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ONTOLOGY REPORT - ANNOTATIONS

Term:digestive system development
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Accession:GO:0055123 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.


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digestive system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BARX1 BARX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:43,284,609...43,288,269
Ensembl chr 3:43,284,464...43,288,281 		JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (PMID:19276117) MGI PMID:19276117 NCBI chr 2:2,019,391...2,022,092
Ensembl chr 2:2,019,830...2,021,853 		JBrowse link
G CELA1 chymotrypsin like elastase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G GIP gastric inhibitory polypeptide ISO RGD PMID:8674860 RGD:2312540 NCBI chr12:25,160,783...25,167,952
Ensembl chr12:25,160,789...25,167,940 		JBrowse link
G HIP1R huntingtin interacting protein 1 related involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:29,996,388...30,024,343
Ensembl chr14:29,993,655...30,024,216 		JBrowse link
G NKX3-2 NK3 homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:9,179,061...9,183,340
Ensembl chr 8:9,179,232...9,182,892 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:111,697,364...111,723,295
Ensembl chr 8:111,698,757...111,723,298 		JBrowse link
G WDPCP WD repeat containing planar cell polarity effector acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:78,435,154...78,726,313
Ensembl chr 3:78,268,922...78,856,893 		JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:30,453,969...30,553,699
Ensembl chr 8:30,463,862...30,553,703 		JBrowse link
chordate pharynx development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (PMID:12810603) MGI PMID:12810603 NCBI chr13:122,266,632...122,277,513
Ensembl chr13:122,266,626...122,277,645 		JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:50,528,950...50,558,664
Ensembl chr14:50,528,955...50,558,662 		JBrowse link
G EDNRB endothelin receptor type B involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,073,300...50,102,879
Ensembl chr11:50,072,554...50,102,884 		JBrowse link
G FOXE1 forkhead box E1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:239,727,769...239,732,461
Ensembl chr 1:239,727,855...239,728,976 		JBrowse link
cloaca development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,397...28,760,467 		JBrowse link
cloacal septation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TP63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:127,115,990...127,347,082
Ensembl chr13:127,116,105...127,347,068 		JBrowse link
G WNT11 Wnt family member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:10,413,182...10,435,158
Ensembl chr 9:10,413,263...10,435,100 		JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC103 coiled-coil domain containing 103 involved_in ISO (PMID:22581229) BHF-UCL PMID:22581229 NCBI chr12:18,469,705...18,474,316 JBrowse link
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:118,623,787...118,773,205
Ensembl chr13:118,626,330...118,682,281 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,341,953...2,384,066
Ensembl chr12:2,341,957...2,384,025 		JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:4,457,283...4,483,641
Ensembl chr 6:4,457,291...4,479,828 		JBrowse link
G MEGF8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:18043505) MGI PMID:18043505 NCBI chr 6:49,572,905...49,619,120
Ensembl chr 6:49,577,403...49,618,921 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:112,592,951...112,605,087
Ensembl chr  X:112,593,301...112,604,814 		JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:73,843,770...73,901,020
Ensembl chr13:73,858,427...73,900,967 		JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:73,843,770...73,901,020
Ensembl chr13:73,858,427...73,900,967 		JBrowse link
digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683 		JBrowse link
G CCKBR cholecystokinin B receptor acts_upstream_of_or_within ISO (PMID:15476751) MGI PMID:15476751 NCBI chr 9:3,409,222...3,419,513 JBrowse link
G CCNB1 cyclin B1 ISO perinatal small intestine RGD PMID:17692466 RGD:2316322 NCBI chr16:47,338,239...47,348,385
Ensembl chr16:47,338,110...47,348,377 		JBrowse link
G CD36 CD36 molecule ISO RGD PMID:11595646 RGD:628450 NCBI chr 9:99,685,748...99,782,296
Ensembl chr 9:99,605,181...99,782,105 		JBrowse link
G CDX1 caudal type homeobox 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:151,202,842...151,217,132
Ensembl chr 2:151,202,777...151,216,988 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057 		JBrowse link
G CDX4 caudal type homeobox 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:59,089,131...59,100,958
Ensembl chr  X:59,091,946...59,100,431 		JBrowse link
G CHD8 chromodomain helicase DNA binding protein 8 involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:77,719,476...77,780,148
Ensembl chr 7:77,719,582...77,780,146 		JBrowse link
G CLDN18 claudin 18 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:78,794,573...78,823,761
Ensembl chr13:78,794,580...78,822,796 		JBrowse link
G CLMP CXADR like membrane protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:49,989,967...50,094,223
Ensembl chr 9:49,989,767...50,093,417 		JBrowse link
G COBL cordon-bleu WH2 repeat protein involved_in ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr 9:136,850,521...137,055,249 JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in
acts_upstream_of_or_within 		ISO (PMID:20587693)
(PMID:9050868) 		MGI PMID:9050868 PMID:20587693 NCBI chr15:93,556,914...93,595,678
Ensembl chr15:93,526,603...93,596,363 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO RGD PMID:12162855 RGD:727721 NCBI chr 7:58,802,887...58,809,155
Ensembl chr 7:58,802,887...58,809,775 		JBrowse link
G DCHS1 dachsous cadherin-related 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:3,099,525...3,134,825
Ensembl chr 9:3,113,451...3,134,821 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224 		JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:17916272 RGD:2312267 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760 		JBrowse link
G FAT4 FAT atypical cadherin 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:99,141,967...99,312,131
Ensembl chr 8:99,148,496...99,310,519 		JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		(PMID:15234214) UniProt
MGI		 PMID:15234214 GO_REF:0000024 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,713...131,289,425 		JBrowse link
G FOXF1 forkhead box F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659 		JBrowse link
G HRH2 histamine receptor H2 acts_upstream_of_or_within ISO (PMID:10862789)
(PMID:15476751) 		MGI PMID:10862789 PMID:15476751 NCBI chr 2:81,883,670...81,932,464
Ensembl chr 2:81,883,673...81,932,275 		JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in IEA
ISS 		Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:41,402,334...41,492,306
Ensembl chr 8:41,402,043...41,493,734 		JBrowse link
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:32,871,837...32,979,150
Ensembl chr 2:32,871,871...32,979,148 		JBrowse link
G MIXL1 Mix paired-like homeobox acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:14,102,273...14,105,544
Ensembl chr10:14,102,290...14,105,983 		JBrowse link
G MUC19 mucin 19, oligomeric acts_upstream_of_or_within ISO (PMID:37475871) MGI PMID:37475871 NCBI chr 5:71,964,131...72,069,073 JBrowse link
G MUC4 mucin 4, cell surface associated ISO RGD PMID:15389518 RGD:2303738 NCBI chr13:134,192,412...134,248,435 JBrowse link
G MYOCD myocardin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:56,931,628...57,029,258
Ensembl chr12:56,931,317...57,029,258 		JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 acts_upstream_of_or_within ISO (PMID:36720308) MGI PMID:36720308 NCBI chr15:82,967,485...83,146,185
Ensembl chr15:82,973,656...83,146,183 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,469...22,363,821 		JBrowse link
G NKX2-2 NK2 homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:29,275,656...29,279,572
Ensembl chr17:29,275,698...29,278,606 		JBrowse link
G NKX2-3 NK2 homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:110,720,384...110,724,002
Ensembl chr14:110,720,394...110,723,995 		JBrowse link
G NKX2-6 NK2 homeobox 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:7,811,200...7,815,553
Ensembl chr14:7,811,200...7,815,645 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:236,508,994...236,529,172
Ensembl chr 1:236,508,998...236,529,128 		JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 ISO intestine RGD PMID:17341476 RGD:401827282 NCBI chr 2:15,315,283...15,336,785
Ensembl chr 2:15,315,282...15,334,820 		JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chr 5:83,607,222...83,732,668
Ensembl chr 5:83,604,294...83,684,604 		JBrowse link
G NTS neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chr 5:96,261,299...96,272,947
Ensembl chr 5:96,260,560...96,272,976 		JBrowse link
G OXTR oxytocin receptor ISO RGD PMID:19003903 RGD:2303961 NCBI chr13:65,134,055...65,155,543
Ensembl chr13:65,134,057...65,153,487 		JBrowse link
G PDGFA platelet derived growth factor subunit A acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:23938297) MGI
Ensembl		 PMID:23938297 GO_REF:0000107 NCBI chr 3:296,399...322,967
Ensembl chr 3:301,584...321,712 		JBrowse link
G PDGFC platelet derived growth factor C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:45,579,065...45,808,789
Ensembl chr 8:45,578,002...45,808,748 		JBrowse link
G PDX1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:5,303,609...5,309,063
Ensembl chr11:5,303,609...5,309,063 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:39,849,579...39,899,455
Ensembl chr 3:39,849,609...39,899,455 		JBrowse link
G RB1 RB transcriptional corepressor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:19,186,754...19,317,642
Ensembl chr11:19,186,761...19,317,690 		JBrowse link
G RCBTB2 RCC1 and BTB domain containing protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:19,081,841...19,182,488
Ensembl chr11:19,106,531...19,182,484 		JBrowse link
G SLC4A2 solute carrier family 4 member 2 ISO RGD PMID:8770049 RGD:9999233 NCBI chr18:6,149,459...6,166,622
Ensembl chr18:6,149,459...6,165,212 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,743...19,478,898 		JBrowse link
G TGFB1 transforming growth factor beta 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 6:49,332,169...49,348,642
Ensembl chr 6:49,332,173...49,349,046 		JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,539...8,390,341 		JBrowse link
G TGFB3 transforming growth factor beta 3 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 7:99,133,873...99,162,239
Ensembl chr 7:99,133,879...99,162,232 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 1:240,842,735...240,918,267
Ensembl chr 1:240,860,156...240,918,528 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr13:16,784,370...16,875,828
Ensembl chr13:16,784,490...16,878,160 		JBrowse link
G THRA thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chr12:22,270,506...22,296,684
Ensembl chr12:22,270,062...22,296,618 		JBrowse link
G TK1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chr12:3,785,997...3,794,824
Ensembl chr12:3,786,031...3,795,917 		JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484 		JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGR2 anterior gradient 2, protein disulphide isomerase family member involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:86,042,070...86,053,893
Ensembl chr 9:86,041,369...86,053,857 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:158,337,403...158,518,214
Ensembl chr 1:158,337,522...158,518,879 		JBrowse link
G CFC1B cryptic, EGF-CFC family member 1B acts_upstream_of_or_within ISO (PMID:10521397) MGI PMID:10521397 NCBI chr15:56,943,183...56,951,929 JBrowse link
G EGFR epidermal growth factor receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,475,589 		JBrowse link
G EPHB3 EPH receptor B3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:122,467,561...122,488,296
Ensembl chr13:122,467,588...122,488,292 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:19407216) MGI PMID:19407216 NCBI chr 8:879,151...894,968
Ensembl chr 8:879,159...894,964 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:190,625,436...190,673,926
Ensembl chr 1:190,625,244...190,674,845 		JBrowse link
G IL18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chr 9:39,839,959...39,861,258
Ensembl chr 9:39,834,973...39,861,219 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:236,508,994...236,529,172
Ensembl chr 1:236,508,998...236,529,128 		JBrowse link
G PERCC1 proline and glutamate rich with coiled coil 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:40,430,229...40,436,735 JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921 		JBrowse link
G SFRP5 secreted frizzled related protein 5 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:19300477) Ensembl
MGI		 PMID:19300477 GO_REF:0000107 NCBI chr14:109,120,382...109,125,655
Ensembl chr14:109,119,822...109,125,686 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484 		JBrowse link
G SOX10 SRY-box transcription factor 10 involved_in
acts_upstream_of_or_within 		ISS
IEA 		AgBase
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:9,890,439...9,901,746
Ensembl chr 5:9,891,525...9,901,743 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:59,317,930...59,347,274
Ensembl chr 7:59,318,011...59,347,266 		JBrowse link
G STX2 syntaxin 2 ISO RGD PMID:12464668 RGD:1298909 NCBI chr14:24,341,473...24,380,536
Ensembl chr14:24,341,549...24,380,626 		JBrowse link
G TP73 tumor protein p73 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:65,169,770...65,228,997
Ensembl chr 6:65,182,456...65,228,990 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,051,277...90,080,635 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207 		JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:47,044,492...47,072,232
Ensembl chr17:47,044,497...47,072,245 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046 		JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:69,932,646...69,935,861
Ensembl chr 8:69,932,643...69,935,861 		JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509 		JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:1,554,648...1,581,938
Ensembl chr11:1,554,763...1,582,408 		JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659 		JBrowse link
G FOXF2 forkhead box F2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:715,001...719,781
Ensembl chr 7:715,001...720,104 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900 		JBrowse link
G MYB MYB proto-oncogene, transcription factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:28,819,500...28,856,222
Ensembl chr 1:28,819,503...28,856,999 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:228,854,587...229,308,054
Ensembl chr 1:228,854,595...229,308,906 		JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:98,258,456...98,268,539
Ensembl chr 3:98,258,463...98,268,553 		JBrowse link
G RARB retinoic acid receptor beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:12,336,387...12,507,688
Ensembl chr13:12,336,972...12,507,680 		JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:55,903,693...55,906,976
Ensembl chr18:55,903,699...55,906,945 		JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,025...33,748,704 		JBrowse link
G SCT secretin ISO RGD PMID:1711228 RGD:729899 NCBI chr 2:382,783...385,082
Ensembl chr 2:383,799...384,841 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:59,317,930...59,347,274
Ensembl chr 7:59,318,011...59,347,266 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISS
IEA 		AgBase
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,539...8,390,341 		JBrowse link
G TNF tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:23,699,635...23,702,393
Ensembl chr 7:23,699,628...23,702,415 		JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		(PMID:16618415), (PMID:21492869)
(PMID:21550054) 		UniProt
MGI		 PMID:16618415 PMID:21492869 PMID:21550054 GO_REF:0000024 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,713...131,289,425 		JBrowse link
G FOXF1 forkhead box F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16127717) MGI PMID:16127717 NCBI chr14:14,858,470...14,938,156
Ensembl chr14:14,884,662...14,939,941 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900 		JBrowse link
G HLX H2.0 like homeobox acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:10,263,441...10,269,882
Ensembl chr10:10,264,244...10,269,879 		JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:39,143,119...39,201,631
Ensembl chr12:39,143,121...39,201,631 		JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:127,500,759...127,503,207
Ensembl chr 3:127,500,763...127,503,257 		JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,469...22,363,821 		JBrowse link
G OVOL2 ovo like zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:26,417,793...26,451,707
Ensembl chr17:26,417,795...26,451,928 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:40,966,568...41,021,440
Ensembl chr 8:40,967,493...41,021,441 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:111,697,364...111,723,295
Ensembl chr 8:111,698,757...111,723,298 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484 		JBrowse link
G SHOX2 SHOX homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,889,785 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,945...95,463,251 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:129,797,438...129,800,568
Ensembl chr 3:129,798,854...129,800,197 		JBrowse link
G TCF21 transcription factor 21 involved_in ISO
ISS 		RGD
UniProt		 PMID:11804032 GO_REF:0000024 RGD:727206 NCBI chr 1:29,975,280...29,978,273
Ensembl chr 1:29,975,280...29,978,255 		JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr 2:136,422,740...136,456,323
Ensembl chr 2:136,422,940...136,457,910 		JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr14:123,343,695...123,547,332
Ensembl chr14:123,343,412...123,546,417 		JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:23142660) MGI PMID:23142660 NCBI chr 7:29,624,224...29,639,168
Ensembl chr 7:29,624,230...29,639,140 		JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659 		JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:23,237,699...23,276,086
Ensembl chr13:23,237,699...23,267,373 		JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311 		JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,223...31,295,893 		JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659 		JBrowse link
G FOXP4 forkhead box P4 acts_upstream_of_or_within ISO (PMID:15361625) MGI PMID:15361625 NCBI chr 7:36,760,643...36,793,620
Ensembl chr 7:36,742,752...36,793,619 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932) 		MGI PMID:9136932 PMID:9136933 NCBI chr14:14,858,470...14,938,156
Ensembl chr14:14,884,662...14,939,941 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,142...88,528,326 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484 		JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:97,415,360...97,511,388
Ensembl chr 1:97,415,716...97,511,357 		JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,103...165,124,449 		JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:21305474) Ensembl
BHF-UCL		 PMID:21305474 GO_REF:0000107 NCBI chr 4:76,854,218...76,857,143
Ensembl chr 4:76,854,150...76,857,148 		JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DACT1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (PMID:20145239) UniProt PMID:20145239 NCBI chr 1:187,719,391...187,729,568
Ensembl chr 1:187,719,290...187,729,422 		JBrowse link
G HOXA13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chr18:45,373,340...45,379,046
Ensembl chr18:45,373,440...45,376,325 		JBrowse link
G HOXD13 homeobox D13 ISO RGD PMID:17161201 RGD:1599527 NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,893,972...81,896,944 		JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr 2:136,422,740...136,456,323
Ensembl chr 2:136,422,940...136,457,910 		JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr14:123,343,695...123,547,332
Ensembl chr14:123,343,412...123,546,417 		JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,713...131,289,425 		JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:127,500,759...127,503,207
Ensembl chr 3:127,500,763...127,503,257 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:111,697,364...111,723,295
Ensembl chr 8:111,698,757...111,723,298 		JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:76,854,218...76,857,143
Ensembl chr 4:76,854,150...76,857,148 		JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,073,300...50,102,879
Ensembl chr11:50,072,554...50,102,884 		JBrowse link
enterocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G YAP1 Yes1 associated transcriptional regulator acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 9:32,811,629...32,924,926
Ensembl chr 9:32,811,226...32,925,606 		JBrowse link
exocrine pancreas development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELA1 chymotrypsin like elastase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G IGF1 insulin like growth factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,033 		JBrowse link
G IGF1R insulin like growth factor 1 receptor acts_upstream_of_or_within ISO (PMID:12101187) MGI PMID:12101187 NCBI chr 1:137,383,623...137,691,038
Ensembl chr 1:137,387,825...137,691,058 		JBrowse link
G IGF2 insulin like growth factor 2 acts_upstream_of_or_within ISO (PMID:12101187) MGI PMID:12101187 NCBI chr 2:1,469,183...1,496,417 JBrowse link
G INSR insulin receptor acts_upstream_of_or_within ISO (PMID:12101187) MGI PMID:12101187 NCBI chr 2:71,797,209...71,939,923
Ensembl chr 2:71,797,204...71,936,104 		JBrowse link
G NR5A2 nuclear receptor subfamily 5 group A member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:22,727,865...22,866,905
Ensembl chr10:22,715,735...22,865,364 		JBrowse link
G PDX1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:5,303,609...5,309,063
Ensembl chr11:5,303,609...5,309,063 		JBrowse link
G PTF1A pancreas associated transcription factor 1a involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:51,817,697...51,820,147
Ensembl chr10:51,817,924...51,819,960 		JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (PMID:20614471) ParkinsonsUK-UCL PMID:20614471 NCBI chr 6:144,242,639...144,529,659
Ensembl chr 6:144,399,926...144,555,880 		JBrowse link
G XBP1 X-box binding protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:46,011,239...46,016,526
Ensembl chr14:46,008,377...46,016,526 		JBrowse link
foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
hindgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FILIP1L filamin A interacting protein 1 like acts_upstream_of_or_within ISO (PMID:26655467) MGI PMID:26655467 NCBI chr13:158,889,362...159,187,491
Ensembl chr13:158,890,433...159,185,774 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:111,683,674...111,718,504
Ensembl chr 3:111,683,669...111,718,970 		JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207 		JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21383503) MGI PMID:21383503 NCBI chr 9:77,509,342...77,549,545 JBrowse link
G CDH1 cadherin 1 acts_upstream_of_or_within ISO (PMID:22766025) MGI PMID:22766025 NCBI chr 6:18,075,487...18,155,986
Ensembl chr 6:18,075,480...18,155,986 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224 		JBrowse link
G IL6ST interleukin 6 cytokine family signal transducer involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:35,101,304...35,151,832
Ensembl chr16:35,101,306...35,192,220 		JBrowse link
G KLF5 KLF transcription factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:45,370,009...45,386,673
Ensembl chr11:45,369,810...45,388,314 		JBrowse link
G LOC100151870 gasdermin-C involved_in ISO (PMID:17350798) UniProt PMID:17350798 NCBI chr 4:10,724,754...10,744,226 JBrowse link
G MIR7-2 microRNA mir-7-2 acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chr10:30,986,180...30,986,288
Ensembl chr10:30,986,180...30,986,288 		JBrowse link
G NKX3-2 NK3 homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:9,179,061...9,183,340
Ensembl chr 8:9,179,232...9,182,892 		JBrowse link
G PRDM1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:72,309,096...72,335,474
Ensembl chr 1:72,311,880...72,335,466 		JBrowse link
G SPDEF SAM pointed domain containing ETS transcription factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:30,515,925...30,538,095
Ensembl chr 7:30,515,925...30,524,470 		JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:40,470,970...40,524,862
Ensembl chr17:40,471,009...40,524,860 		JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:66,044,679...66,067,571
Ensembl chr 5:66,044,686...66,067,377 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:32,811,629...32,924,926
Ensembl chr 9:32,811,226...32,925,606 		JBrowse link
G YIPF6 Yip1 domain family member 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:54,661,771...54,687,988
Ensembl chr  X:54,661,829...54,687,976 		JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:36,990,075...37,150,390
Ensembl chr17:36,990,070...37,150,387 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:14,858,470...14,938,156
Ensembl chr14:14,884,662...14,939,941 		JBrowse link
G GATA5 GATA binding protein 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:61,824,891...61,834,742
Ensembl chr17:61,824,899...61,834,267 		JBrowse link
G GATA6 GATA binding protein 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:107,282,709...107,314,725
Ensembl chr 6:107,282,849...107,314,626 		JBrowse link
G PTK6 protein tyrosine kinase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:62,538,853...62,547,866
Ensembl chr17:62,538,855...62,546,870 		JBrowse link
G SAV1 salvador family WW domain containing protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:180,404,871...180,434,458
Ensembl chr 1:180,406,162...180,434,196 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 9:32,811,629...32,924,926
Ensembl chr 9:32,811,226...32,925,606 		JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1A cyclin dependent kinase inhibitor 1A ISO RGD PMID:20466941 RGD:8662316 NCBI chr 7:32,354,776...32,363,771
Ensembl chr 7:32,354,672...32,363,761 		JBrowse link
G FZD5 frizzled class receptor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,914,009...110,921,353 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:190,625,436...190,673,926
Ensembl chr 1:190,625,244...190,674,845 		JBrowse link
G HOXA5 homeobox A5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:45,429,691...45,432,723
Ensembl chr18:45,421,663...45,432,885 		JBrowse link
G SI sucrase-isomaltase ISO RGD PMID:18313392 RGD:597538476 NCBI chr13:104,296,281...104,379,558
Ensembl chr13:104,296,283...104,379,478 		JBrowse link
G TMIGD1 transmembrane and immunoglobulin domain containing 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:46,411,943...46,429,996
Ensembl chr12:46,411,946...46,430,007 		JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:1260861 RGD:2317427 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,642,381...105,660,578 		JBrowse link
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046 		JBrowse link
G ARG2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chr 7:91,343,987...91,385,911
Ensembl chr 7:91,343,988...91,385,909 		JBrowse link
G ASL argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chr 3:16,637,481...16,646,869
Ensembl chr 3:16,637,481...16,646,867 		JBrowse link
G ASS1 argininosuccinate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr 1:270,531,434...270,586,364
Ensembl chr 1:270,531,589...270,586,364 		JBrowse link
G CASP1 caspase 1, apoptosis-related cysteine peptidase ISO RGD PMID:12396474 RGD:5130192 NCBI chr 9:35,188,066...35,199,364
Ensembl chr 9:35,186,420...35,200,328 		JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr15:113,210,038...113,339,086
Ensembl chr15:113,150,157...113,339,078 		JBrowse link
G CTNNB1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311 		JBrowse link
G DAB1 DAB adaptor protein 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chr 6:154,156,595...155,374,403
Ensembl chr 6:154,936,460...155,374,399 		JBrowse link
G EGFR epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,475,589 		JBrowse link
G FOXF1 forkhead box F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659 		JBrowse link
G LOC110260333 hydroxymethylglutaryl-CoA synthase, mitochondrial-like ISO RGD PMID:8620869 RGD:2326125 NCBI chr 4:101,385,486...101,404,273
Ensembl chr 4:101,385,512...101,443,405 		JBrowse link
G OTC ornithine transcarbamylase ISO RGD PMID:9544996 RGD:4139911 NCBI chr  X:34,322,398...34,391,711
Ensembl chr  X:34,322,298...34,391,821 		JBrowse link
G RELN reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chr 9:103,460,855...103,963,728
Ensembl chr 9:103,460,863...103,963,883 		JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chr 1:273,698,842...273,797,622
Ensembl chr 1:273,705,505...273,797,620 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,743...19,478,898 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207 		JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:131,135,970...131,137,865
Ensembl chr13:131,135,725...131,138,237 		JBrowse link
G NKX6-3 NK6 homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:10,743,350...10,747,596
Ensembl chr17:10,743,318...10,747,384 		JBrowse link
positive regulation of intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TLR9 toll like receptor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:34,353,444...34,370,990
Ensembl chr13:34,349,609...34,357,673 		JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-3 NK2 homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:110,720,384...110,724,002
Ensembl chr14:110,720,394...110,723,995 		JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:50,073,300...50,102,879
Ensembl chr11:50,072,554...50,102,884 		JBrowse link
stomach development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:20,645,002...20,935,769
Ensembl chr 4:20,645,610...20,935,540 		JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:1,675,323...1,989,110
Ensembl chr 2:1,675,360...1,989,111 		JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:81,357,431...81,360,335
Ensembl chr 5:81,358,969...81,359,673 		JBrowse link
G HES1 hes family bHLH transcription factor 1 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr13:131,135,970...131,137,865
Ensembl chr13:131,135,725...131,138,237 		JBrowse link
G NKX6-3 NK6 homeobox 3 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr17:10,743,350...10,747,596
Ensembl chr17:10,743,318...10,747,384 		JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXL1 forkhead box L1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:2,540,748...2,544,978
Ensembl chr 6:2,542,675...2,543,691 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18945
    multicellular organismal process 8794
      multicellular organism development 5152
        system development 4500
          digestive system development 188
            digestive tract development + 173
            exocrine pancreas development 10
Path 2
Term Annotations click to browse term
  biological_process 18945
    developmental process 6804
      anatomical structure development 6384
        multicellular organism development 5152
          system development 4500
            digestive system development 188
              digestive tract development + 173
              exocrine pancreas development 10
paths to the root