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ONTOLOGY REPORT - ANNOTATIONS

Term:digestive system development
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Accession:GO:0055123 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.


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digestive system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BARX1 BARX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:93,951,627...93,955,355
Ensembl chr 9:93,951,627...93,955,355 		JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:2,883,218...2,885,775
Ensembl chr11:2,883,213...2,885,775 		JBrowse link
G CELA1 chymotrypsin like elastase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:51,328,442...51,346,679
Ensembl chr12:51,328,442...51,346,679 		JBrowse link
G GIP gastric inhibitory polypeptide ISO RGD PMID:8674860 RGD:2312540 NCBI chr17:48,958,554...48,968,596
Ensembl chr17:48,958,554...48,968,596 		JBrowse link
G HIP1R huntingtin interacting protein 1 related involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:122,834,748...122,862,961
Ensembl chr12:122,834,453...122,862,961 		JBrowse link
G NKX3-2 NK3 homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:13,540,830...13,547,744
Ensembl chr 4:13,540,830...13,544,508 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:110,617,423...110,642,123
Ensembl chr 4:110,617,423...110,642,123 		JBrowse link
G WDPCP WD repeat containing planar cell polarity effector acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:63,119,559...63,840,826
Ensembl chr 2:63,119,559...63,827,843 		JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:39,182,529...39,285,810
Ensembl chr 4:39,182,504...39,285,810 		JBrowse link
chordate pharynx development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (PMID:12810603) MGI PMID:12810603 NCBI chr 3:184,380,054...184,390,739
Ensembl chr 3:184,380,054...184,390,736 		JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:20,917,407...20,953,747
Ensembl chr22:20,917,407...20,953,747 		JBrowse link
G EDNRB endothelin receptor type B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:77,895,487...77,975,527
Ensembl chr13:77,895,481...77,975,529 		JBrowse link
G FOXE1 forkhead box E1 involved_in IEP (PMID:15494458) UniProt PMID:15494458 NCBI chr 9:97,853,226...97,856,717
Ensembl chr 9:97,853,226...97,856,717 		JBrowse link
cloaca development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
cloacal septation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TP63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:189,596,746...189,897,276
Ensembl chr 3:189,631,389...189,897,276 		JBrowse link
G WNT11 Wnt family member 11 involved_in IEP (PMID:9757009) UniProt PMID:9757009 NCBI chr11:76,186,325...76,210,761
Ensembl chr11:76,186,325...76,210,736 		JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IMP (PMID:22693285) BHF-UCL PMID:22693285 NCBI chr 3:180,614,008...180,679,489
Ensembl chr 3:180,602,858...180,684,942 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IMP (PMID:22693285) BHF-UCL PMID:22693285 NCBI chr17:80,036,642...80,100,613
Ensembl chr17:80,036,632...80,100,613 		JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IMP (PMID:19944405) BHF-UCL PMID:19944405 NCBI chr16:84,145,308...84,177,920
Ensembl chr16:84,145,287...84,178,767 		JBrowse link
G DNAAF19 dynein axonemal assembly factor 19 involved_in IMP (PMID:22581229) BHF-UCL PMID:22581229 NCBI chr17:44,899,729...44,905,390
Ensembl chr17:44,899,142...44,905,390 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within 		ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr19:42,325,635...42,378,765
Ensembl chr19:42,325,609...42,378,769 		JBrowse link
G ZIC3 Zic family member 3 involved_in IMP (PMID:9354794) BHF-UCL PMID:9354794 NCBI chr  X:137,566,127...137,577,691
Ensembl chr  X:137,566,127...137,577,691 		JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IMP (PMID:20007846) BHF-UCL PMID:20007846 NCBI chr 3:132,680,609...132,722,409
Ensembl chr 3:132,680,609...132,722,432 		JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IMP (PMID:18371931) BHF-UCL PMID:18371931 NCBI chr 3:132,680,609...132,722,409
Ensembl chr 3:132,680,609...132,722,432 		JBrowse link
digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:44,260,440...44,310,139
Ensembl chr11:44,260,440...44,310,139 		JBrowse link
G CCKBR cholecystokinin B receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:6,259,838...6,272,127
Ensembl chr11:6,259,806...6,272,127 		JBrowse link
G CCNB1 cyclin B1 involved_in ISO
IEA 		perinatal small intestine RGD
Ensembl		 PMID:17692466 GO_REF:0000107 RGD:2316322 NCBI chr 5:69,167,150...69,178,245
Ensembl chr 5:69,167,135...69,178,245 		JBrowse link
G CD36 CD36 molecule (CD36 blood group) ISO RGD PMID:11595646 RGD:628450 NCBI chr 7:80,602,207...80,679,274
Ensembl chr 7:80,369,575...80,679,277 		JBrowse link
G CDX1 caudal type homeobox 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:150,166,778...150,184,558
Ensembl chr 5:150,166,778...150,184,558 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:27,960,918...27,969,315
Ensembl chr13:27,960,918...27,969,315 		JBrowse link
G CDX4 caudal type homeobox 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:73,447,053...73,455,171
Ensembl chr  X:73,447,053...73,455,171 		JBrowse link
G CHD8 chromodomain helicase DNA binding protein 8 involved_in
acts_upstream_of_or_within 		IMP
IEA
IBA 		(PMID:24998929) GO_Central
Ensembl		 PMID:24998929 GO_REF:0000033 GO_REF:0000107 NCBI chr14:21,385,199...21,456,123
Ensembl chr14:21,385,194...21,456,126 		JBrowse link
G CKMT1B creatine kinase, mitochondrial 1B ISO RGD PMID:8086475 RGD:11565082 NCBI chr15:43,592,857...43,599,406
Ensembl chr15:43,593,054...43,604,901
Ensembl chr15:43,593,054...43,604,901 		JBrowse link
G CLDN18 claudin 18 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:137,998,816...138,033,649
Ensembl chr 3:137,998,735...138,033,655 		JBrowse link
G CLMP CXADR like membrane protein involved_in IMP (PMID:22155368) UniProt PMID:22155368 NCBI chr11:123,069,872...123,195,248
Ensembl chr11:123,069,872...123,195,291 		JBrowse link
G COBL cordon-bleu WH2 repeat protein involved_in IEA
ISS 		Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:51,016,212...51,316,809
Ensembl chr 7:51,016,212...51,316,818 		JBrowse link
G COL3A1 collagen type III alpha 1 chain acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:20587693) Ensembl
MGI		 PMID:20587693 GO_REF:0000107 NCBI chr 2:188,974,373...189,012,746
Ensembl chr 2:188,974,373...189,012,746 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in ISO
IEA 		RGD
Ensembl		 PMID:12162855 GO_REF:0000107 RGD:727721 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536 		JBrowse link
G DCHS1 dachsous cadherin-related 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:6,621,330...6,655,809
Ensembl chr11:6,621,330...6,655,809 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chr14:95,086,228...95,158,010
Ensembl chr14:95,086,228...95,158,010 		JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:17916272 RGD:2312267 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,510...41,180,077 		JBrowse link
G FAT4 FAT atypical cadherin 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:125,314,955...125,492,932
Ensembl chr 4:125,314,918...125,492,932 		JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:44,300,247...44,389,420
Ensembl chr 5:44,300,247...44,389,706 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		(PMID:15234214) UniProt
MGI		 PMID:15234214 GO_REF:0000024 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458 		JBrowse link
G FOXF1 forkhead box F1 involved_in IMP (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422 		JBrowse link
G HRH2 histamine receptor H2 acts_upstream_of_or_within ISO (PMID:15476751)
(PMID:10862789) 		MGI PMID:10862789 PMID:15476751 NCBI chr 5:175,658,071...175,710,756
Ensembl chr 5:175,658,030...175,710,756 		JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in IEA
ISS 		Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:54,657,957...54,740,715
Ensembl chr 4:54,657,267...54,740,783 		JBrowse link
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:27,365,961...27,472,790
Ensembl chr11:27,365,961...27,472,790 		JBrowse link
G MIXL1 Mix paired-like homeobox involved_in
acts_upstream_of_or_within 		ISS
IEA 		BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:226,223,664...226,227,060
Ensembl chr 1:226,223,618...226,227,060 		JBrowse link
G MUC19 mucin 19, oligomeric (gene/pseudogene) acts_upstream_of_or_within ISO (PMID:37475871) MGI PMID:37475871 NCBI chr12:40,393,394...40,570,757
Ensembl chr12:40,393,395...40,570,832 		JBrowse link
G MUC4 mucin 4, cell surface associated ISO RGD PMID:15389518 RGD:2303738 NCBI chr 3:195,746,771...195,811,929
Ensembl chr 3:195,746,765...195,811,973 		JBrowse link
G MYOCD myocardin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:12,665,890...12,768,949
Ensembl chr17:12,665,890...12,768,949 		JBrowse link
G NAT2 N-acetyltransferase 2 ISO RGD PMID:18799802 RGD:2303764 NCBI chr 8:18,386,301...18,401,218
Ensembl chr 8:18,391,282...18,401,218 		JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 acts_upstream_of_or_within ISO (PMID:36720308) MGI PMID:36720308 NCBI chr 2:177,230,303...177,264,727
Ensembl chr 2:177,218,667...177,392,756 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:36,876,769...37,066,413
Ensembl chr 5:36,876,769...37,066,413 		JBrowse link
G NKX2-2 NK2 homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:21,511,017...21,522,689
Ensembl chr20:21,511,017...21,514,064 		JBrowse link
G NKX2-3 NK2 homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:99,532,942...99,536,524
Ensembl chr10:99,532,942...99,536,524 		JBrowse link
G NKX2-6 NK2 homeobox 6 involved_in IEA
ISS 		Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:23,701,740...23,706,756
Ensembl chr 8:23,701,740...23,706,756 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,791,591...35,809,731
Ensembl chr 9:35,791,003...35,809,732 		JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 ISO intestine RGD PMID:17341476 RGD:401827282 NCBI chr11:47,248,300...47,269,033
Ensembl chr11:47,248,300...47,269,033 		JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chr12:100,473,866...100,564,414
Ensembl chr12:100,473,708...100,564,414 		JBrowse link
G NTS neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chr12:85,874,295...85,882,992
Ensembl chr12:85,874,295...85,882,992 		JBrowse link
G OXTR oxytocin receptor ISO RGD PMID:19003903 RGD:2303961 NCBI chr 3:8,741,269...8,769,613
Ensembl chr 3:8,750,381...8,769,628 		JBrowse link
G PDGFA platelet derived growth factor subunit A acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:23938297) MGI
Ensembl		 PMID:23938297 GO_REF:0000107 NCBI chr 7:497,258...520,700
Ensembl chr 7:497,258...520,296 		JBrowse link
G PDGFC platelet derived growth factor C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:156,760,454...156,971,799
Ensembl chr 4:156,760,454...156,971,799 		JBrowse link
G PDX1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:27,920,000...27,926,313
Ensembl chr13:27,920,000...27,926,313 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in IEP (PMID:11891195) UniProt PMID:11891195 NCBI chr16:2,088,708...2,135,898
Ensembl chr16:2,088,708...2,135,898 		JBrowse link
G RB1 RB transcriptional corepressor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:48,303,751...48,481,890
Ensembl chr13:48,303,744...48,599,436 		JBrowse link
G RCBTB2 RCC1 and BTB domain containing protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:48,488,963...48,535,895
Ensembl chr13:48,488,963...48,533,256 		JBrowse link
G SLC4A2 solute carrier family 4 member 2 involved_in ISO
IEA 		RGD
Ensembl		 PMID:8770049 GO_REF:0000107 RGD:9999233 NCBI chr 7:151,058,200...151,076,527
Ensembl chr 7:151,057,210...151,076,526 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:129,188,633...129,213,545
Ensembl chr 7:129,188,633...129,213,545 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISO
IEA 		RGD
Ensembl		 PMID:12815632 GO_REF:0000107 RGD:2302031 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922 		JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619 		JBrowse link
G TGFB3 transforming growth factor beta 3 ISO RGD PMID:12815632 RGD:2302031 NCBI chr14:75,958,097...75,983,011
Ensembl chr14:75,958,097...75,983,011 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 9:99,103,647...99,154,192
Ensembl chr 9:99,104,038...99,154,192 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 3:30,606,356...30,694,142
Ensembl chr 3:30,606,478...30,694,249 		JBrowse link
G THRA thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chr17:40,062,193...40,093,867
Ensembl chr17:40,058,290...40,093,867 		JBrowse link
G TK1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chr17:78,174,079...78,187,204
Ensembl chr17:78,174,091...78,187,233 		JBrowse link
G UGT1A1 UDP glucuronosyltransferase family 1 member A1 acts_upstream_of_or_within ISO (PMID:36720308) MGI PMID:36720308 NCBI chr 2:233,760,270...233,773,300
Ensembl chr 2:233,760,270...233,773,300 		JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGR2 anterior gradient 2, protein disulphide isomerase family member involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:16,791,811...16,804,999
Ensembl chr 7:16,791,811...16,833,433 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 4:121,824,329...121,870,474
Ensembl chr 4:121,824,329...121,870,487 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:63,123,346...63,320,090
Ensembl chr18:63,123,346...63,320,128 		JBrowse link
G CFC1B cryptic, EGF-CFC family member 1B acts_upstream_of_or_within ISO (PMID:10521397) MGI PMID:10521397 NCBI chr 2:130,521,222...130,528,603
Ensembl chr 2:130,521,197...130,528,604 		JBrowse link
G EGFR epidermal growth factor receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:55,019,017...55,211,628
Ensembl chr 7:55,019,017...55,211,628 		JBrowse link
G EPHB3 EPH receptor B3 involved_in IEA
ISS 		Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:184,561,785...184,582,408
Ensembl chr 3:184,561,785...184,582,408 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:19407216) MGI PMID:19407216 NCBI chr 4:1,793,293...1,808,867
Ensembl chr 4:1,793,293...1,808,872 		JBrowse link
G GLI1 GLI family zinc finger 1 involved_in TAS (PMID:11001584) BHF-UCL PMID:11001584 NCBI chr12:57,459,785...57,472,268
Ensembl chr12:57,459,785...57,472,268 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259 		JBrowse link
G IL18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chr11:112,143,260...112,164,094
Ensembl chr11:112,143,251...112,164,096 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,791,591...35,809,731
Ensembl chr 9:35,791,003...35,809,732 		JBrowse link
G PERCC1 proline and glutamate rich with coiled coil 1 involved_in IEA
ISS 		Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr16:1,431,078...1,434,441
Ensembl chr16:1,431,078...1,434,441 		JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083 		JBrowse link
G SFRP5 secreted frizzled related protein 5 involved_in
acts_upstream_of_or_within 		IMP
ISO 		(PMID:18981481)
(PMID:19300477) 		BHF-UCL
MGI		 PMID:18981481 PMID:19300477 NCBI chr10:97,766,751...97,771,999
Ensembl chr10:97,766,751...97,771,999 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G SOX10 SRY-box transcription factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:37,972,312...37,984,555
Ensembl chr22:37,970,686...37,987,422 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in IMP (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:74,179,466...74,212,259
Ensembl chr15:74,179,466...74,212,267 		JBrowse link
G STX2 syntaxin 2 ISO RGD PMID:12464668 RGD:1298909 NCBI chr12:130,789,600...130,839,250
Ensembl chr12:130,789,600...130,839,254 		JBrowse link
G TP73 tumor protein p73 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:3,652,516...3,736,201
Ensembl chr 1:3,652,516...3,736,201 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:160,400,564...160,428,670
Ensembl chr 1:160,400,564...160,428,678 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539 		JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:44,619,522...44,651,699
Ensembl chr20:44,584,896...44,652,252 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866 		JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 involved_in IEP (PMID:20875417) DFLAT PMID:20875417 NCBI chr 4:73,740,569...73,743,716
Ensembl chr 4:73,740,519...73,743,716 		JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:44,300,247...44,389,420
Ensembl chr 5:44,300,247...44,389,706 		JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:21,671,073...21,704,498
Ensembl chr13:21,671,073...21,704,498 		JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422 		JBrowse link
G FOXF2 forkhead box F2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:1,389,576...1,395,603
Ensembl chr 6:1,389,576...1,395,603 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within 		ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within 		TAS
IEA 		(PMID:11001584) BHF-UCL
Ensembl		 PMID:11001584 GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100 		JBrowse link
G MYB MYB proto-oncogene, transcription factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:135,181,308...135,219,172
Ensembl chr 6:135,181,308...135,219,173 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in ISS
IEA
IMP 		(PMID:8940009)
(PMID:18519639) 		BHF-UCL
Ensembl		 PMID:8940009 PMID:18519639 GO_REF:0000107 NCBI chr 9:75,889,809...76,362,975
Ensembl chr 9:75,890,644...76,362,975 		JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:42,048,021...42,058,517
Ensembl chr 2:42,048,021...42,058,517 		JBrowse link
G RARB retinoic acid receptor beta involved_in IMP (PMID:19443732) DFLAT PMID:19443732 NCBI chr 3:24,829,321...25,597,932
Ensembl chr 3:24,687,887...25,597,932 		JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IMP (PMID:19443732) DFLAT PMID:19443732 NCBI chr 7:150,338,329...150,341,629
Ensembl chr 7:150,338,317...150,341,662 		JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IMP (PMID:18280297) UniProt PMID:18280297 NCBI chr16:51,135,982...51,152,334
Ensembl chr16:51,135,982...51,152,334 		JBrowse link
G SCT secretin involved_in ISO
IEA 		RGD
Ensembl		 PMID:1711228 GO_REF:0000107 RGD:729899 NCBI chr11:626,309...627,181
Ensembl chr11:626,309...627,181 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in IMP (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:74,179,466...74,212,259
Ensembl chr15:74,179,466...74,212,267 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IEP (PMID:20875417) DFLAT PMID:20875417 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619 		JBrowse link
G TNF tumor necrosis factor involved_in IEP (PMID:20875417) DFLAT PMID:20875417 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336 		JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:44,300,247...44,389,420
Ensembl chr 5:44,300,247...44,389,706 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		(PMID:16618415), (PMID:21492869)
(PMID:21550054) 		UniProt
MGI		 PMID:16618415 PMID:21492869 PMID:21550054 GO_REF:0000024 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458 		JBrowse link
G FOXF1 forkhead box F1 involved_in IMP (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16127717) MGI PMID:16127717 NCBI chr 8:11,676,935...11,760,002
Ensembl chr 8:11,676,959...11,760,002 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100 		JBrowse link
G HLX H2.0 like homeobox acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:220,879,443...220,885,059
Ensembl chr 1:220,879,431...220,885,059 		JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:37,686,431...37,745,059
Ensembl chr17:37,686,431...37,745,059 		JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:8,682,056...8,684,461
Ensembl chr 2:8,678,845...8,684,461 		JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IMP (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chr 5:36,876,769...37,066,413
Ensembl chr 5:36,876,769...37,066,413 		JBrowse link
G OVOL2 ovo like zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:18,024,152...18,059,188
Ensembl chr20:17,956,979...18,059,188 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:54,229,293...54,298,245
Ensembl chr 4:54,229,280...54,298,245 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:110,617,423...110,642,123
Ensembl chr 4:110,617,423...110,642,123 		JBrowse link
G RBPMS2 RNA binding protein, mRNA processing factor 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr15:64,739,891...64,775,589
Ensembl chr15:64,739,891...64,775,589 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G SHOX2 SHOX homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:158,095,905...158,106,420
Ensembl chr 3:158,095,905...158,106,420 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA
ISS 		Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:45,005,182...45,009,452
Ensembl chr 2:45,005,182...45,009,452 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in IEA
ISS 		Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:5,692,384...5,701,385
Ensembl chr 2:5,692,384...5,701,385 		JBrowse link
G TCF21 transcription factor 21 involved_in ISO
IEA
ISS 		RGD
Ensembl
UniProt		 PMID:11804032 GO_REF:0000024 GO_REF:0000107 RGD:727206 NCBI chr 6:133,889,113...133,895,537
Ensembl chr 6:133,889,113...133,895,553 		JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr 5:134,108,218...134,148,210
Ensembl chr 5:134,114,681...134,151,865 		JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr10:112,950,247...113,167,678
Ensembl chr10:112,950,247...113,167,678 		JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS52 VPS52 subunit of GARP complex acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:33,250,272...33,271,965
Ensembl chr 6:33,250,272...33,272,047 		JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in IMP (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422 		JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:38,453,890...38,493,142
Ensembl chr 3:38,453,890...38,493,142 		JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:41,199,505...41,240,443
Ensembl chr 3:41,194,741...41,260,096 		JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:120,013,077...120,179,119
Ensembl chr 2:120,013,077...120,179,119 		JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422 		JBrowse link
G FOXP4 forkhead box P4 acts_upstream_of_or_within ISO (PMID:15361625) MGI PMID:15361625 NCBI chr 6:41,546,381...41,602,384
Ensembl chr 6:41,546,381...41,602,384 		JBrowse link
G GATA4 GATA binding protein 4 involved_in
acts_upstream_of_or_within 		ISS
ISO 		(PMID:9136933)
(PMID:9136932) 		BHF-UCL
MGI		 PMID:9136932 PMID:9136933 GO_REF:0000024 NCBI chr 8:11,676,935...11,760,002
Ensembl chr 8:11,676,959...11,760,002 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:47,808,957...47,930,872
Ensembl chr18:47,808,957...47,931,146 		JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:67,065,602...67,195,169
Ensembl chr15:67,063,763...67,195,173 		JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within 		ISS
IEA 		BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892 		JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DACT1 dishevelled binding antagonist of beta catenin 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr14:58,634,061...58,648,321
Ensembl chr14:58,633,967...58,648,321 		JBrowse link
G HOXA13 homeobox A13 involved_in ISO
IEA 		RGD
Ensembl		 PMID:17161201 GO_REF:0000107 RGD:1599527 NCBI chr 7:27,194,364...27,200,091
Ensembl chr 7:27,193,503...27,200,091 		JBrowse link
G HOXD13 homeobox D13 involved_in ISO
IEA 		RGD
Ensembl		 PMID:17161201 GO_REF:0000107 RGD:1599527 NCBI chr 2:176,087,487...176,095,944
Ensembl chr 2:176,092,721...176,095,944 		JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr 5:134,108,218...134,148,210
Ensembl chr 5:134,114,681...134,151,865 		JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chr10:112,950,247...113,167,678
Ensembl chr10:112,950,247...113,167,678 		JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458 		JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:8,682,056...8,684,461
Ensembl chr 2:8,678,845...8,684,461 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:110,617,423...110,642,123
Ensembl chr 4:110,617,423...110,642,123 		JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in IEA
ISS 		Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892 		JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B involved_in ISS
IEA 		BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr13:77,895,487...77,975,527
Ensembl chr13:77,895,481...77,975,529 		JBrowse link
enterocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G YAP1 Yes1 associated transcriptional regulator acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr11:102,110,447...102,233,424
Ensembl chr11:102,110,447...102,233,424 		JBrowse link
exocrine pancreas development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELA1 chymotrypsin like elastase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:51,328,442...51,346,679
Ensembl chr12:51,328,442...51,346,679 		JBrowse link
G IGF1 insulin like growth factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:102,395,874...102,481,839
Ensembl chr12:102,395,874...102,481,744 		JBrowse link
G IGF1R insulin like growth factor 1 receptor acts_upstream_of_or_within ISO (PMID:12101187) MGI PMID:12101187 NCBI chr15:98,648,539...98,964,530
Ensembl chr15:98,648,539...98,964,530 		JBrowse link
G IGF2 insulin like growth factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:2,129,117...2,149,566
Ensembl chr11:2,129,112...2,158,391 		JBrowse link
G INSR insulin receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:7,112,265...7,294,414
Ensembl chr19:7,112,255...7,294,414 		JBrowse link
G NR5A2 nuclear receptor subfamily 5 group A member 2 involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:200,027,710...200,177,415
Ensembl chr 1:200,027,614...200,177,420 		JBrowse link
G PDX1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:27,920,000...27,926,313
Ensembl chr13:27,920,000...27,926,313 		JBrowse link
G PTF1A pancreas associated transcription factor 1a involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:23,192,312...23,194,245
Ensembl chr10:23,192,312...23,194,245 		JBrowse link
G SRP54 signal recognition particle 54 involved_in ISS UniProt GO_REF:0000024 NCBI chr14:34,982,992...35,029,567
Ensembl chr14:34,981,957...35,029,686 		JBrowse link
G WLS Wnt ligand secretion mediator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:68,098,459...68,232,546
Ensembl chr 1:68,098,473...68,233,120 		JBrowse link
G XBP1 X-box binding protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:28,794,560...28,800,569
Ensembl chr22:28,794,555...28,800,597 		JBrowse link
foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048 		JBrowse link
hindgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FILIP1L filamin A interacting protein 1 like acts_upstream_of_or_within ISO (PMID:26655467) MGI PMID:26655467 NCBI chr 3:99,828,811...100,114,501
Ensembl chr 3:99,828,811...100,114,513 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:27,444,377...27,489,743
Ensembl chr 2:27,444,377...27,489,805 		JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within 		ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539 		JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:7,157,377...7,248,616
Ensembl chr 7:7,156,934...7,248,616 		JBrowse link
G CDH1 cadherin 1 acts_upstream_of_or_within ISO (PMID:22766025) MGI PMID:22766025 NCBI chr16:68,737,292...68,835,537
Ensembl chr16:68,737,292...68,835,537 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chr14:95,086,228...95,158,010
Ensembl chr14:95,086,228...95,158,010 		JBrowse link
G GSDMC gasdermin C involved_in ISO (PMID:17350798) UniProt PMID:17350798 NCBI chr 8:129,705,435...129,786,624
Ensembl chr 8:129,748,196...129,786,624 		JBrowse link
G IL6ST interleukin 6 cytokine family signal transducer involved_in IDA
IEA 		(PMID:25731159) UniProt
Ensembl		 PMID:25731159 GO_REF:0000107 NCBI chr 5:55,935,095...55,994,963
Ensembl chr 5:55,935,095...55,995,022 		JBrowse link
G KLF5 KLF transcription factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:73,054,976...73,077,538
Ensembl chr13:73,054,976...73,077,541 		JBrowse link
G MIR203B microRNA 203b acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chr14:104,117,418...104,117,503
Ensembl chr14:104,117,418...104,117,503 		JBrowse link
G MIR7-1 microRNA 7-1 acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chr 9:83,969,748...83,969,857
Ensembl chr 9:83,969,748...83,969,857 		JBrowse link
G NKX3-2 NK3 homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:13,540,830...13,547,744
Ensembl chr 4:13,540,830...13,544,508 		JBrowse link
G PRDM1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:105,992,690...106,109,938
Ensembl chr 6:105,993,463...106,109,939 		JBrowse link
G SPDEF SAM pointed domain containing ETS transcription factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:34,537,802...34,556,329
Ensembl chr 6:34,537,802...34,556,333 		JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in IDA
IEA 		(PMID:25731159) UniProt
Ensembl		 PMID:25731159 GO_REF:0000107 NCBI chr20:37,344,699...37,406,050
Ensembl chr20:37,344,685...37,406,050 		JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:4,321,213...4,360,028
Ensembl chr12:4,307,763...4,360,028 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:102,110,447...102,233,424
Ensembl chr11:102,110,447...102,233,424 		JBrowse link
G YIPF6 Yip1 domain family member 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:68,499,051...68,537,282
Ensembl chr  X:68,498,562...68,537,282 		JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:33,490,096...33,650,030
Ensembl chr20:33,490,075...33,650,036 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr13:27,960,918...27,969,315
Ensembl chr13:27,960,918...27,969,315 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within IDA (PMID:9566909) MGI PMID:9566909 NCBI chr 8:11,676,935...11,760,002
Ensembl chr 8:11,676,959...11,760,002 		JBrowse link
G GATA5 GATA binding protein 5 acts_upstream_of_or_within IDA (PMID:9566909) MGI PMID:9566909 NCBI chr20:62,463,497...62,475,995
Ensembl chr20:62,463,497...62,475,995 		JBrowse link
G GATA6 GATA binding protein 6 acts_upstream_of_or_within IDA (PMID:9566909) MGI PMID:9566909 NCBI chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528 		JBrowse link
G NPY neuropeptide Y involved_in TAS (PMID:10488139) GO_Central PMID:10488139 NCBI chr 7:24,284,190...24,291,862
Ensembl chr 7:24,284,188...24,291,862 		JBrowse link
G PTK6 protein tyrosine kinase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:63,528,001...63,537,376
Ensembl chr20:63,528,001...63,537,376 		JBrowse link
G PYY peptide YY involved_in TAS (PMID:10488139) GO_Central PMID:10488139 NCBI chr17:43,952,733...44,004,445
Ensembl chr17:43,952,733...44,004,469 		JBrowse link
G SAV1 salvador family WW domain containing protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:50,633,580...50,668,306
Ensembl chr14:50,632,058...50,668,306 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr11:102,110,447...102,233,424
Ensembl chr11:102,110,447...102,233,424 		JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1A cyclin dependent kinase inhibitor 1A ISO RGD PMID:20466941 RGD:8662316 NCBI chr 6:36,676,463...36,687,332
Ensembl chr 6:36,676,460...36,687,397 		JBrowse link
G FZD5 frizzled class receptor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:207,762,598...207,769,906
Ensembl chr 2:207,762,598...207,769,906 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259 		JBrowse link
G HOXA5 homeobox A5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:27,141,052...27,143,681
Ensembl chr 7:27,141,052...27,143,681 		JBrowse link
G SI sucrase-isomaltase ISO RGD PMID:18313392 RGD:597538476 NCBI chr 3:164,978,898...165,090,232
Ensembl chr 3:164,978,898...165,078,496 		JBrowse link
G TMIGD1 transmembrane and immunoglobulin domain containing 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:30,316,333...30,334,057
Ensembl chr17:30,316,333...30,334,059 		JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:1260861 RGD:2317427 NCBI chr18:657,653...673,578
Ensembl chr18:657,653...673,578 		JBrowse link
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA 		RGD
Ensembl		 PMID:15964596 GO_REF:0000107 RGD:1643113 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866 		JBrowse link
G ARG2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chr14:67,619,920...67,651,708
Ensembl chr14:67,619,920...67,651,708 		JBrowse link
G ASL argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chr 7:66,075,819...66,093,576
Ensembl chr 7:66,075,800...66,094,697 		JBrowse link
G ASS1 argininosuccinate synthase 1 involved_in ISO
IEA 		RGD
Ensembl		 PMID:9544996 GO_REF:0000107 RGD:4139911 NCBI chr 9:130,444,707...130,501,274
Ensembl chr 9:130,444,961...130,501,274 		JBrowse link
G CASP1 caspase 1 ISO RGD PMID:12396474 RGD:5130192 NCBI chr11:105,025,443...105,036,686
Ensembl chr11:105,025,397...105,035,250 		JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 involved_in ISO
IEA 		RGD
Ensembl		 PMID:9544996 GO_REF:0000107 RGD:4139911 NCBI chr 2:210,477,685...210,679,107
Ensembl chr 2:210,477,682...210,679,107 		JBrowse link
G CTNNB1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chr 3:41,199,505...41,240,443
Ensembl chr 3:41,194,741...41,260,096 		JBrowse link
G DAB1 DAB adaptor protein 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chr 1:56,994,778...58,546,726
Ensembl chr 1:56,994,778...58,546,734 		JBrowse link
G EGFR epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chr 7:55,019,017...55,211,628
Ensembl chr 7:55,019,017...55,211,628 		JBrowse link
G FOXF1 forkhead box F1 involved_in IMP (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422 		JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in ISO
IEA 		RGD
Ensembl		 PMID:8620869 GO_REF:0000107 RGD:2326125 NCBI chr 1:119,747,996...119,768,932
Ensembl chr 1:119,748,002...119,768,905 		JBrowse link
G OTC ornithine transcarbamylase involved_in ISO
IEA 		RGD
Ensembl		 PMID:9544996 GO_REF:0000107 RGD:4139911 NCBI chr  X:38,327,684...38,422,928
Ensembl chr  X:38,327,598...38,422,908 		JBrowse link
G REG1A regenerating family member 1 alpha ISO RGD PMID:7720628 RGD:9850133 NCBI chr 2:79,120,488...79,123,409
Ensembl chr 2:79,120,362...79,123,409 		JBrowse link
G REG3A regenerating family member 3 alpha ISO RGD PMID:7720628 RGD:9850133 NCBI chr 2:79,157,006...79,159,753
Ensembl chr 2:79,157,003...79,159,753 		JBrowse link
G RELN reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chr 7:103,471,789...103,989,658
Ensembl chr 7:103,471,381...103,989,658 		JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chr 9:134,326,455...134,440,585
Ensembl chr 9:134,317,098...134,440,585 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in ISS
IEA 		BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:129,188,633...129,213,545
Ensembl chr 7:129,188,633...129,213,545 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539 		JBrowse link
negative regulation of intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR29B1 microRNA 29b-1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 7:130,877,459...130,877,539
Ensembl chr 7:130,877,459...130,877,539 		JBrowse link
G MIR29B2 microRNA 29b-2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 1:207,802,443...207,802,523
Ensembl chr 1:207,802,443...207,802,523 		JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:194,136,148...194,138,732
Ensembl chr 3:194,136,148...194,138,732 		JBrowse link
G NKX6-3 NK6 homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:41,645,177...41,650,817
Ensembl chr 8:41,645,177...41,650,817 		JBrowse link
positive regulation of intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TLR9 toll like receptor 9 involved_in IEA
ISS 		Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:52,221,080...52,225,645
Ensembl chr 3:52,221,080...52,225,645 		JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-3 NK2 homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:99,532,942...99,536,524
Ensembl chr10:99,532,942...99,536,524 		JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:77,895,487...77,975,527
Ensembl chr13:77,895,481...77,975,529 		JBrowse link
G RET ret proto-oncogene involved_in TAS (PMID:8114939) PINC PMID:8114939 NCBI chr10:43,077,069...43,130,351
Ensembl chr10:43,077,064...43,130,351 		JBrowse link
stomach development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:117,794,490...118,111,826
Ensembl chr 8:117,794,490...118,111,826 		JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:2,445,008...2,849,105
Ensembl chr11:2,444,654...2,849,105 		JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:102,957,674...102,960,513
Ensembl chr12:102,957,674...102,960,513 		JBrowse link
G HES1 hes family bHLH transcription factor 1 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 3:194,136,148...194,138,732
Ensembl chr 3:194,136,148...194,138,732 		JBrowse link
G NKX6-3 NK6 homeobox 3 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 8:41,645,177...41,650,817
Ensembl chr 8:41,645,177...41,650,817 		JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXL1 forkhead box L1 involved_in
acts_upstream_of_or_within 		ISS
IEA 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr16:86,578,549...86,583,478
Ensembl chr16:86,576,368...86,583,478 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 27207
    multicellular organismal process 8856
      multicellular organism development 5709
        system development 4983
          digestive system development 203
            digestive tract development + 187
            exocrine pancreas development 11
Path 2
Term Annotations click to browse term
  biological_process 27207
    developmental process 7772
      anatomical structure development 7154
        multicellular organism development 5709
          system development 4983
            digestive system development 203
              digestive tract development + 187
              exocrine pancreas development 11
paths to the root