ONTOLOGY REPORT - ANNOTATIONS
Term: digestive system development
Accession: GO:0055123
browse the term
Definition: The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.
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Barx1
BARX homeobox 1
acts_upstream_of_or_within
ISO
MGI:3578634 (PMID:19208343)
RGD
PMID:19208343
NCBI chr17:15,990,412...15,993,887
Ensembl chr17:15,990,412...15,993,887
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Cdkn1c
cyclin-dependent kinase inhibitor 1C
acts_upstream_of_or_within
ISO
MGI:1933758|MGI:3840687 (PMID:19276117)
RGD
PMID:19276117
NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048
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Cela1
chymotrypsin like elastase 1
acts_upstream_of_or_within
ISO
MGI:2148594 (PMID:17222338)
RGD
PMID:17222338
NCBI chr 7:131,773,161...131,786,300
Ensembl chr 7:131,742,002...131,786,285
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Gip
gastric inhibitory polypeptide
IEP
RGD
PMID:8674860
RGD:2312540
NCBI chr10:80,968,360...80,976,506
Ensembl chr10:80,968,352...80,976,503
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Hip1r
huntingtin interacting protein 1 related
involved_in
ISO
(PMID:18535670)
RGD
PMID:18535670
NCBI chr12:32,590,164...32,618,841
Ensembl chr12:32,590,165...32,618,734
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Nkx3-2
NK3 homeobox 2
acts_upstream_of_or_within
ISO
MGI:3848005 (PMID:19208343)
RGD
PMID:19208343
NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061
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Nodal
nodal growth differentiation factor
acts_upstream_of_or_within
ISO
MGI:2158732 (PMID:11311163)
RGD
PMID:11311163
NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
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Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:2136268 (PMID:11493526)
RGD
PMID:11493526
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
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Wdpcp
WD repeat containing planar cell polarity effector
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:5558098|MGI:5558100 (PMID:24302887)
Ensembl RGD
PMID:24302887
GO_REF:0000107
NCBI chr14:95,645,955...95,977,120
Ensembl chr14:95,646,038...95,977,113
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Wdr19
WD repeat domain 19
acts_upstream_of_or_within
ISO
MGI:5315747 (PMID:22228095)
RGD
PMID:22228095
NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
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Chrd
chordin
involved_in
ISO
MGI:2157350 (PMID:12810603)
RGD
PMID:12810603
NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
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Crkl
CRK like proto-oncogene, adaptor protein
acts_upstream_of_or_within
ISO
MGI:5510713 (PMID:25565927)
RGD
PMID:25565927
NCBI chr11:83,528,788...83,563,214
Ensembl chr11:83,526,530...83,563,238
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Ednrb
endothelin receptor type B
involved_in
ISO
(PMID:18199583)
RGD
PMID:18199583
NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
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Foxe1
forkhead box E1
involved_in
ISO
(PMID:15494458)
RGD
PMID:15494458
NCBI chr 5:60,630,027...60,632,835
Ensembl chr 5:60,630,027...60,632,835
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Ahi1
Abelson helper integration site 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
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Tp63
tumor protein p63
acts_upstream_of_or_within
ISO
MGI:1934269 (PMID:12368184)
RGD
PMID:12368184
NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
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Wnt11
Wnt family member 11
involved_in
ISO
(PMID:9757009)
RGD
PMID:9757009
NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294
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Ccdc103
coiled-coil domain containing 103
involved_in
ISO
(PMID:22581229)
RGD
PMID:22581229
NCBI chr10:87,846,327...87,849,959
Ensembl chr10:87,846,357...87,849,757
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Ccdc39
coiled-coil domain 39 molecular ruler complex subunit
involved_in
ISO
(PMID:22693285)
RGD
PMID:22693285
NCBI chr 2:116,665,651...116,703,354
Ensembl chr 2:116,665,261...116,703,350
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Ccdc40
coiled-coil domain 40 molecular ruler complex subunit
involved_in
ISO
(PMID:22693285)
RGD
PMID:22693285
NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243
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Dnaaf1
dynein, axonemal, assembly factor 1
involved_in
ISO IEA
(PMID:19944405) GO_REF:0000107
RGD Ensembl
PMID:19944405
GO_REF:0000107
NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313
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Megf8
multiple EGF-like-domains 8
involved_in acts_upstream_of_or_within
IEA ISO ISS
GO_REF:0000107 MGI:3722325 (PMID:18043505) GO_REF:0000024
Ensembl RGD UniProt
PMID:18043505
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613
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Zic3
Zic family member 3
involved_in
ISO
(PMID:9354794)
RGD
PMID:9354794
NCBI chr X:136,123,662...136,129,627
Ensembl chr X:136,124,026...136,134,746
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Nphp3
nephrocystin 3
involved_in
ISO
(PMID:20007846)
RGD
PMID:20007846
NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383
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Nphp3
nephrocystin 3
involved_in
ISO
(PMID:18371931)
RGD
PMID:18371931
NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383
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Alx4
ALX homeobox 4
acts_upstream_of_or_within
ISO
MGI:1857484 (PMID:9268572)
RGD
PMID:9268572
NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:79,611,719...79,648,260
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Cckbr
cholecystokinin B receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2384535 (PMID:15476751)
Ensembl RGD
PMID:15476751
GO_REF:0000107
NCBI chr 1:159,771,733...159,781,738
Ensembl chr 1:159,771,733...159,814,881
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Ccnb1
cyclin B1
IEP
perinatal small intestine
RGD
PMID:17692466
RGD:2316322
NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172
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Cd36
CD36 molecule
IEP
RGD
PMID:11595646
RGD:628450
NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903
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Cdx2
caudal type homeo box 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
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Cdx4
caudal type homeo box 4
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:68,326,874...68,335,461
Ensembl chr X:68,326,874...68,335,461
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Chd8
chromodomain helicase DNA binding protein 8
involved_in acts_upstream_of_or_within
ISO IBA IEA
(PMID:24998929) GO_REF:0000033 MGI:3530648 (PMID:27602517) GO_REF:0000107
RGD GO_Central Ensembl
PMID:24998929 PMID:27602517
GO_REF:0000033 GO_REF:0000107
NCBI chr15:24,905,789...24,965,461
Ensembl chr15:24,905,789...24,951,285
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Ckmt1
creatine kinase, mitochondrial 1
IEP
RGD
PMID:8086475
RGD:11565082
NCBI chr 3:108,329,859...108,335,760
Ensembl chr 3:108,330,705...108,335,758
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Cldn18
claudin 18
acts_upstream_of_or_within
ISO
MGI:5007067 (PMID:22437732)
RGD
PMID:22437732
NCBI chr 8:100,246,499...100,265,797
Ensembl chr 8:100,247,633...100,273,351
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Clmp
CXADR-like membrane protein
involved_in
ISO IEA
(PMID:22155368) GO_REF:0000107
RGD Ensembl
PMID:22155368
GO_REF:0000107
NCBI chr 8:41,060,527...41,168,841
Ensembl chr 8:41,060,799...41,168,838
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Cobl
cordon-bleu WH2 repeat protein
involved_in
IEA ISO
GO_REF:0000107 (PMID:7586755)
Ensembl RGD
PMID:7586755
GO_REF:0000107
NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800
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Col3a1
collagen type III alpha 1 chain
involved_in acts_upstream_of_or_within
ISO
MGI:1857431 (PMID:20587693) MGI:1857431 (PMID:9050868)
RGD
PMID:9050868 PMID:20587693
NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
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Cyp1a1
cytochrome P450, family 1, subfamily a, polypeptide 1
IEP
RGD
PMID:12162855
RGD:727721
NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
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Dchs1
dachsous cadherin-related 1
acts_upstream_of_or_within
ISO
MGI:4867020 (PMID:21303848)
RGD
PMID:21303848
NCBI chr 1:160,104,931...160,138,958
Ensembl chr 1:160,104,931...160,124,808
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Dicer1
dicer 1 ribonuclease III
acts_upstream_of_or_within
ISO
(PMID:21307095)
RGD
PMID:21307095
NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
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Ep300
E1A binding protein p300
IEP
RGD
PMID:17916272
RGD:2312267
NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Fat4
FAT atypical cadherin 4
acts_upstream_of_or_within
ISO
MGI:3846573 (PMID:21303848)
RGD
PMID:21303848
NCBI chr 2:121,927,266...122,056,700
Ensembl chr 2:121,927,942...122,056,707
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Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:1859647 (PMID:15234214)
RGD
PMID:15234214
NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
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Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:2153811 (PMID:15234214)
RGD
PMID:15234214
NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
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Foxf1
forkhead box F1
involved_in
ISO
(PMID:19500772)
RGD
PMID:19500772
NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738
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Hrh2
histamine receptor H 2
acts_upstream_of_or_within
ISO
MGI:2182949|MGI:3607154 (PMID:10862789), (PMID:15476751)
RGD
PMID:10862789 PMID:15476751
NCBI chr17:10,366,004...10,407,791
Ensembl chr17:10,368,298...10,407,631
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Kit
KIT proto-oncogene receptor tyrosine kinase
involved_in
ISO
(PMID:15067126)
RGD
PMID:15067126
NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
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Lgr4
leucine-rich repeat-containing G protein-coupled receptor 4
acts_upstream_of_or_within
ISO
(PMID:24680895)
RGD
PMID:24680895
NCBI chr 3:96,447,385...96,550,006
Ensembl chr 3:96,447,858...96,548,899
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Mixl1
Mix paired-like homeobox 1
acts_upstream_of_or_within
ISO
MGI:2387828 (PMID:12117810)
RGD
PMID:12117810
NCBI chr13:92,422,031...92,426,065
Ensembl chr13:92,422,031...92,426,065
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Muc19
mucin 19, oligomeric
acts_upstream_of_or_within
ISO
(PMID:37475871)
RGD
PMID:37475871
NCBI chr 7:123,017,896...123,139,053
Ensembl chr 7:123,017,896...123,139,053
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Muc4
mucin 4, cell surface associated
IEP
RGD
PMID:15389518
RGD:2303738
NCBI chr11:68,008,245...68,053,242
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Myocd
myocardin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3052940 (PMID:21357509)
Ensembl RGD
PMID:21357509
GO_REF:0000107
NCBI chr10:49,833,219...49,928,806
Ensembl chr10:49,836,641...49,927,627
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Nat2
N-acetyltransferase 2
IEP
RGD
PMID:18799802
RGD:2303764
NCBI chr16:22,207,362...22,238,513
Ensembl chr16:22,208,194...22,238,520
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Nipbl
NIPBL, cohesin loading factor
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
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Nkx2-2
NK2 homeobox 2
acts_upstream_of_or_within
ISO
MGI:1932100 (PMID:18987169)
RGD
PMID:18987169
NCBI chr 3:134,619,701...134,630,282
Ensembl chr 3:134,620,039...134,622,411
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Nkx2-3
NK2 homeobox 3
acts_upstream_of_or_within
ISO
MGI:2386680|MGI:2448069 (PMID:10207146), (PMID:10926756)
RGD
PMID:10207146 PMID:10926756
NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083
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Nkx2-6
NK2 homeobox 6
involved_in
ISO
(PMID:9545560)
RGD
PMID:9545560
NCBI chr15:44,443,151...44,447,248
Ensembl chr15:44,443,101...44,447,247
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Npr2
natriuretic peptide receptor 2
involved_in
ISO
MGI:3774275 (PMID:32901096)
RGD
PMID:32901096
NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580
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Nr1h3
nuclear receptor subfamily 1, group H, member 3
IEP
intestine
RGD
PMID:17341476
RGD:401827282
NCBI chr 3:77,158,808...77,168,907
Ensembl chr 3:77,158,808...77,168,722
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Nr1h4
nuclear receptor subfamily 1, group H, member 4
IEP
RGD
PMID:11984532
RGD:1625207
NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047
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Nts
neurotensin
IEP
RGD
PMID:8571204
RGD:9743850
NCBI chr 7:37,564,944...37,574,350
Ensembl chr 7:37,564,533...37,574,423
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Oxtr
oxytocin receptor
IEP
RGD
PMID:19003903
RGD:2303961
NCBI chr 4:145,598,549...145,614,674
Ensembl chr 4:145,599,561...145,614,674
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Pdgfa
platelet derived growth factor subunit A
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1859631 (PMID:23938297) GO_REF:0000107 (PMID:10903171)
RGD Ensembl
PMID:10903171 PMID:23938297
GO_REF:0000107
NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497
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Pdgfc
platelet derived growth factor C
acts_upstream_of_or_within
ISO
MGI:97527 (PMID:23938297)
RGD
PMID:23938297
NCBI chr 2:166,316,870...166,493,449
Ensembl chr 2:166,316,803...166,493,433
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Pdx1
pancreatic and duodenal homeobox 1
acts_upstream_of_or_within
ISO
MGI:2388676 (PMID:19619492)
RGD
PMID:19619492
NCBI chr12:7,757,865...7,763,064
Ensembl chr12:7,757,865...7,763,064
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Pkd1
polycystin 1, transient receptor potential channel interacting
involved_in
ISO
(PMID:11891195)
RGD
PMID:11891195
NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128
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Rb1
RB transcriptional corepressor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1931018|MGI:3574761 (PMID:17257418)
Ensembl RGD
PMID:17257418
GO_REF:0000107
NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302
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Rcbtb2
RCC1 and BTB domain containing protein 2
acts_upstream_of_or_within
ISO
(PMID:26291700)
RGD
PMID:26291700
NCBI chr15:48,319,809...48,364,441
Ensembl chr15:48,323,866...48,383,750
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Slc4a2
solute carrier family 4 member 2
IEP
RGD
PMID:8770049
RGD:9999233
NCBI chr 4:10,736,419...10,754,407
Ensembl chr 4:10,736,425...10,752,965
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Smo
smoothened, frizzled class receptor
acts_upstream_of_or_within
ISO
MGI:2176255 (PMID:19619492)
RGD
PMID:19619492
NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
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Tgfb1
transforming growth factor, beta 1
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
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Tgfb2
transforming growth factor, beta 2
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
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Tgfb3
transforming growth factor, beta 3
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564
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Tgfbr1
transforming growth factor, beta receptor 1
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
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Tgfbr2
transforming growth factor, beta receptor 2
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
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Thra
thyroid hormone receptor alpha
IEP
RGD
PMID:17496154
RGD:2314319
NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
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Thra_v1
thyroid hormone receptor alpha, variant 1
IEP
RGD
PMID:17496154
RGD:2314319
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Thra_v2
thyroid hormone receptor alpha, variant 2
IEP
RGD
PMID:17496154
RGD:2314319
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Tk1
thymidine kinase 1
IEP
RGD
PMID:6701043
RGD:2317231
NCBI chr10:103,034,755...103,046,125
Ensembl chr10:103,031,521...103,046,920
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Shh
sonic hedgehog signaling molecule
IDA
RGD
PMID:9368764
RGD:2306312
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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Agr2
anterior gradient 2, protein disulphide isomerase family member
involved_in
ISO
(PMID:25666625)
RGD
PMID:25666625
NCBI chr 6:52,708,602...52,729,378
Ensembl chr 6:52,708,602...52,729,371
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Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2158305 (PMID:7812968)
Ensembl RGD
PMID:7812968
GO_REF:0000107
NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Cfc1
cripto, FRL-1, cryptic family 1
acts_upstream_of_or_within
ISO
MGI:2179530 (PMID:10521397)
RGD
PMID:10521397
NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930
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Egfr
epidermal growth factor receptor
acts_upstream_of_or_within
ISO
MGI:1856402 (PMID:7618084)
RGD
PMID:7618084
NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382
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Ephb3
Eph receptor B3
involved_in
ISO
(PMID:12408869)
RGD
PMID:12408869
NCBI chr11:79,840,668...79,859,345
Ensembl chr11:79,840,668...79,859,370
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Fgfr3
fibroblast growth factor receptor 3
acts_upstream_of_or_within
ISO
MGI:1931521 (PMID:19407216)
RGD
PMID:19407216
NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
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Hif1a
hypoxia inducible factor 1 subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2384429 (PMID:20808783)
Ensembl RGD
PMID:20808783
GO_REF:0000107
NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
G
Il18
interleukin 18
IEP
RGD
PMID:21088234
RGD:4889157
NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
G
Nodal
nodal growth differentiation factor
acts_upstream_of_or_within
ISO
MGI:2158732 (PMID:11311163)
RGD
PMID:11311163
NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
G
Npr2
natriuretic peptide receptor 2
involved_in
IEA ISO
GO_REF:0000107 MGI:3774275 (PMID:20616347)
Ensembl RGD
PMID:20616347
GO_REF:0000107
NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580
G
Percc1
proline and glutamate rich with coiled coil 1
involved_in
ISO
(PMID:31217582)
RGD
PMID:31217582
NCBI chr10:14,187,858...14,190,634
Ensembl chr10:14,188,216...14,189,040 Ensembl chr10:14,188,216...14,189,040
G
Sfrp1
secreted frizzled-related protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:108078|MGI:1860298|MGI:2135272 (PMID:19300477)
Ensembl RGD
PMID:19300477
GO_REF:0000107
NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286
G
Sfrp2
secreted frizzled-related protein 2
acts_upstream_of_or_within
ISO
MGI:1860298|MGI:2135272|MGI:892014 (PMID:19300477)
RGD
PMID:19300477
NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
G
Sfrp5
secreted frizzled-related protein 5
involved_in acts_upstream_of_or_within
ISO
(PMID:18981481) MGI:108078|MGI:2135272|MGI:892014 (PMID:19300477)
RGD
PMID:18981481 PMID:19300477
NCBI chr 1:241,006,762...241,011,224
Ensembl chr 1:241,006,762...241,011,224
G
Shh
sonic hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1857796 (PMID:9731532)
RGD
PMID:9731532
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
G
Sox10
SRY-box transcription factor 10
acts_upstream_of_or_within
ISO
MGI:1857401 (PMID:15843399), (PMID:6512238)
RGD
PMID:6512238 PMID:15843399
NCBI chr 7:110,725,274...110,734,651
Ensembl chr 7:110,725,274...110,735,544
G
Stra6
signaling receptor and transporter of retinol STRA6
involved_in
ISO IEA
(PMID:17273977) GO_REF:0000107
RGD Ensembl
PMID:17273977
GO_REF:0000107
NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860
G
Stx2
syntaxin 2
IMP
RGD
PMID:12464668
RGD:1298909
NCBI chr12:27,678,744...27,714,751
Ensembl chr12:27,689,819...27,714,751
G
Tp73
tumor protein p73
acts_upstream_of_or_within
ISO
MGI:1859911 (PMID:10716451)
RGD
PMID:10716451
NCBI chr 5:164,621,377...164,703,958
Ensembl chr 5:164,621,377...164,681,128
G
Vangl2
VANGL planar cell polarity protein 2
acts_upstream_of_or_within
ISO
MGI:108078|MGI:1860298|MGI:892014 (PMID:19300477)
RGD
PMID:19300477
NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
G
Wnt5a
Wnt family member 5A
acts_upstream_of_or_within
ISO
MGI:1857617 (PMID:19300477)
RGD
PMID:19300477
NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
G
Ada
adenosine deaminase
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2155977 (PMID:7670465)
Ensembl RGD
PMID:7670465
GO_REF:0000107
NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
G
Aldh1a2
aldehyde dehydrogenase 1 family, member A2
acts_upstream_of_or_within
ISO
MGI:1857891 (PMID:16806149)
RGD
PMID:16806149
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
G
Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:1927833 (PMID:16308329)
RGD
PMID:16308329
NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
G
Fgf9
fibroblast growth factor 9
acts_upstream_of_or_within
ISO
MGI:2135961 (PMID:16308329)
RGD
PMID:16308329
NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
G
Foxf1
forkhead box F1
acts_upstream_of_or_within
ISO
MGI:1347479 (PMID:16439479)
RGD
PMID:16439479
NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738
G
Foxf2
forkhead box F2
acts_upstream_of_or_within
ISO
MGI:1347470 (PMID:16439479)
RGD
PMID:16439479
NCBI chr17:32,835,730...32,842,547
Ensembl chr17:32,836,777...32,842,176
G
Gli2
GLI family zinc finger 2
acts_upstream_of_or_within
ISO
MGI:1857509 (PMID:10693670)
RGD
PMID:10693670
NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
G
Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:1856276 (PMID:10693670)
RGD
PMID:10693670
NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
G
Myb
MYB proto-oncogene, transcription factor
acts_upstream_of_or_within
ISO
MGI:2662859 (PMID:10523863)
RGD
PMID:10523863
NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
G
Pcsk5
proprotein convertase subtilisin/kexin type 5
involved_in
ISO IEA
(PMID:18519639) GO_REF:0000107
RGD Ensembl
PMID:18519639
GO_REF:0000107
NCBI chr 1:214,837,847...215,267,626
Ensembl chr 1:214,837,927...215,267,600
G
Pkdcc
protein kinase domain containing, cytoplasmic
involved_in
ISO
(PMID:19097194)
RGD
PMID:19097194
NCBI chr 6:11,455,686...11,465,002
Ensembl chr 6:11,455,686...11,465,556
G
Rarb
retinoic acid receptor, beta
involved_in
ISO
(PMID:19443732)
RGD
PMID:19443732
NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
G
Rarres2
retinoic acid receptor responder 2
involved_in
ISO
(PMID:19443732)
RGD
PMID:19443732
NCBI chr 4:77,522,549...77,525,733
Ensembl chr 4:77,522,535...77,525,556
G
Sall1
spalt-like transcription factor 1
involved_in
ISO
(PMID:18280297)
RGD
PMID:18280297
NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705
G
Sct
secretin
IEP
RGD
PMID:1711228
RGD:729899
NCBI chr 1:196,382,857...196,383,668
Ensembl chr 1:196,382,856...196,383,658
G
Stra6
signaling receptor and transporter of retinol STRA6
involved_in
ISO IEA
(PMID:17273977) GO_REF:0000107
RGD Ensembl
PMID:17273977
GO_REF:0000107
NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISO ISS
(PMID:20875417) GO_REF:0000024
RGD AgBase
PMID:20875417
GO_REF:0000024
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
G
Tnf
tumor necrosis factor
involved_in
ISO
(PMID:20875417)
RGD
PMID:20875417
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
G
Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:1859647|MGI:1927833 (PMID:15017552), (PMID:16618415)
RGD
PMID:15017552 PMID:16618415
NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
G
Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:2153811|MGI:2183527 (PMID:16618415), (PMID:21492869), (PMID:21550054)
RGD
PMID:16618415 PMID:21492869 PMID:21550054
NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
G
Foxf1
forkhead box F1
involved_in
ISO
(PMID:19500772)
RGD
PMID:19500772
NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738
G
Gata4
GATA binding protein 4
acts_upstream_of_or_within
ISO
MGI:2386764 (PMID:16127717)
RGD
PMID:16127717
NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
G
Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:1856276 (PMID:16247775)
RGD
PMID:16247775
NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
G
Hlx
H2.0-like homeobox
acts_upstream_of_or_within
ISO
MGI:2182089 (PMID:8557196)
RGD
PMID:8557196
NCBI chr13:96,280,335...96,285,750
Ensembl chr13:96,280,339...96,285,750
G
Hnf1b
HNF1 homeobox B
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857856 (PMID:18635606)
Ensembl RGD
PMID:18635606
GO_REF:0000107
NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
G
Id2
inhibitor of DNA binding 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:16888283)
UniProt RGD
PMID:16888283
GO_REF:0000024
NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400
G
Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1934258 (PMID:10821773)
RGD
PMID:10821773
NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
G
Nipbl
NIPBL, cohesin loading factor
involved_in
ISO
(PMID:19242925), (PMID:8291537)
RGD
PMID:8291537 PMID:19242925
NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
G
Ovol2
ovo-like zinc finger 2
acts_upstream_of_or_within
ISO
MGI:3522498 (PMID:16423343)
RGD
PMID:16423343
NCBI chr 3:131,677,391...131,707,123
Ensembl chr 3:131,677,391...131,708,359
G
Pdgfra
platelet derived growth factor receptor alpha
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:10903171) GO_REF:0000107
UniProt RGD Ensembl
PMID:10903171
GO_REF:0000024 GO_REF:0000107
NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335
G
Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:3767234 (PMID:21550054)
RGD
PMID:21550054
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1934261 (PMID:10821773)
Ensembl RGD
PMID:10821773
GO_REF:0000107
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
G
Shox2
SHOX homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3605739 (PMID:16141225)
Ensembl RGD
PMID:16141225
GO_REF:0000107
NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
G
Six2
SIX homeobox 2
involved_in
ISO
(PMID:19660448)
RGD
PMID:19660448
NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193
G
Sox11
SRY-box transcription factor 11
involved_in
ISS ISO
GO_REF:0000024 (PMID:15254231)
UniProt RGD
PMID:15254231
GO_REF:0000024
NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
G
Tcf21
transcription factor 21
IMP
RGD
PMID:11804032
RGD:727206
NCBI chr 1:22,701,353...22,704,212
Ensembl chr 1:22,701,353...22,704,202
G
Tcf7
transcription factor 7
acts_upstream_of_or_within
ISO
MGI:1202879 (PMID:15057272)
RGD
PMID:15057272
NCBI chr10:36,423,443...36,454,350
Ensembl chr10:36,423,445...36,453,535
G
Tcf7l2
transcription factor 7 like 2
acts_upstream_of_or_within
ISO
MGI:98507 (PMID:15057272)
RGD
PMID:15057272
NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
G
Vps52
VPS52 subunit of GARP complex
acts_upstream_of_or_within
ISO
(PMID:23142660)
RGD
PMID:23142660
NCBI chr20:4,920,715...4,931,685
Ensembl chr20:4,860,843...4,931,665
G
Foxf1
forkhead box F1
involved_in
ISO
(PMID:19500772)
RGD
PMID:19500772
NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738
G
Acvr2b
activin A receptor type 2B
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857709 (PMID:10921901)
Ensembl RGD
PMID:10921901
GO_REF:0000107
NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458
G
Ctnnb1
catenin beta 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2148567 (PMID:18692041)
Ensembl RGD
PMID:18692041
GO_REF:0000107
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
G
Epb41l5
erythrocyte membrane protein band 4.1 like 5
acts_upstream_of_or_within
ISO
MGI:3822451 (PMID:18794329)
RGD
PMID:18794329
NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360
G
Foxf1
forkhead box F1
acts_upstream_of_or_within
ISO
MGI:1929432 (PMID:11493558)
RGD
PMID:11493558
NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738
G
Foxp4
forkhead box P4
acts_upstream_of_or_within
ISO
MGI:3055161 (PMID:15361625)
RGD
PMID:15361625
NCBI chr 9:13,058,506...13,115,406
Ensembl chr 9:13,058,476...13,114,879
G
Gata4
GATA binding protein 4
acts_upstream_of_or_within
ISO
MGI:2179443|MGI:2386265 (PMID:9136932), (PMID:9136933)
RGD
PMID:9136932 PMID:9136933
NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
G
Nckap1
NCK-associated protein 1
acts_upstream_of_or_within
ISO
MGI:3578145 (PMID:16831833)
RGD
PMID:16831833
NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857796 (PMID:9731532)
Ensembl RGD
PMID:9731532
GO_REF:0000107
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
G
Smad2
SMAD family member 2
acts_upstream_of_or_within
ISO
MGI:1201674 (PMID:15183723)
RGD
PMID:15183723
NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
G
Smad3
SMAD family member 3
acts_upstream_of_or_within
ISO
MGI:108051 (PMID:15183723)
RGD
PMID:15183723
NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
G
Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within involved_in
ISO
MGI:2179440|MGI:3717118|MGI:4356113 (PMID:18462699), (PMID:19619492) (PMID:21305474)
RGD
PMID:18462699 PMID:19619492 PMID:21305474
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
G
Dact1
dishevelled-binding antagonist of beta-catenin 1
involved_in
ISO
(PMID:20145239)
RGD
PMID:20145239
NCBI chr 6:89,790,676...89,818,254
Ensembl chr 6:89,790,644...89,817,906
G
Hoxa13
homeo box A13
IMP
RGD
PMID:17161201
RGD:1599527
NCBI chr 4:81,358,956...81,361,091
Ensembl chr 4:81,358,956...81,361,091
G
Hoxd13
homeo box D13
IMP
RGD
PMID:17161201
RGD:1599527
NCBI chr 3:59,570,647...59,573,963
Ensembl chr 3:59,570,646...59,573,963
G
Tcf7
transcription factor 7
acts_upstream_of_or_within
ISO
MGI:1202879 (PMID:15057272)
RGD
PMID:15057272
NCBI chr10:36,423,443...36,454,350
Ensembl chr10:36,423,445...36,453,535
G
Tcf7l2
transcription factor 7 like 2
acts_upstream_of_or_within
ISO
MGI:98507 (PMID:15057272)
RGD
PMID:15057272
NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
G
Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:2183527 (PMID:21550054)
RGD
PMID:21550054
NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
G
Id2
inhibitor of DNA binding 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:16888283)
UniProt RGD
PMID:16888283
GO_REF:0000024
NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400
G
Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:3767234 (PMID:21550054)
RGD
PMID:21550054
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
G
Sox17
SRY-box transcription factor 17
involved_in
ISO
(PMID:21305474)
RGD
PMID:21305474
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
G
Ednrb
endothelin receptor type B
involved_in
ISO
(PMID:10021336)
RGD
PMID:10021336
NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
G
Yap1
Yes1 associated transcriptional regulator
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:17980593)
Ensembl RGD
PMID:17980593
GO_REF:0000107
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
G
Cela1
chymotrypsin like elastase 1
acts_upstream_of_or_within
ISO
MGI:2148594 (PMID:17222338)
RGD
PMID:17222338
NCBI chr 7:131,773,161...131,786,300
Ensembl chr 7:131,742,002...131,786,285
G
Igf1
insulin-like growth factor 1
acts_upstream_of_or_within
ISO
MGI:1926485 (PMID:12101187)
RGD
PMID:12101187
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
G
Igf1r
insulin-like growth factor 1 receptor
acts_upstream_of_or_within
ISO
MGI:1926486 (PMID:12101187)
RGD
PMID:12101187
NCBI chr 1:121,549,831...121,838,548
Ensembl chr 1:121,550,743...121,831,777
G
Igf2
insulin-like growth factor 2
acts_upstream_of_or_within
ISO
MGI:2677156 (PMID:12101187)
RGD
PMID:12101187
NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018
G
Insr
insulin receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857204 (PMID:12101187)
Ensembl RGD
PMID:12101187
GO_REF:0000107
NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
G
Pdx1
pancreatic and duodenal homeobox 1
acts_upstream_of_or_within
ISO
MGI:2388676 (PMID:16126192)
RGD
PMID:16126192
NCBI chr12:7,757,865...7,763,064
Ensembl chr12:7,757,865...7,763,064
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Ptf1a
pancreas associated transcription factor 1a
involved_in
IDA
PMID:10768861
UniProt
PMID:10768861
RGD:8554373
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
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Srp54a
signal recognition particle 54A
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 6:72,587,584...72,626,878
Ensembl chr 6:72,587,605...72,625,189
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Wls
Wnt ligand secretion mediator
involved_in
ISO
(PMID:20614471)
RGD
PMID:20614471
NCBI chr 2:248,931,885...249,047,248
Ensembl chr 2:248,931,903...249,048,298
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Xbp1
X-box binding protein 1
acts_upstream_of_or_within involved_in
ISO IEA
MGI:2386788 (PMID:16362047) GO_REF:0000107
RGD Ensembl
PMID:16362047
GO_REF:0000107
NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
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Notch1
notch receptor 1
acts_upstream_of_or_within
ISO
MGI:2684314|MGI:2684317 (PMID:16107537)
RGD
PMID:16107537
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
G
AABR07063281.1
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
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Ift172
intraflagellar transport 172
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4821824 (PMID:21653639)
Ensembl RGD
PMID:21653639
GO_REF:0000107
NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860
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Gli2
GLI family zinc finger 2
acts_upstream_of_or_within
ISO
MGI:1857509|MGI:95729 (PMID:11485934)
RGD
PMID:11485934
NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
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Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:95728 (PMID:11485934)
RGD
PMID:11485934
NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
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Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857796 (PMID:11485934)
Ensembl RGD
PMID:11485934
GO_REF:0000107
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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Wnt5a
Wnt family member 5A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857617 (PMID:18804104)
Ensembl RGD
PMID:18804104
GO_REF:0000107
NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
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C1galt1
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3714051 (PMID:21383503)
Ensembl RGD
PMID:21383503
GO_REF:0000107
NCBI chr 4:35,930,981...35,966,100
Ensembl chr 4:35,928,104...35,961,831
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Cdh1
cadherin 1
acts_upstream_of_or_within
ISO
(PMID:22766025)
RGD
PMID:22766025
NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775
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Dicer1
dicer 1 ribonuclease III
acts_upstream_of_or_within
ISO
MGI:108015 (PMID:21307095)
RGD
PMID:21307095
NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
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Il6st
interleukin 6 cytokine family signal transducer
involved_in
ISO IEA
(PMID:25731159) GO_REF:0000107
RGD Ensembl
PMID:25731159
GO_REF:0000107
NCBI chr 2:44,065,979...44,106,255
Ensembl chr 2:44,066,130...44,109,936
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Klf5
KLF transcription factor 5
acts_upstream_of_or_within
ISO
MGI:3806635 (PMID:23266329)
RGD
PMID:23266329
NCBI chr15:76,060,320...76,079,445
Ensembl chr15:76,064,258...76,079,445
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Mir3545
microRNA 3545
acts_upstream_of_or_within
ISO
(PMID:21307095)
RGD
PMID:21307095
NCBI chr 6:131,199,542...131,199,656
Ensembl chr 6:131,199,542...131,199,656
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Mir7-1
microRNA 7-1
acts_upstream_of_or_within
ISO
(PMID:21307095)
RGD
PMID:21307095
NCBI chr17:6,273,264...6,273,360
Ensembl chr17:6,273,264...6,273,360
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Nkx3-2
NK3 homeobox 2
acts_upstream_of_or_within
ISO
MGI:2177178 (PMID:21307095)
RGD
PMID:21307095
NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061
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Prdm1
PR/SET domain 1
acts_upstream_of_or_within
ISO
MGI:3605483|MGI:3605621 (PMID:21670299)
RGD
PMID:21670299
NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488
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Spdef
SAM pointed domain containing ets transcription factor
acts_upstream_of_or_within
ISO
MGI:4410321 (PMID:19549527)
RGD
PMID:19549527
NCBI chr20:5,771,440...5,785,893
Ensembl chr20:5,771,441...5,785,893
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Src
SRC proto-oncogene, non-receptor tyrosine kinase
involved_in
ISO
(PMID:25731159)
RGD
PMID:25731159
NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476
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Tigar
TP53 induced glycolysis regulatory phosphatase
acts_upstream_of_or_within
ISO
MGI:4391656 (PMID:23726973)
RGD
PMID:23726973
NCBI chr 4:159,927,136...159,946,077
Ensembl chr 4:159,927,139...159,946,029
G
Yap1
Yes1 associated transcriptional regulator
involved_in
IEA ISO
GO_REF:0000107 (PMID:25731159)
Ensembl RGD
PMID:25731159
GO_REF:0000107
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
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Yipf6
Yip1 domain family, member 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4839074 (PMID:22802641)
Ensembl RGD
PMID:22802641
GO_REF:0000107
NCBI chr X:64,039,602...64,051,715
Ensembl chr X:64,040,952...64,054,702
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Cbfa2t2
CBFA2/RUNX1 partner transcriptional co-repressor 2
involved_in
ISO
(PMID:25398765)
RGD
PMID:25398765
NCBI chr 3:142,936,945...143,043,205
Ensembl chr 3:142,936,985...143,043,197
G
Cdx2
caudal type homeo box 2
involved_in
ISO
(PMID:22015720)
RGD
PMID:22015720
NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
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Gata4
GATA binding protein 4
acts_upstream_of_or_within
ISO
(PMID:9566909)
RGD
PMID:9566909
NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
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Gata5
GATA binding protein 5
acts_upstream_of_or_within
ISO
(PMID:9566909)
RGD
PMID:9566909
NCBI chr 3:167,418,563...167,426,751
Ensembl chr 3:167,418,565...167,426,751
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Gata6
GATA binding protein 6
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:9566909) GO_REF:0000107
RGD Ensembl
PMID:9566909
GO_REF:0000107
NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
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Ptk6
protein tyrosine kinase 6
involved_in
ISO
(PMID:16782882)
RGD
PMID:16782882
NCBI chr 3:168,307,073...168,315,664
Ensembl chr 3:168,307,073...168,315,664
G
Sav1
salvador family WW domain containing protein 1
acts_upstream_of_or_within
ISO
MGI:3790763 (PMID:18369314)
RGD
PMID:18369314
NCBI chr 6:88,478,536...88,500,121
Ensembl chr 6:88,478,539...88,499,968
G
Sox9
SRY-box transcription factor 9
acts_upstream_of
ISO
MGI:2429649 (PMID:17681175)
RGD
PMID:17681175
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
G
Yap1
Yes1 associated transcriptional regulator
acts_upstream_of
ISO
(PMID:17980593)
RGD
PMID:17980593
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
G
Cdkn1a
cyclin-dependent kinase inhibitor 1A
IEP
RGD
PMID:20466941
RGD:8662316
NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585
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Fzd5
frizzled class receptor 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15778706)
Ensembl RGD
PMID:15778706
GO_REF:0000107
NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457
G
Hif1a
hypoxia inducible factor 1 subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2384429 (PMID:20808783)
Ensembl RGD
PMID:20808783
GO_REF:0000107
NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
G
Hoxa5
homeo box A5
acts_upstream_of_or_within
ISO
MGI:2150397 (PMID:10564089)
RGD
PMID:10564089
NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234
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Tmigd1
transmembrane and immunoglobulin domain containing 1
acts_upstream_of_or_within
ISO
MGI:6506201 (PMID:33129760)
RGD
PMID:33129760
NCBI chr10:61,739,071...61,751,025
Ensembl chr10:61,736,462...61,751,025
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Tyms
thymidylate synthetase
IEP
RGD
PMID:1260861
RGD:2317427
NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
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Aldh1a1
aldehyde dehydrogenase 1 family, member A1
IEP
RGD
PMID:15964596
RGD:1643113
NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
IEP
RGD
PMID:15964596
RGD:1643113
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
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Arg2
arginase 2
IEP
RGD
PMID:10050048
RGD:4144052
NCBI chr 6:97,936,002...97,961,379
Ensembl chr 6:97,936,002...97,961,378
G
Asl
argininosuccinate lyase
IEP
RGD
PMID:9544996
RGD:4139911
NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662
G
Ass1
argininosuccinate synthase 1
IEP
RGD
PMID:9544996
RGD:4139911
NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903
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Casp1
caspase 1
IEP
RGD
PMID:12396474
RGD:5130192
NCBI chr 8:2,587,812...2,597,403
Ensembl chr 8:2,587,831...2,597,383
G
Cps1
carbamoyl-phosphate synthase 1
IEP
RGD
PMID:9544996
RGD:4139911
NCBI chr 9:68,614,153...68,737,037
Ensembl chr 9:68,614,153...68,737,033
G
Ctnnb1
catenin beta 1
IEP
RGD
PMID:17356920
RGD:2289844
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Dab1
DAB adaptor protein 1
IEP
RGD
PMID:19946030
RGD:2317766
NCBI chr 5:118,392,953...119,513,625
Ensembl chr 5:119,140,533...119,510,552
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Egfr
epidermal growth factor receptor
IEP
RGD
PMID:7926492
RGD:10395256
NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382
G
Foxf1
forkhead box F1
involved_in
ISO
(PMID:19500772)
RGD
PMID:19500772
NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738
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Hmgcs2
3-hydroxy-3-methylglutaryl-CoA synthase 2
IEP
RGD
PMID:8620869
RGD:2326125
NCBI chr 2:185,875,609...185,903,505
Ensembl chr 2:185,875,616...185,902,130
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Otc
ornithine transcarbamylase
IEP
RGD
PMID:9544996
RGD:4139911
NCBI chr X:12,453,834...12,529,954
Ensembl chr X:12,453,834...12,566,918
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Reg1a
regenerating family member 1 alpha
IEP
RGD
PMID:7720628
RGD:9850133
NCBI chr 4:110,892,451...110,895,115
Ensembl chr 4:110,892,453...110,895,570
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Reg3b
regenerating family member 3 beta
IEP
RGD
PMID:7720628
RGD:9850133
NCBI chr 4:110,861,775...110,865,015
Ensembl chr 4:110,861,775...110,865,015
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Reln
reelin
IEP
RGD
PMID:19946030
RGD:2317766
NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211
G
Rxra
retinoid X receptor alpha
IEP
RGD
PMID:15964596
RGD:1643113
NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
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Smo
smoothened, frizzled class receptor
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:11517919) GO_REF:0000024
Ensembl RGD UniProt
PMID:11517919
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
G
Wnt5a
Wnt family member 5A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857617 (PMID:19100728)
Ensembl RGD
PMID:19100728
GO_REF:0000107
NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
G
Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2149672 (PMID:18173746)
Ensembl RGD
PMID:18173746
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
G
Tlr9
toll-like receptor 9
involved_in
ISO
(PMID:17128265)
RGD
PMID:17128265
NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796
G
Nkx2-3
NK2 homeobox 3
acts_upstream_of_or_within
ISO
MGI:2448069 (PMID:10926756)
RGD
PMID:10926756
NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083
G
Ednrb
endothelin receptor type B
acts_upstream_of_or_within
ISO
MGI:1856149 (PMID:8582288)
RGD
PMID:8582288
NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
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Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(PMID:29700203)
RGD
PMID:29700203
NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
G
Kcnq1
potassium voltage-gated channel subfamily Q member 1
involved_in
IEA ISO
GO_REF:0000107 MGI:2389447 (PMID:15385447)
Ensembl RGD
PMID:15385447
GO_REF:0000107
NCBI chr 1:198,291,711...198,624,683
Ensembl chr 1:198,291,766...198,624,669
G
Ascl1
achaete-scute family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857470 (PMID:18173746)
RGD
PMID:18173746
NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993
G
Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:2149672 (PMID:18173746)
Ensembl RGD
PMID:18173746
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
G
Foxl1
forkhead box L1
acts_upstream_of_or_within
ISO
MGI:2178230 (PMID:9203584)
RGD
PMID:9203584
NCBI chr19:49,197,269...49,200,682
Ensembl chr19:49,197,400...49,198,425
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