convergent extension involved in gastrulation - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS	{{ watchLinkText }}

Term:	convergent extension involved in gastrulation	go back to main search page
Accession:	GO:0060027	browse the term
Definition:	The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis usually resulting in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.

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Rat (8) Mouse (8) Human (10) Chinchilla (7) Bonobo (7) Dog (7) Squirrel (7) Pig (7) Green Monkey (7) Naked Mole-rat (7) All
Genes (8)

convergent extension involved in gastrulation

term browser

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Object Name

Qualifiers

Evidence

Notes

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PubMed Reference(s)

RGD Reference(s)

Position

G

nephrocystin 3

involved_in

UniProtKB:Q6AZT7 (PMID:18371931)

NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383

convergent extension involved in neural plate elongation

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Object Name

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Evidence

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PubMed Reference(s)

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G

dishevelled segment polarity protein 1

acts_upstream_of_or_within

MGI:106613 (MGI:3624185|PMID:16571627)

NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664

G

dishevelled segment polarity protein 2

acts_upstream_of_or_within

MGI:2135272|MGI:2429760|MGI:94941 (MGI:3624185|PMID:16571627)

NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820

G

VANGL planar cell polarity protein 2

acts_upstream_of_or_within

MGI:106613|MGI:1857642 (MGI:3624185|PMID:16571627), (MGI:3703464|PMID:17229766)

PMID:16571627 PMID:17229766

MGI:3624185 MGI:3703464

NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378

G

zinc finger protein 568

acts_upstream_of_or_within

MGI:3578538 (MGI:3807361|PMID:18701545)

NCBI chr 1:85,206,643...85,257,759
Ensembl chr 1:85,207,579...85,257,505

convergent extension involved in somitogenesis

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Object Name

Qualifiers

Evidence

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Source

PubMed Reference(s)

RGD Reference(s)

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G

secreted frizzled-related protein 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:108078|MGI:1860298 (MGI:3793375|PMID:18257070)

GO_REF:0000107 MGI:3793375

NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286

planar cell polarity pathway involved in gastrula mediolateral intercalation

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Object Name

Qualifiers

Evidence

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Source

PubMed Reference(s)

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G

Wnt family member 11

acts_upstream_of_or_within

MGI:98958 (MGI:5634837|PMID:25813538)

NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294

G

Wnt family member 5A

acts_upstream_of_or_within
involved_in

MGI:101948 (MGI:5634837|PMID:25813538)
GO_REF:0000107

GO_REF:0000107 MGI:5634837

NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234

Term paths to the root

Path 1
Term	Annotations
biological_process	19818
developmental process	6893
anatomical structure morphogenesis	2949
embryonic morphogenesis	697
convergent extension involved in gastrulation	8
convergent extension involved in neural plate elongation +	4
convergent extension involved in notochord morphogenesis +	0
convergent extension involved in rhombomere morphogenesis +	0
convergent extension involved in somitogenesis +	1
dorsal convergence	0
mediolateral intercalation +	2
negative regulation of convergent extension involved in gastrulation +	0
positive regulation of convergent extension involved in gastrulation +	0
regulation of convergent extension involved in gastrulation +	0
Path 2
Term	Annotations
biological_process	19818
developmental process	6893
anatomical structure development	6417
anatomical structure morphogenesis	2949
tissue morphogenesis	722
morphogenesis of an epithelium	601
convergent extension	16
convergent extension involved in gastrulation	8
convergent extension involved in neural plate elongation +	4
convergent extension involved in notochord morphogenesis +	0
convergent extension involved in rhombomere morphogenesis +	0
convergent extension involved in somitogenesis +	1
dorsal convergence	0
mediolateral intercalation +	2
negative regulation of convergent extension involved in gastrulation +	0
positive regulation of convergent extension involved in gastrulation +	0
regulation of convergent extension involved in gastrulation +	0

paths to the root