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ONTOLOGY REPORT - ANNOTATIONS

Term:convergent extension
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Accession:GO:0060026 term browser browse the term
Definition:The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis.
Synonyms:xref: Wikipedia:Convergent_extension


show annotations for term's descendants           Sort by:
convergent extension term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:4413372 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Nkd1 NKD inhibitor of WNT signaling pathway 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5437442|PMID:11274398)		 Ensembl
RGD		 PMID:11274398 GO_REF:0000107 MGI:5437442 NCBI chr19:18,476,344...18,549,380
Ensembl chr19:18,476,344...18,549,380 		JBrowse link
G Nphp3 nephrocystin 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO MGI:3640803 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 9:14,352,155...14,418,473
Ensembl chr 9:14,351,202...14,418,494 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO MGI:1857617 (MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:3714704 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
cardioblast migration to the midline involved in heart field formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:1339460|PMID:10393122) RGD PMID:10393122 MGI:1339460 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
convergent extension involved in axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:108078|MGI:1860298 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Sfrp5 secreted frizzled-related protein 5 acts_upstream_of_or_within ISO MGI:108078|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 1:241,006,762...241,011,224
Ensembl chr 1:241,006,762...241,011,224 		JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5300649|PMID:22110054) RGD PMID:22110054 MGI:5300649 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:1857642 (MGI:3703464|PMID:17229766) RGD PMID:17229766 MGI:3703464 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO MGI:98958 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:101948|MGI:1857617 (MGI:5634837|PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zfp568 zinc finger protein 568 acts_upstream_of_or_within ISO MGI:3578538 (MGI:3807361|PMID:18701545) RGD PMID:18701545 MGI:3807361 NCBI chr 1:85,206,643...85,257,759
Ensembl chr 1:85,207,579...85,257,505 		JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO UniProtKB:Q6AZT7 (PMID:18371931) RGD PMID:18371931 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO MGI:106613 (MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:3624185 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO MGI:2135272|MGI:2429760|MGI:94941 (MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:3624185 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:106613|MGI:1857642 (MGI:3624185|PMID:16571627), (MGI:3703464|PMID:17229766) RGD PMID:16571627 PMID:17229766 MGI:3624185 MGI:3703464 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Zfp568 zinc finger protein 568 acts_upstream_of_or_within ISO MGI:3578538 (MGI:3807361|PMID:18701545) RGD PMID:18701545 MGI:3807361 NCBI chr 1:85,206,643...85,257,759
Ensembl chr 1:85,207,579...85,257,505 		JBrowse link
convergent extension involved in organogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO MGI:106613|MGI:2137230 (MGI:3589836|PMID:16116426) RGD PMID:16116426 MGI:3589836 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO MGI:94941 (MGI:3589836|PMID:16116426) RGD PMID:16116426 MGI:3589836 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO MGI:98958 (MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:3714704 NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:98958 (MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:3714704 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1298218|MGI:2135272 (MGI:3714704|PMID:17433286), (MGI:4413372|PMID:19795512)
GO_REF:0000107		 RGD
Ensembl		 PMID:17433286 PMID:19795512 GO_REF:0000107 MGI:3714704 MGI:4413372 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:108078|MGI:1860298 (MGI:3793375|PMID:18257070)		 Ensembl
RGD		 PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
planar cell polarity pathway involved in gastrula mediolateral intercalation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO MGI:98958 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:101948 (MGI:5634837|PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    developmental process 6909
      anatomical structure morphogenesis 2939
        tissue morphogenesis 722
          morphogenesis of an epithelium 601
            convergent extension 16
              convergent extension involved in axis elongation + 8
              convergent extension involved in gastrulation + 8
              convergent extension involved in organogenesis + 7
Path 2
Term Annotations click to browse term
  biological_process 19553
    developmental process 6909
      anatomical structure development 6435
        anatomical structure morphogenesis 2939
          tissue morphogenesis 722
            morphogenesis of an epithelium 601
              convergent extension 16
                convergent extension involved in axis elongation + 8
                convergent extension involved in gastrulation + 8
                convergent extension involved in organogenesis + 7
paths to the root