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ONTOLOGY REPORT - ANNOTATIONS

Term:digestive system development
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Accession:GO:0055123 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.

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digestive system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barx1 BARX homeobox 1 acts_upstream_of_or_within ISO (PMID:19208343) MGI PMID:19208343 NCBI chrNW_004955515:4,230,713...4,234,189
Ensembl chrNW_004955515:4,229,783...4,234,191 		JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (PMID:19276117) MGI PMID:19276117 NCBI chrNW_004955422:14,576,971...14,578,868 JBrowse link
G Cela1 chymotrypsin like elastase 1 acts_upstream_of_or_within ISO (PMID:17222338) MGI PMID:17222338 NCBI chrNW_004955547:1,810,680...1,823,938
Ensembl chrNW_004955547:1,810,670...1,824,409 		JBrowse link
G Gip gastric inhibitory polypeptide ISO RGD PMID:8674860 RGD:2312540 NCBI chrNW_004955451:12,390,938...12,396,599 JBrowse link
G Hip1r huntingtin interacting protein 1 related involved_in ISO (PMID:18535670) ParkinsonsUK-UCL PMID:18535670 NCBI chrNW_004955482:5,885,807...5,896,386
Ensembl chrNW_004955482:5,884,839...5,896,389 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO (PMID:19208343) MGI PMID:19208343 NCBI chrNW_004955480:10,212,929...10,215,814
Ensembl chrNW_004955480:10,213,761...10,216,860 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:11493526) MGI PMID:11493526 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004955424:20,723,592...21,114,801 JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004955443:8,053,847...8,122,918
Ensembl chrNW_004955443:8,053,847...8,123,110 		JBrowse link
chordate pharynx development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:12810603) MGI PMID:12810603 NCBI chrNW_004955420:23,111,690...23,120,038
Ensembl chrNW_004955420:23,112,093...23,120,036 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (PMID:25565927) MGI PMID:25565927 NCBI chrNW_004955442:19,358,202...19,388,552
Ensembl chrNW_004955442:19,358,081...19,388,815 		JBrowse link
G Ednrb endothelin receptor type B involved_in ISO (PMID:18199583) MGI PMID:18199583 NCBI chrNW_004955404:29,394,253...29,425,358
Ensembl chrNW_004955404:29,394,164...29,425,358 		JBrowse link
G Foxe1 forkhead box E1 involved_in ISO (PMID:15494458) UniProt PMID:15494458 NCBI chrNW_004955419:27,616,606...27,619,908 JBrowse link
cloacal septation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO (PMID:12368184) MGI PMID:12368184 NCBI chrNW_004955420:18,178,639...18,384,786
Ensembl chrNW_004955420:18,176,155...18,384,786 		JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:9757009) UniProt PMID:9757009 NCBI chrNW_004955414:15,674,478...15,694,758
Ensembl chrNW_004955414:15,674,940...15,694,883 		JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004955420:9,689,076...9,727,806
Ensembl chrNW_004955420:9,690,295...9,727,835 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004955506:2,783,837...2,840,248
Ensembl chrNW_004955506:2,784,548...2,838,026 		JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chrNW_004955564:132,497...149,399
Ensembl chrNW_004955564:132,760...149,399 		JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO (PMID:22581229) BHF-UCL PMID:22581229 NCBI chrNW_004955451:17,690,148...17,693,285
Ensembl chrNW_004955451:17,690,368...17,693,285 		JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:18043505) MGI PMID:18043505 NCBI chrNW_004955555:549,921...591,978
Ensembl chrNW_004955555:548,416...591,978 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) BHF-UCL PMID:9354794 NCBI chrNW_004955489:7,560,684...7,571,739
Ensembl chrNW_004955489:7,560,684...7,571,892 		JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chrNW_004955501:5,799,879...5,837,022
Ensembl chrNW_004955501:5,799,879...5,837,022 		JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chrNW_004955501:5,799,879...5,837,022
Ensembl chrNW_004955501:5,799,879...5,837,022 		JBrowse link
digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004955422:3,278,615...3,290,799
Ensembl chrNW_004955422:3,278,615...3,291,714 		JBrowse link
G Cckbr cholecystokinin B receptor acts_upstream_of_or_within ISO (PMID:15476751) MGI PMID:15476751 NCBI chrNW_004955414:22,001,351...22,011,275
Ensembl chrNW_004955414:22,000,436...22,011,433 		JBrowse link
G Ccnb1 cyclin B1 ISO perinatal small intestine RGD PMID:17692466 RGD:2316322 NCBI chrNW_004955446:140,661...149,500
Ensembl chrNW_004955446:140,093...149,500 		JBrowse link
G Cd36 CD36 molecule (CD36 blood group) ISO RGD PMID:11595646 RGD:628450 NCBI chrNW_004955410:5,003,720...5,120,903
Ensembl chrNW_004955410:5,003,668...5,075,313 		JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in
acts_upstream_of_or_within 		ISO (PMID:24998929)
(PMID:27602517) 		GO_Central
MGI		 PMID:24998929 PMID:27602517 NCBI chrNW_004955550:2,115,649...2,175,687
Ensembl chrNW_004955550:2,115,649...2,175,181 		JBrowse link
G Cldn18 claudin 18 acts_upstream_of_or_within ISO (PMID:22437732) MGI PMID:22437732 NCBI chrNW_004955501:962,188...991,922
Ensembl chrNW_004955501:962,188...991,922 		JBrowse link
G Clmp CXADR like membrane protein involved_in ISO (PMID:22155368) UniProt PMID:22155368 NCBI chrNW_004955412:23,876,003...23,984,603
Ensembl chrNW_004955412:23,876,003...23,970,119 		JBrowse link
G Col3a1 collagen type III alpha 1 chain acts_upstream_of_or_within
involved_in 		ISO (PMID:9050868)
(PMID:20587693) 		MGI PMID:9050868 PMID:20587693 NCBI chrNW_004955403:9,720,831...9,758,019
Ensembl chrNW_004955403:9,721,114...9,757,887 		JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chrNW_004955414:22,331,590...22,365,761
Ensembl chrNW_004955414:22,332,059...22,351,576 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:17916272 RGD:2312267 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933 		JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chrNW_004955428:15,621,333...15,812,167
Ensembl chrNW_004955428:15,622,498...15,810,896 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:15234214) MGI PMID:15234214 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:15234214) MGI PMID:15234214 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Hrh2 histamine receptor H2 acts_upstream_of_or_within ISO (PMID:10862789)
(PMID:15476751) 		MGI PMID:10862789 PMID:15476751 NCBI chrNW_004955408:28,186,316...28,225,146
Ensembl chrNW_004955408:28,186,249...28,229,411 		JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase involved_in ISO (PMID:15067126) UniProt PMID:15067126 NCBI chrNW_004955447:16,149,014...16,226,151
Ensembl chrNW_004955447:16,148,605...16,226,734 		JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 acts_upstream_of_or_within ISO (PMID:24680895) MGI PMID:24680895 NCBI chrNW_004955476:6,611,102...6,629,294
Ensembl chrNW_004955476:6,610,103...6,629,264 		JBrowse link
G LOC102010850 cytochrome P450 1A1 ISO RGD PMID:12162855 RGD:727721 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488 		JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (PMID:12117810) MGI PMID:12117810 NCBI chrNW_004955489:418,650...422,428 JBrowse link
G Muc19 mucin 19, oligomeric acts_upstream_of_or_within ISO (PMID:37475871) MGI PMID:37475871 NCBI chrNW_004955505:729...64,653 JBrowse link
G Muc4 mucin 4, cell surface associated ISO RGD PMID:15389518 RGD:2303738 NCBI chrNW_004955420:12,228,801...12,274,840 JBrowse link
G Myocd myocardin acts_upstream_of_or_within ISO (PMID:21357509) MGI PMID:21357509 NCBI chrNW_004955467:4,653,065...4,743,438
Ensembl chrNW_004955467:4,656,380...4,743,110 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 acts_upstream_of_or_within ISO (PMID:36720308) MGI PMID:36720308 NCBI chrNW_004955403:19,510,122...19,536,428
Ensembl chrNW_004955403:19,532,103...19,535,944 		JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO (PMID:18987169) MGI PMID:18987169 NCBI chrNW_004955415:29,263,741...29,268,259
Ensembl chrNW_004955415:29,258,434...29,268,259 		JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO (PMID:10926756)
(PMID:10207146) 		MGI PMID:10207146 PMID:10926756 NCBI chrNW_004955507:5,454,871...5,457,247
Ensembl chrNW_004955507:5,455,087...5,457,660 		JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in ISO (PMID:9545560) BHF-UCL PMID:9545560 NCBI chrNW_004955403:46,831,758...46,836,358
Ensembl chrNW_004955403:46,831,696...46,836,333 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO (PMID:32901096) MGI PMID:32901096 NCBI chrNW_004955472:506,351...523,647
Ensembl chrNW_004955472:506,351...523,316 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 ISO intestine RGD PMID:17341476 RGD:401827282 NCBI chrNW_004955422:940,310...954,170
Ensembl chrNW_004955422:940,310...949,049 		JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chrNW_004955405:36,160,360...36,236,258
Ensembl chrNW_004955405:36,160,049...36,237,751 		JBrowse link
G Nts neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chrNW_004955405:23,696,258...23,758,487
Ensembl chrNW_004955405:23,748,280...23,758,529 		JBrowse link
G Oxtr oxytocin receptor ISO RGD PMID:19003903 RGD:2303961 NCBI chrNW_004955561:340,387...354,499
Ensembl chrNW_004955561:337,902...354,336 		JBrowse link
G Pdgfa platelet derived growth factor subunit A acts_upstream_of_or_within
involved_in 		ISO (PMID:23938297)
(PMID:10903171) 		MGI
UniProt		 PMID:10903171 PMID:23938297 NCBI chrNW_004955460:8,328,400...8,346,755
Ensembl chrNW_004955460:8,326,891...8,346,550 		JBrowse link
G Pdgfc platelet derived growth factor C acts_upstream_of_or_within ISO (PMID:23938297) MGI PMID:23938297 NCBI chrNW_004955471:10,318,683...10,500,624
Ensembl chrNW_004955471:10,418,455...10,500,668 		JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within ISO (PMID:19619492) MGI PMID:19619492 NCBI chrNW_004955497:7,281,886...7,307,969 JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004955442:15,132,555...15,178,377
Ensembl chrNW_004955442:15,145,640...15,178,377 		JBrowse link
G Rb1 RB transcriptional corepressor 1 acts_upstream_of_or_within ISO (PMID:17257418) MGI PMID:17257418 NCBI chrNW_004955431:1,960,765...2,124,576
Ensembl chrNW_004955431:1,960,661...2,124,576 		JBrowse link
G Rcbtb2 RCC1 and BTB domain containing protein 2 acts_upstream_of_or_within ISO (PMID:26291700) MGI PMID:26291700 NCBI chrNW_004955431:2,122,640...2,170,222
Ensembl chrNW_004955431:2,129,006...2,162,854 		JBrowse link
G Slc4a2 solute carrier family 4 member 2 ISO RGD PMID:8770049 RGD:9999233 NCBI chrNW_004955491:5,498,472...5,513,389
Ensembl chrNW_004955491:5,499,033...5,517,319 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:19619492) MGI PMID:19619492 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Tgfb3 transforming growth factor beta 3 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955438:33,129...55,180
Ensembl chrNW_004955438:29,415...55,180 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837 		JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chrNW_004955451:14,731,746...14,743,545
Ensembl chrNW_004955451:14,731,746...14,744,367 		JBrowse link
G Tk1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chrNW_004955506:4,379,830...4,390,729
Ensembl chrNW_004955506:4,379,830...4,394,713 		JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agr2 anterior gradient 2, protein disulphide isomerase family member involved_in ISO (PMID:25666625) UniProt PMID:25666625 NCBI chrNW_004955410:19,984,768...19,995,446
Ensembl chrNW_004955410:19,984,768...19,995,733 		JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (PMID:7812968) MGI PMID:7812968 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485 		JBrowse link
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO (PMID:7618084) MGI PMID:7618084 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Ephb3 EPH receptor B3 involved_in ISO (PMID:12408869) UniProt PMID:12408869 NCBI chrNW_004955420:22,900,588...22,919,924
Ensembl chrNW_004955420:22,901,337...22,920,712 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:19407216) MGI PMID:19407216 NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:20808783) MGI PMID:20808783 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Il18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chrNW_004955412:13,807,361...13,826,007
Ensembl chrNW_004955412:13,806,553...13,825,634 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO (PMID:20616347) MGI PMID:20616347 NCBI chrNW_004955472:506,351...523,647
Ensembl chrNW_004955472:506,351...523,316 		JBrowse link
G Percc1 proline and glutamate rich with coiled coil 1 involved_in ISO (PMID:31217582) UniProt PMID:31217582 NCBI chrNW_004955442:15,800,513...15,803,478 JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:19300477) MGI PMID:19300477 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:19300477) MGI PMID:19300477 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321 		JBrowse link
G Sfrp5 secreted frizzled related protein 5 involved_in
acts_upstream_of_or_within 		ISO (PMID:18981481)
(PMID:19300477) 		BHF-UCL
MGI		 PMID:18981481 PMID:19300477 NCBI chrNW_004955507:3,836,607...3,841,910
Ensembl chrNW_004955507:3,836,607...3,841,910 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:9731532) MGI PMID:9731532 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO (PMID:15843399), (PMID:6512238) MGI PMID:6512238 PMID:15843399 NCBI chrNW_004955413:24,313,311...24,323,112
Ensembl chrNW_004955413:24,311,783...24,323,315 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600 		JBrowse link
G Stx2 syntaxin 2 ISO RGD PMID:12464668 RGD:1298909 NCBI chrNW_004955482:1,249,972...1,273,250
Ensembl chrNW_004955482:1,252,600...1,270,913 		JBrowse link
G Tp73 tumor protein p73 acts_upstream_of_or_within ISO (PMID:10716451) MGI PMID:10716451 NCBI chrNW_004955486:7,914,608...7,961,992
Ensembl chrNW_004955486:7,914,440...7,952,982 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:19300477) MGI PMID:19300477 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19300477) MGI PMID:19300477 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7670465) MGI PMID:7670465 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:16806149) MGI PMID:16806149 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004955474:247,326...250,355
Ensembl chrNW_004955474:241,501...250,643 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:16308329) MGI PMID:16308329 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO (PMID:16308329) MGI PMID:16308329 NCBI chrNW_004955497:2,199,424...2,232,088
Ensembl chrNW_004955497:2,199,409...2,235,893 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004955465:11,740,374...11,744,619
Ensembl chrNW_004955465:11,740,323...11,744,619 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (PMID:10523863) MGI PMID:10523863 NCBI chrNW_004955439:1,523,516...1,560,185
Ensembl chrNW_004955439:1,521,292...1,560,220 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639) BHF-UCL PMID:18519639 NCBI chrNW_004955512:2,914,834...3,333,440
Ensembl chrNW_004955512:2,917,243...3,333,688 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO (PMID:19097194) UniProt PMID:19097194 NCBI chrNW_004955441:9,462,530...9,471,446
Ensembl chrNW_004955441:9,462,530...9,471,446 		JBrowse link
G Rarb retinoic acid receptor beta involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004955430:17,067,536...17,457,558
Ensembl chrNW_004955430:17,295,174...17,460,045 		JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004955491:4,954,809...4,957,724
Ensembl chrNW_004955491:4,955,068...4,956,956 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18280297) UniProt PMID:18280297 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chrNW_004955476:11,433,857...11,434,662
Ensembl chrNW_004955476:11,433,969...11,434,574 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700 		JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:16618415)
(PMID:15017552) 		MGI PMID:15017552 PMID:16618415 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16618415), (PMID:21492869)
(PMID:21550054) 		MGI PMID:16618415 PMID:21492869 PMID:21550054 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16127717) MGI PMID:16127717 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16247775) MGI PMID:16247775 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Hlx H2.0 like homeobox acts_upstream_of_or_within ISO (PMID:8557196) MGI PMID:8557196 NCBI chrNW_004955520:2,937,131...2,941,170
Ensembl chrNW_004955520:2,936,815...2,941,170 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:18635606) MGI PMID:18635606 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (PMID:16888283) UniProt PMID:16888283 NCBI chrNW_004955487:878,326...880,783
Ensembl chrNW_004955487:878,326...880,783 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10821773) MGI PMID:10821773 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chrNW_004955426:21,666,958...21,841,515
Ensembl chrNW_004955426:21,666,857...21,841,515 		JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:16423343) MGI PMID:16423343 NCBI chrNW_004955415:26,825,284...26,843,438
Ensembl chrNW_004955415:26,825,284...26,843,438 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISO (PMID:10903171) UniProt PMID:10903171 NCBI chrNW_004955447:16,570,652...16,613,410
Ensembl chrNW_004955447:16,569,909...16,612,373 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10821773) MGI PMID:10821773 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:16141225) MGI PMID:16141225 NCBI chrNW_004955448:8,937,656...8,947,890
Ensembl chrNW_004955448:8,937,610...8,947,890 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (PMID:19660448) UniProt PMID:19660448 NCBI chrNW_004955441:12,029,530...12,033,214
Ensembl chrNW_004955441:12,029,480...12,033,214 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (PMID:15254231) UniProt PMID:15254231 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
G Tcf21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chrNW_004955439:2,617,562...2,620,613
Ensembl chrNW_004955439:2,617,492...2,620,644 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955408:5,362,423...5,388,684
Ensembl chrNW_004955408:5,362,084...5,388,527 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134 		JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:23142660) MGI PMID:23142660 NCBI chrNW_004955437:1,820,355...1,833,615
Ensembl chrNW_004955437:1,820,817...1,833,363 		JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:10921901) MGI PMID:10921901 NCBI chrNW_004955427:25,438,652...25,467,360
Ensembl chrNW_004955427:25,438,652...25,467,360 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:18692041) MGI PMID:18692041 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (PMID:18794329) MGI PMID:18794329 NCBI chrNW_004955459:9,641,926...9,783,718
Ensembl chrNW_004955459:9,641,884...9,784,173 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11493558) MGI PMID:11493558 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO (PMID:15361625) MGI PMID:15361625 NCBI chrNW_004955437:8,029,346...8,056,243
Ensembl chrNW_004955437:8,014,939...8,057,033 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136932)
(PMID:9136933) 		MGI PMID:9136932 PMID:9136933 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:9731532) MGI PMID:9731532 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004955402:33,131,760...33,217,144
Ensembl chrNW_004955402:33,136,778...33,216,844 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in 		ISO (PMID:18462699)
(PMID:21305474)
(PMID:19619492) 		MGI
BHF-UCL		 PMID:18462699 PMID:19619492 PMID:21305474 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (PMID:20145239) UniProt PMID:20145239 NCBI chrNW_004955466:12,367,760...12,374,141
Ensembl chrNW_004955466:12,367,775...12,373,036 		JBrowse link
G Hoxa13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004955410:28,887,952...28,893,515
Ensembl chrNW_004955410:28,890,171...28,893,515 		JBrowse link
G Hoxd13 homeobox D13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004955403:20,568,314...20,575,579
Ensembl chrNW_004955403:20,568,314...20,575,579 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955408:5,362,423...5,388,684
Ensembl chrNW_004955408:5,362,084...5,388,527 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134 		JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (PMID:16888283) UniProt PMID:16888283 NCBI chrNW_004955487:878,326...880,783
Ensembl chrNW_004955487:878,326...880,783 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:21305474) BHF-UCL PMID:21305474 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B involved_in ISO (PMID:10021336) BHF-UCL PMID:10021336 NCBI chrNW_004955404:29,394,253...29,425,358
Ensembl chrNW_004955404:29,394,164...29,425,358 		JBrowse link
enterocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO (PMID:17980593) MGI PMID:17980593 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408 		JBrowse link
exocrine pancreas development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cela1 chymotrypsin like elastase 1 acts_upstream_of_or_within ISO (PMID:17222338) MGI PMID:17222338 NCBI chrNW_004955547:1,810,680...1,823,938
Ensembl chrNW_004955547:1,810,670...1,824,409 		JBrowse link
G Igf1 insulin like growth factor 1 acts_upstream_of_or_within ISO (PMID:12101187) MGI PMID:12101187 NCBI chrNW_004955405:37,505,830...37,582,152
Ensembl chrNW_004955405:37,512,201...37,582,152 		JBrowse link
G Igf1r insulin like growth factor 1 receptor acts_upstream_of_or_within ISO (PMID:12101187) MGI PMID:12101187 NCBI chrNW_004955416:26,101,090...26,382,660
Ensembl chrNW_004955416:26,102,628...26,382,666 		JBrowse link
G Igf2 insulin like growth factor 2 acts_upstream_of_or_within ISO (PMID:12101187) MGI PMID:12101187 NCBI chrNW_004955422:13,880,525...13,907,963
Ensembl chrNW_004955422:13,880,471...13,888,566 		JBrowse link
G Insr insulin receptor acts_upstream_of_or_within ISO (PMID:12101187) MGI PMID:12101187 NCBI chrNW_004955563:1,867,400...2,011,845
Ensembl chrNW_004955563:1,867,400...2,009,149 		JBrowse link
G Nr5a2 nuclear receptor subfamily 5 group A member 2 involved_in ISO (PMID:21852532), (PMID:29443959) UniProt PMID:21852532 PMID:29443959 NCBI chrNW_004955406:36,263,257...36,415,494
Ensembl chrNW_004955406:36,263,184...36,415,525 		JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within ISO (PMID:16126192) MGI PMID:16126192 NCBI chrNW_004955497:7,281,886...7,307,969 JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISO PMID:10768861
(PMID:21852532) 		UniProt PMID:10768861 PMID:21852532 RGD:8554373 NCBI chrNW_004955429:5,807,804...5,809,522
Ensembl chrNW_004955429:5,808,124...5,809,522 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISO (PMID:20614471) ParkinsonsUK-UCL PMID:20614471 NCBI chrNW_004955423:23,374,401...23,465,308
Ensembl chrNW_004955423:23,374,401...23,466,475 		JBrowse link
G Xbp1 X-box binding protein 1 acts_upstream_of_or_within ISO (PMID:16362047) MGI PMID:16362047 NCBI chrNW_004955455:3,037,885...3,041,827 JBrowse link
foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16107537) MGI PMID:16107537 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
hindgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Filip1l filamin A interacting protein 1 like acts_upstream_of_or_within ISO (PMID:26655467) MGI PMID:26655467 NCBI chrNW_004955427:1,386,163...1,641,985
Ensembl chrNW_004955427:1,365,112...1,471,901 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:21653639) MGI PMID:21653639 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026 		JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:11485934) MGI PMID:11485934 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:11485934) MGI PMID:11485934 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11485934) MGI PMID:11485934 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:18804104) MGI PMID:18804104 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21383503) MGI PMID:21383503 NCBI chrNW_004955432:14,298,873...14,353,824
Ensembl chrNW_004955432:14,298,822...14,353,824 		JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (PMID:22766025) MGI PMID:22766025 NCBI chrNW_004955484:7,782,409...7,861,082
Ensembl chrNW_004955484:7,782,772...7,860,967 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797 		JBrowse link
G Gsdmc gasdermin C involved_in ISO (PMID:17350798) UniProt PMID:17350798 NCBI chrNW_004955461:4,594,967...4,610,037 JBrowse link
G Il6st interleukin 6 cytokine family signal transducer involved_in ISO (PMID:25731159) UniProt PMID:25731159 NCBI chrNW_004955446:11,790,636...11,837,734
Ensembl chrNW_004955446:11,790,444...11,835,001 		JBrowse link
G Klf5 KLF transcription factor 5 acts_upstream_of_or_within ISO (PMID:23266329) MGI PMID:23266329 NCBI chrNW_004955404:33,642,604...33,665,445
Ensembl chrNW_004955404:33,644,077...33,658,094 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chrNW_004955480:10,212,929...10,215,814
Ensembl chrNW_004955480:10,213,761...10,216,860 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO (PMID:21670299) MGI PMID:21670299 NCBI chrNW_004955411:31,434,503...31,455,995
Ensembl chrNW_004955411:31,434,503...31,456,056 		JBrowse link
G Spdef SAM pointed domain containing ETS transcription factor acts_upstream_of_or_within ISO (PMID:19549527) MGI PMID:19549527 NCBI chrNW_004955437:2,667,499...2,679,940
Ensembl chrNW_004955437:2,666,105...2,680,061 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:25731159) UniProt PMID:25731159 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO (PMID:23726973) MGI PMID:23726973 NCBI chrNW_004955413:2,129,719...2,153,873
Ensembl chrNW_004955413:2,129,678...2,154,380 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in ISO (PMID:25731159) UniProt PMID:25731159 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408 		JBrowse link
G Yipf6 Yip1 domain family member 6 acts_upstream_of_or_within ISO (PMID:22802641) MGI PMID:22802641 NCBI chrNW_004955475:8,085,017...8,101,624
Ensembl chrNW_004955475:8,084,886...8,101,624 		JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfa2t2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in ISO (PMID:25398765) UniProt PMID:25398765 NCBI chrNW_004955422:27,671,215...27,809,384
Ensembl chrNW_004955422:27,671,215...27,809,381 		JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (PMID:22015720) UniProt PMID:22015720 NCBI chrNW_004955497:7,316,372...7,321,627 JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9566909) MGI PMID:9566909 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267 		JBrowse link
G Gata5 GATA binding protein 5 acts_upstream_of_or_within ISO (PMID:9566909) MGI PMID:9566909 NCBI chrNW_004955528:1,595,231...1,604,979
Ensembl chrNW_004955528:1,595,231...1,604,979 		JBrowse link
G Ptk6 protein tyrosine kinase 6 involved_in ISO (PMID:16782882) UniProt PMID:16782882 NCBI chrNW_004955528:687,996...695,596
Ensembl chrNW_004955528:687,996...695,596 		JBrowse link
G Sav1 salvador family WW domain containing protein 1 acts_upstream_of_or_within ISO (PMID:18369314) MGI PMID:18369314 NCBI chrNW_004955409:12,200,721...12,221,520
Ensembl chrNW_004955409:12,200,721...12,220,410 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of ISO (PMID:17681175) MGI PMID:17681175 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO (PMID:17980593) MGI PMID:17980593 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408 		JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO RGD PMID:20466941 RGD:8662316 NCBI chrNW_004955437:6,254,638...6,261,278
Ensembl chrNW_004955437:6,254,309...6,261,479 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:15778706) MGI PMID:15778706 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:20808783) MGI PMID:20808783 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within ISO (PMID:10564089) MGI PMID:10564089 NCBI chrNW_004955410:28,835,795...28,838,244
Ensembl chrNW_004955410:28,834,127...28,838,244 		JBrowse link
G Si sucrase-isomaltase ISO RGD PMID:18313392 RGD:597538476 NCBI chrNW_004955448:14,686,315...14,777,298
Ensembl chrNW_004955448:14,685,963...14,777,338 		JBrowse link
G Tmigd1 transmembrane and immunoglobulin domain containing 1 acts_upstream_of_or_within ISO (PMID:33129760) MGI PMID:33129760 NCBI chrNW_004955481:2,977,245...3,009,724
Ensembl chrNW_004955481:2,995,922...3,013,408 		JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:1260861 RGD:2317427 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631 		JBrowse link
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
G Arg2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chrNW_004955466:2,549,557...2,577,060
Ensembl chrNW_004955466:2,549,557...2,577,060 		JBrowse link
G Asl argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004955456:8,409,767...8,419,915
Ensembl chrNW_004955456:8,411,220...8,416,992 		JBrowse link
G Ass1 argininosuccinate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004955513:443,372...485,190
Ensembl chrNW_004955513:445,462...485,190 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004955457:4,848,116...4,961,384
Ensembl chrNW_004955457:4,844,152...4,961,246 		JBrowse link
G Ctnnb1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Dab1 DAB adaptor protein 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358 		JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chrNW_004955435:22,804,484...22,820,807
Ensembl chrNW_004955435:22,804,484...22,821,482 		JBrowse link
G Otc ornithine transcarbamylase ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004955601:481,524...543,176
Ensembl chrNW_004955601:481,480...543,176 		JBrowse link
G Reln reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chrNW_004955410:8,424,439...8,863,966
Ensembl chrNW_004955410:8,424,394...8,863,969 		JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004955513:3,313,544...3,386,544
Ensembl chrNW_004955513:3,335,897...3,386,994 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19100728) MGI PMID:19100728 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:18173746) MGI PMID:18173746 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Nkx6-3 NK6 homeobox 3 acts_upstream_of_or_within ISO (PMID:18347062) MGI PMID:18347062 NCBI chrNW_004955536:1,241,110...1,245,504
Ensembl chrNW_004955536:1,240,946...1,245,651 		JBrowse link
positive regulation of intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr9 toll like receptor 9 involved_in ISO (PMID:17128265) BHF-UCL PMID:17128265 NCBI chrNW_004955532:3,828,645...3,832,699
Ensembl chrNW_004955532:3,828,775...3,832,582 		JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO (PMID:10926756) MGI PMID:10926756 NCBI chrNW_004955507:5,454,871...5,457,247
Ensembl chrNW_004955507:5,455,087...5,457,660 		JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B acts_upstream_of_or_within ISO (PMID:8582288) MGI PMID:8582288 NCBI chrNW_004955404:29,394,253...29,425,358
Ensembl chrNW_004955404:29,394,164...29,425,358 		JBrowse link
stomach development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:29700203) MGI PMID:29700203 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in ISO (PMID:15385447) MGI PMID:15385447 NCBI chrNW_004955422:14,212,563...14,544,556
Ensembl chrNW_004955422:14,212,553...14,544,556 		JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:18173746) MGI PMID:18173746 NCBI chrNW_004955405:37,941,243...37,943,641
Ensembl chrNW_004955405:37,941,243...37,943,641 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO (PMID:18173746) MGI PMID:18173746 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Nkx6-3 NK6 homeobox 3 acts_upstream_of ISO (PMID:18347062) MGI PMID:18347062 NCBI chrNW_004955536:1,241,110...1,245,504
Ensembl chrNW_004955536:1,240,946...1,245,651 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12628
    multicellular organismal process 6318
      multicellular organism development 4634
        system development 4038
          digestive system development 178
            digestive tract development + 163
            exocrine pancreas development 10
Path 2
Term Annotations click to browse term
  biological_process 12628
    developmental process 5998
      anatomical structure development 5669
        multicellular organism development 4634
          system development 4038
            digestive system development 178
              digestive tract development + 163
              exocrine pancreas development 10
paths to the root