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ONTOLOGY REPORT - ANNOTATIONS


Term:convergent extension involved in gastrulation
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Accession:GO:0060027 term browser browse the term
Definition:The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis usually resulting in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.



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convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO UniProtKB:Q6AZT7 (PMID:18371931) RGD PMID:18371931 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383
JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO MGI:106613 (MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:3624185 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO MGI:2135272|MGI:2429760|MGI:94941 (MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:3624185 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:106613|MGI:1857642 (MGI:3624185|PMID:16571627), (MGI:3703464|PMID:17229766) RGD PMID:16571627 PMID:17229766 MGI:3624185 MGI:3703464 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:108078|MGI:1860298 (MGI:3793375|PMID:18257070)
Ensembl
RGD
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
planar cell polarity pathway involved in gastrula mediolateral intercalation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO MGI:98958 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO MGI:101948 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18877
    developmental process 6926
      anatomical structure morphogenesis 2992
        embryonic morphogenesis 698
          convergent extension involved in gastrulation 7
            convergent extension involved in neural plate elongation + 3
            convergent extension involved in notochord morphogenesis + 0
            convergent extension involved in rhombomere morphogenesis + 0
            convergent extension involved in somitogenesis + 1
            dorsal convergence 0
            mediolateral intercalation + 2
            negative regulation of convergent extension involved in gastrulation + 0
            positive regulation of convergent extension involved in gastrulation + 0
            regulation of convergent extension involved in gastrulation + 0
Path 2
Term Annotations click to browse term
  biological_process 18877
    developmental process 6926
      anatomical structure development 6400
        anatomical structure morphogenesis 2992
          tissue morphogenesis 722
            morphogenesis of an epithelium 601
              convergent extension 15
                convergent extension involved in gastrulation 7
                  convergent extension involved in neural plate elongation + 3
                  convergent extension involved in notochord morphogenesis + 0
                  convergent extension involved in rhombomere morphogenesis + 0
                  convergent extension involved in somitogenesis + 1
                  dorsal convergence 0
                  mediolateral intercalation + 2
                  negative regulation of convergent extension involved in gastrulation + 0
                  positive regulation of convergent extension involved in gastrulation + 0
                  regulation of convergent extension involved in gastrulation + 0
paths to the root