (PMID:10725384) MGI PMID:10725384 NCBI chr  X:10,024,455...10,083,034
Ensembl chr  X:9,939,860...10,083,159 		JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 acts_upstream_of_or_within IMP (PMID:16651659) MGI PMID:16651659 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IMP (PMID:16854970), (PMID:8630490) MGI PMID:8630490 PMID:16854970 NCBI chr12:84,616,602...84,642,231
Ensembl chr12:84,616,536...84,642,231 		JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin receptor IIB involved_in IMP (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chr 9:119,231,081...119,271,214
Ensembl chr 9:119,231,184...119,264,061 		JBrowse link
G Acvrl1 activin A receptor, type II-like 1 involved_in IMP (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chr15:101,026,403...101,043,217
Ensembl chr15:101,026,403...101,043,217 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in IMP (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chr 1:59,802,721...59,917,240
Ensembl chr 1:59,802,559...59,918,173 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 acts_upstream_of_or_within IMP (PMID:19005183) MGI PMID:19005183 NCBI chr17:80,014,369...80,022,490
Ensembl chr17:80,008,966...80,022,490 		JBrowse link
G Fzd4 frizzled class receptor 4 acts_upstream_of_or_within IMP (PMID:23217714)
(PMID:25083995), (PMID:25414188)		 MGI PMID:23217714 PMID:25083995 PMID:25414188 NCBI chr 7:89,053,574...89,062,341
Ensembl chr 7:89,053,563...89,062,342 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IMP (PMID:21212189) MGI PMID:21212189 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within IMP (PMID:16111892) MGI PMID:16111892 NCBI chr 8:73,541,227...74,080,164
Ensembl chr 8:73,541,227...74,080,168 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 acts_upstream_of_or_within IMP (PMID:22272305)
(PMID:25083995)		 MGI PMID:22272305 PMID:25083995 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Mir218-1 microRNA 218-1 acts_upstream_of_or_within IMP (PMID:20947829) MGI PMID:20947829 NCBI chr 5:48,381,284...48,381,393
Ensembl chr 5:48,381,284...48,381,393 		JBrowse link
G Mir218-2 microRNA 218-2 acts_upstream_of_or_within IMP (PMID:20947829) MGI PMID:20947829 NCBI chr11:35,507,643...35,507,752
Ensembl chr11:35,507,643...35,507,752 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr 8:84,935,147...84,935,221
Ensembl chr 8:84,935,147...84,935,221 		JBrowse link
G Mir23b microRNA 23b acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr13:63,448,298...63,448,371
Ensembl chr13:63,448,298...63,448,371 		JBrowse link
G Mir24-1 microRNA 24-1 acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr13:63,449,022...63,449,089
Ensembl chr13:63,449,022...63,449,089 		JBrowse link
G Mir24-2 microRNA 24-2 acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr 8:84,935,444...84,935,550
Ensembl chr 8:84,935,444...84,935,550 		JBrowse link
G Mir27a microRNA 27a acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr 8:84,935,301...84,935,387
Ensembl chr 8:84,935,301...84,935,387 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr13:63,448,526...63,448,598
Ensembl chr13:63,448,526...63,448,598 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IDA
IMP		 (PMID:15716406), (PMID:29715368)
(PMID:25083995), (PMID:25414188)
(PMID:23217714)
(PMID:15716406), (PMID:18978344), (PMID:28575130), (PMID:29654250)		 MGI PMID:15716406 PMID:18978344 PMID:23217714 PMID:25083995 PMID:25414188 More... NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within IMP (PMID:25414188) MGI PMID:25414188 NCBI chr 8:129,085,553...129,231,957
Ensembl chr 8:129,085,085...129,229,844 		JBrowse link
G Pdgfb platelet derived growth factor, B polypeptide acts_upstream_of_or_within IMP (PMID:25224828) MGI PMID:25224828 NCBI chr15:79,880,066...79,899,178
Ensembl chr15:79,880,075...79,899,178 		JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide involved_in IGI (MGI:1931346|PMID:11239463) UniProt PMID:11239463 MGI:1931346 NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876 		JBrowse link
G Pdgfrb platelet derived growth factor receptor, beta polypeptide involved_in IMP
IGI		 (MGI:2680741|PMID:14624252)
(MGI:1931346|PMID:11239463)		 UniProt PMID:11239463 PMID:14624252 MGI:1931346 MGI:2680741 NCBI chr18:61,178,194...61,218,139
Ensembl chr18:61,178,222...61,218,133 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IMP (PMID:20300562) MGI PMID:20300562 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IDA (PMID:29715368) MGI PMID:29715368 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within IDA (PMID:31698979) MGI PMID:31698979 NCBI chr14:32,578,713...32,661,448
Ensembl chr14:32,578,713...32,661,448 		JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 acts_upstream_of_or_within IMP (PMID:22535667) MGI PMID:22535667 NCBI chr11:68,819,726...68,847,760
Ensembl chr11:68,833,981...68,848,306 		JBrowse link
G Clic4 chloride intracellular channel 4 acts_upstream_of_or_within IMP (PMID:19197003) MGI PMID:19197003 NCBI chr 4:134,941,280...135,000,071
Ensembl chr 4:134,941,280...135,000,125 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in
acts_upstream_of_or_within		 ISO
IMP
IBA
IGI		 (PMID:19837032) MGI
GO_Central		 PMID:19837032 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 7:89,053,574...89,062,341
Ensembl chr 7:89,053,563...89,062,342 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 acts_upstream_of_or_within
involved_in		 ISO
IMP
IGI		 (PMID:11956231)
(PMID:19837032)
(PMID:18263894)		 RGD
MGI		 PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 GO_REF:0000096 MGI:4417868 RGD:40902996 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP
IGI		 (PMID:18978344)
(PMID:19837032)		 MGI PMID:18978344 PMID:19837032 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Nrp1 neuropilin 1 involved_in IMP (MGI:5562961|PMID:24401374) BHF-UCL PMID:24401374 MGI:5562961 NCBI chr 8:129,085,553...129,231,957
Ensembl chr 8:129,085,085...129,229,844 		JBrowse link
G Rhoj ras homolog family member J acts_upstream_of_or_within IMP (PMID:22535667) MGI PMID:22535667 NCBI chr12:75,355,087...75,448,229
Ensembl chr12:75,355,096...75,448,230 		JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 acts_upstream_of_or_within IMP (PMID:12808454) MGI PMID:12808454 NCBI chr14:7,669,819...7,766,808
Ensembl chr14:7,669,823...7,767,484 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within IMP (PMID:17092954) MGI PMID:17092954 NCBI chr 3:18,108,489...18,111,678
Ensembl chr 3:18,108,338...18,111,681 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within IMP (PMID:16249514) MGI PMID:16249514 NCBI chr19:4,185,422...4,189,608
Ensembl chr19:4,185,422...4,194,032 		JBrowse link
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IDA (PMID:24467707) MGI PMID:24467707 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IDA (PMID:25654255) MGI PMID:25654255 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Irx5 Iroquois homeobox 5 acts_upstream_of_or_within IGI (PMID:18322081) MGI PMID:18322081 NCBI chr 8:93,084,424...93,088,084
Ensembl chr 8:93,084,253...93,102,914 		JBrowse link
G Irx6 Iroquois homeobox 6 acts_upstream_of_or_within IMP (PMID:23172916) MGI PMID:23172916 NCBI chr 8:93,400,917...93,407,584
Ensembl chr 8:93,400,916...93,407,584 		JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain acts_upstream_of_or_within IMP (PMID:28199486) MGI PMID:28199486 NCBI chr10:44,313,170...44,404,579
Ensembl chr10:44,313,173...44,404,497 		JBrowse link
G Vsx1 visual system homeobox 1 acts_upstream_of_or_within IMP
IGI		 (PMID:15043821)
(PMID:18322081)
(PMID:14745032)		 MGI PMID:14745032 PMID:15043821 PMID:18322081 NCBI chr 2:150,522,622...150,531,057
Ensembl chr 2:150,522,622...150,531,280 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IMP (PMID:8630490) MGI PMID:8630490 NCBI chr12:84,616,602...84,642,231
Ensembl chr12:84,616,536...84,642,231 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 involved_in IMP (MGI:6214404|PMID:30146259) UniProt PMID:30146259 MGI:6214404 NCBI chr15:57,558,063...57,703,228
Ensembl chr15:57,558,061...57,703,228 		JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen, type IV, alpha 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:11,248,423...11,362,889
Ensembl chr 8:11,248,423...11,362,826 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IMP (MGI:4431324|PMID:20032512) UniProt PMID:20032512 MGI:4431324 NCBI chr17:80,014,369...80,022,490
Ensembl chr17:80,008,966...80,022,490 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in IMP (MGI:3621833|PMID:15035989) BHF-UCL PMID:15035989 MGI:3621833 NCBI chr 7:89,053,574...89,062,341
Ensembl chr 7:89,053,563...89,062,342 		JBrowse link
G Lama1 laminin, alpha 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr17:68,004,129...68,129,640
Ensembl chr17:68,004,254...68,129,642 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 involved_in IMP (MGI:6092915|PMID:27031698) CACAO PMID:27031698 MGI:6092915 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:18978344), (PMID:22394677), (PMID:28575130) MGI PMID:18978344 PMID:22394677 PMID:28575130 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in IMP (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within IMP (PMID:16249514) MGI PMID:16249514 NCBI chr19:4,185,422...4,189,608
Ensembl chr19:4,185,422...4,194,032 		JBrowse link
G Cnga3 cyclic nucleotide gated channel alpha 3 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 1:37,257,317...37,302,465
Ensembl chr 1:37,253,515...37,302,465 		JBrowse link
G Crb2 crumbs family member 2 involved_in IMP (MGI:5461109|PMID:23001562) UniProt PMID:23001562 MGI:5461109 NCBI chr 2:37,666,238...37,689,115
Ensembl chr 2:37,666,261...37,689,115 		JBrowse link
G Dio3 deiodinase, iodothyronine type III acts_upstream_of_or_within IMP (PMID:20203194) MGI PMID:20203194 NCBI chr12:110,245,664...110,247,531
Ensembl chr12:110,245,502...110,247,531 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IMP (PMID:17065522), (PMID:21052544) MGI PMID:17065522 PMID:21052544 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr13:117,738,856...118,117,564
Ensembl chr13:117,738,856...118,123,954 		JBrowse link
G Mir124a-1 microRNA 124a-1 acts_upstream_of_or_within IGI
IMP		 (PMID:21857657) MGI PMID:21857657 NCBI chr14:64,828,106...64,828,190
Ensembl chr14:64,828,106...64,828,190 		JBrowse link
G Mir124a-2 microRNA 124a-2 acts_upstream_of_or_within IGI (PMID:21857657) MGI PMID:21857657 NCBI chr 3:17,849,826...17,849,934
Ensembl chr 3:17,849,826...17,849,934 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within IGI (PMID:23341629) MGI PMID:23341629 NCBI chr 6:30,165,917...30,165,991
Ensembl chr 6:30,165,917...30,165,991 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within IGI (PMID:23341629) MGI PMID:23341629 NCBI chr 6:30,169,667...30,169,736
Ensembl chr 6:30,169,667...30,169,736 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within IGI (PMID:23341629) MGI PMID:23341629 NCBI chr 6:30,169,445...30,169,550
Ensembl chr 6:30,169,445...30,169,550 		JBrowse link
G Pde6c phosphodiesterase 6C, cGMP specific, cone, alpha prime acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr19:38,121,220...38,172,391
Ensembl chr19:38,121,229...38,172,406 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IDA (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) involved_in IDA (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of IMP (PMID:20203194) MGI PMID:20203194 NCBI chr14:4,429,599...4,810,538
Ensembl chr14:4,431,611...4,809,435 		JBrowse link
G Thy1 thymus cell antigen 1, theta involved_in IMP (MGI:1349255|PMID:10567740) UniProt PMID:10567740 MGI:1349255 NCBI chr 9:43,954,681...43,959,876
Ensembl chr 9:43,954,681...43,959,876 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:45,844,774...45,887,984
Ensembl chr 7:45,844,774...45,887,927 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IMP (PMID:36125046) MGI PMID:36125046 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IMP
IGI
IDA		 (PMID:19815523) MGI PMID:19815523 NCBI chr 9:107,551,636...107,556,833
Ensembl chr 9:107,551,673...107,556,911 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IGI
IDA
IMP		 (PMID:19815523) MGI PMID:19815523 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Notch1 notch 1 acts_upstream_of IMP (PMID:16452096) MGI PMID:16452096 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement component factor h acts_upstream_of_or_within IMP (PMID:23844226), (PMID:25991857) MGI PMID:23844226 PMID:25991857 NCBI chr 1:140,013,593...140,111,149
Ensembl chr 1:140,012,446...140,111,502 		JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:18582859) MGI PMID:18582859 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Med1 mediator complex subunit 1 involved_in IMP (MGI:2158098|PMID:11724781) BHF-UCL PMID:11724781 MGI:2158098 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within IMP (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chr 4:122,840,643...122,855,844
Ensembl chr 4:122,840,643...122,854,981 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:9071226) MGI PMID:9071226 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Pax2 paired box 2 involved_in IMP (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,744,484...44,826,310 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (PMID:20159594) MGI PMID:20159594 NCBI chr10:55,890,389...56,106,495
Ensembl chr10:55,890,389...56,104,785 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within IMP (PMID:33064130) MGI PMID:33064130 NCBI chr 7:88,789,230...89,053,911
Ensembl chr 7:88,788,922...89,053,430 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in IMP (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated acts_upstream_of_or_within IMP (PMID:16000322) MGI PMID:16000322 NCBI chr 6:85,564,482...85,698,973
Ensembl chr 6:85,564,513...85,679,735 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IMP (PMID:15173597) MGI PMID:15173597 NCBI chr 9:59,229,249...59,260,791
Ensembl chr 9:59,229,273...59,260,791 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within IMP (PMID:17255172) MGI PMID:17255172 NCBI chr 2:180,416,174...180,418,693
Ensembl chr 2:180,416,174...180,418,693 		JBrowse link
G Cfh complement component factor h acts_upstream_of_or_within IMP (PMID:17921253) MGI PMID:17921253 NCBI chr 1:140,013,593...140,111,149
Ensembl chr 1:140,012,446...140,111,502 		JBrowse link
G Miat myocardial infarction associated transcript (non-protein coding) acts_upstream_of_or_within IMP (PMID:16877424) MGI PMID:16877424 NCBI chr 5:112,361,094...112,376,814
Ensembl chr 5:112,361,094...112,377,261 		JBrowse link
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) acts_upstream_of_or_within IMP (PMID:17712420) MGI PMID:17712420 NCBI chr11:100,960,918...100,968,483
Ensembl chr11:100,960,838...100,968,498 		JBrowse link
G Nrl neural retina leucine zipper gene acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:11694879) MGI
GO_Central		 PMID:11694879 GO_REF:0000033 NCBI chr14:55,756,973...55,762,438
Ensembl chr14:55,756,435...55,762,438 		JBrowse link
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 acts_upstream_of_or_within IMP (PMID:10516311) MGI PMID:10516311 NCBI chr13:58,954,363...59,281,782
Ensembl chr13:58,954,383...59,281,784 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740 PMID:19805139 MGI:3652638 MGI:4366105 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) involved_in IDA (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:52,341,698...52,398,796
Ensembl chr14:52,348,161...52,401,003 		JBrowse link
G Rpgrip1l Rpgrip1-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in IMP (MGI:6512737|PMID:33603070) UniProt PMID:33603070 MGI:6512737 NCBI chr 4:156,331,423...156,342,409
Ensembl chr 4:156,331,423...156,340,717 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in IMP (MGI:6512737|PMID:33603070) UniProt PMID:33603070 MGI:6512737 NCBI chr 3:30,800,481...30,821,323
Ensembl chr 3:30,800,442...30,821,323 		JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 acts_upstream_of_or_within IMP (PMID:19966281) MGI PMID:19966281 NCBI chr 7:63,803,583...63,923,630
Ensembl chr 7:63,803,583...63,919,523 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IMP (PMID:36125046) MGI PMID:36125046 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of IDA (PMID:15207851) MGI PMID:15207851 NCBI chr19:12,740,892...12,742,996
Ensembl chr19:12,741,024...12,742,996 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IGI
IDA
IMP		 (PMID:19815523) MGI PMID:19815523 NCBI chr 9:107,551,636...107,556,833
Ensembl chr 9:107,551,673...107,556,911 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IGI
IMP
IDA		 (PMID:19815523) MGI PMID:19815523 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:9071226) MGI PMID:9071226 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Ptn pleiotrophin involved_in ISO RGD
MGI		 PMID:16914133 GO_REF:0000096 MGI:4417868 RGD:9831439 NCBI chr 6:36,691,863...36,787,114
Ensembl chr 6:36,691,864...36,787,155 		JBrowse link
G Rorb RAR-related orphan receptor beta acts_upstream_of_or_within IMP (PMID:25296752) MGI PMID:25296752 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 acts_upstream_of
acts_upstream_of_or_within		 IGI (PMID:19490914) MGI PMID:19490914 NCBI chr17:25,784,865...25,789,666
Ensembl chr17:25,784,634...25,789,726 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IGI (PMID:19490914) MGI PMID:19490914 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within IMP (PMID:15207851) MGI PMID:15207851 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IMP
IDA		 (PMID:25654255) MGI PMID:25654255 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346 		JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) acts_upstream_of_or_within IMP (PMID:26607664) MGI PMID:26607664 NCBI chr11:100,960,918...100,968,483
Ensembl chr11:100,960,838...100,968,498 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr 6:36,691,863...36,787,114
Ensembl chr 6:36,691,864...36,787,155 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within IMP (PMID:32960171) MGI PMID:32960171 NCBI chr 6:115,903,741...115,916,999
Ensembl chr 6:115,908,709...115,916,997 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    developmental process 7369
      anatomical structure development 6841
        retina development in camera-type eye 234
          negative regulation of retina development in camera-type eye + 0
          neural retina development + 108
          positive regulation of retina development in camera-type eye + 0
          regulation of retina development in camera-type eye + 1
          retina morphogenesis in camera-type eye + 92
          retina vasculature development in camera-type eye + 30
          retinal pigment epithelium development 8
Path 2
Term Annotations click to browse term
  biological_process 28573
    developmental process 7369
      anatomical structure development 6841
        multicellular organism development 5433
          system development 4660
            sensory system development 500
              visual system development 494
                eye development 491
                  camera-type eye development 441
                    retina development in camera-type eye 234
                      negative regulation of retina development in camera-type eye + 0
                      neural retina development + 108
                      positive regulation of retina development in camera-type eye + 0
                      regulation of retina development in camera-type eye + 1
                      retina morphogenesis in camera-type eye + 92
                      retina vasculature development in camera-type eye + 30
                      retinal pigment epithelium development 8
paths to the root