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ONTOLOGY REPORT - ANNOTATIONS


Term:proteolysis involved in protein catabolic process
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Accession:GO:0051603 term browser browse the term
Definition:The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Synonyms:exact_synonym: peptidolysis involved in cellular protein catabolic process;   peptidolysis involved in cellular protein catabolism;   proteolysis involved in cellular protein catabolic process
 related_synonym: peptidolysis during cellular protein catabolic process;   peptidolysis during cellular protein catabolism;   proteolysis during cellular protein catabolic process;   proteolysis during cellular protein catabolism


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proteolysis involved in protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in ISO (PMID:18485748)
(PMID:16611630)
BHF-UCL PMID:16611630 PMID:18485748 NCBI chrNW_004624759:20,749,548...21,092,816
Ensembl chrNW_004624759:20,898,761...21,088,838
JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in ISO (PMID:18485748) BHF-UCL PMID:18485748 NCBI chrNW_004624894:2,782,943...2,918,227
Ensembl chrNW_004624894:2,783,174...2,830,240
JBrowse link
G Casp8 caspase 8 involved_in ISO (PMID:10521396)
(PMID:32971525)
BHF-UCL
UniProt
PMID:10521396 PMID:32971525 NCBI chrNW_004624899:427,064...450,931
Ensembl chrNW_004624899:424,363...451,087
JBrowse link
G Clpp caseinolytic mitochondrial matrix peptidase proteolytic subunit involved_in ISO (PMID:11923310) UniProt PMID:11923310 NCBI chrNW_004624828:3,499,141...3,505,774
Ensembl chrNW_004624828:3,498,794...3,505,769
JBrowse link
G Clpx caseinolytic mitochondrial matrix peptidase chaperone subunit X involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624781:7,320,647...7,362,403
Ensembl chrNW_004624781:7,320,604...7,362,403
JBrowse link
G Cpa1 carboxypeptidase A1 ISO RGD PMID:15865404 RGD:1578424 NCBI chrNW_004624783:5,912,419...5,918,446
Ensembl chrNW_004624783:5,912,447...5,918,430
JBrowse link
G Ctsb cathepsin B involved_in ISO (PMID:22952693)
(PMID:12782676)
BHF-UCL
UniProt
PMID:12782676 PMID:22952693 NCBI chrNW_004624758:25,366,120...25,384,554
Ensembl chrNW_004624758:25,366,840...25,373,954
JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:11082042), (PMID:22952693)
(PMID:12782676)
BHF-UCL
UniProt
PMID:11082042 PMID:12782676 PMID:22952693 NCBI chrNW_004624772:19,013,189...19,026,756
Ensembl chrNW_004624772:19,015,835...19,025,588
JBrowse link
G Ctss cathepsin S involved_in ISO (PMID:22952693) BHF-UCL PMID:22952693 NCBI chrNW_004624772:18,421,905...18,446,857
Ensembl chrNW_004624772:18,419,736...18,438,786
JBrowse link
G Dnajc3 DnaJ heat shock protein family (Hsp40) member C3 involved_in ISO (PMID:18923430) BHF-UCL PMID:18923430 NCBI chrNW_004624879:2,369,332...2,434,433
Ensembl chrNW_004624879:2,369,237...2,434,433
JBrowse link
G Fap fibroblast activation protein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:3,273,339...3,346,207
Ensembl chrNW_004624732:3,275,025...3,345,977
JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23541922) Ensembl
MGI
PMID:23541922 GO_REF:0000107 NCBI chrNW_004624828:6,236,861...6,254,763
Ensembl chrNW_004624828:6,236,842...6,256,679
JBrowse link
G Gzma granzyme A involved_in ISO (PMID:12524539), (PMID:32299851) UniProt PMID:12524539 PMID:32299851 NCBI chrNW_004624759:4,177,857...4,185,325
Ensembl chrNW_004624759:4,177,857...4,185,324
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in ISO (PMID:18923430) BHF-UCL PMID:18923430 NCBI chrNW_004624760:9,986,529...9,991,261
Ensembl chrNW_004624760:9,986,656...9,995,252
JBrowse link
G Ide insulin degrading enzyme involved_in ISO
IEA
degradation of insulin, beta-endorphin and amyloid-beta peptide RGD
TreeGrafter
PMID:15749695 GO_REF:0000118 RGD:1626704 NCBI chrNW_004624737:3,708,309...3,822,390
Ensembl chrNW_004624737:3,702,985...3,835,776
JBrowse link
G Lgmn legumain involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624734:9,207,496...9,240,026
Ensembl chrNW_004624734:9,204,790...9,240,309
JBrowse link
G LOC101702156 granzyme B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624820:7,882,992...7,889,155
Ensembl chrNW_004624820:7,883,084...7,889,155
JBrowse link
G Lonp1 lon peptidase 1, mitochondrial involved_in ISO (PMID:17420247), (PMID:8248235) UniProt PMID:8248235 PMID:17420247 NCBI chrNW_004624828:4,494,786...4,516,772
Ensembl chrNW_004624828:4,494,813...4,516,510
JBrowse link
G Malt1 MALT1 paracaspase involved_in ISO (PMID:31133753) UniProt PMID:31133753 NCBI chrNW_004624792:4,148,258...4,223,431
Ensembl chrNW_004624792:4,148,453...4,217,548
JBrowse link
G Plg plasminogen ISO RGD PMID:7864083 PMID:12928439 RGD:1299253 RGD:2301095 NCBI chrNW_004624855:2,362,793...2,401,519
Ensembl chrNW_004624855:2,360,229...2,402,079
JBrowse link
G Psma6 proteasome 20S subunit alpha 6 involved_in ISO (PMID:16845397) BHF-UCL PMID:16845397 NCBI chrNW_004624838:1,449,362...1,474,597
Ensembl chrNW_004624838:1,449,266...1,486,382
JBrowse link
G Psmb1 proteasome 20S subunit beta 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624850:6,339,918...6,357,925
Ensembl chrNW_004624850:6,337,094...6,357,997
JBrowse link
G Psmb10 proteasome 20S subunit beta 10 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624746:18,442,865...18,445,731
Ensembl chrNW_004624746:18,442,478...18,445,731
JBrowse link
G Psmb11 proteasome subunit beta 11 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624820:9,498,320...9,499,222
Ensembl chrNW_004624820:9,498,320...9,499,222
JBrowse link
G Psmb2 proteasome 20S subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:18,653,691...18,688,037
Ensembl chrNW_004624764:18,650,839...18,688,035
JBrowse link
G Psmb3 proteasome 20S subunit beta 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:3,932,534...3,939,411
Ensembl chrNW_004624795:3,931,923...3,939,305
JBrowse link
G Psmb4 proteasome 20S subunit beta 4 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624772:19,124,327...19,126,731
Ensembl chrNW_004624772:19,124,386...19,126,627
JBrowse link
G Psmb5 proteasome 20S subunit beta 5 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624820:9,506,119...9,513,034
Ensembl chrNW_004624820:9,505,725...9,513,034
JBrowse link
G Psmb7 proteasome 20S subunit beta 7 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624760:10,678,800...10,738,008
Ensembl chrNW_004624760:10,678,673...10,738,009
JBrowse link
G Psmb9 proteasome 20S subunit beta 9 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624754:23,811,008...23,815,432
Ensembl chrNW_004624754:23,807,272...23,815,417
JBrowse link
G Rnf123 ring finger protein 123 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:3,617,488...3,645,797
Ensembl chrNW_004624730:3,618,269...3,645,797
JBrowse link
G Rspry1 ring finger and SPRY domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:28,808,364...28,862,125
Ensembl chrNW_004624746:28,808,364...28,862,113
JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624745:30,353,530...30,382,780
Ensembl chrNW_004624745:30,353,369...30,382,782
JBrowse link
G Ube2s ubiquitin conjugating enzyme E2 S involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624832:1,913,948...1,918,750
Ensembl chrNW_004624832:1,913,636...1,918,848
JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624787:7,358,426...7,610,872
Ensembl chrNW_004624787:7,358,441...7,608,483
JBrowse link
acrosome matrix dispersal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acr acrosin ISO RGD PMID:28859281 RGD:13464336 NCBI chrNW_004624752:42,847...49,438 JBrowse link
anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anapc1 anaphase promoting complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:458,670...570,799
Ensembl chrNW_004624749:460,699...569,545
JBrowse link
G Anapc10 anaphase promoting complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624853:3,992,351...4,059,254
Ensembl chrNW_004624853:3,992,414...4,059,215
JBrowse link
G Anapc11 anaphase promoting complex subunit 11 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624801:10,738,356...10,742,334
Ensembl chrNW_004624801:10,738,224...10,742,220
JBrowse link
G Anapc13 anaphase promoting complex subunit 13 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624730:10,805,200...10,811,341
Ensembl chrNW_004624730:10,805,250...10,810,853
JBrowse link
G Anapc15 anaphase promoting complex subunit 15 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624817:4,863,426...4,866,452
Ensembl chrNW_004624817:4,864,670...4,866,452
JBrowse link
G Anapc16 anaphase promoting complex subunit 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:6,009,255...6,031,023
Ensembl chrNW_004624754:6,009,151...6,023,908
JBrowse link
G Anapc2 anaphase promoting complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:760,815...772,116
Ensembl chrNW_004624760:760,749...772,855
JBrowse link
G Anapc4 anaphase promoting complex subunit 4 involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624755:7,013,769...7,047,292
Ensembl chrNW_004624755:7,013,763...7,047,424
JBrowse link
G Anapc5 anaphase promoting complex subunit 5 involved_in IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624747:21,847,948...21,881,501
Ensembl chrNW_004624747:21,844,453...21,881,847
JBrowse link
G Anapc7 anaphase promoting complex subunit 7 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624747:21,473,337...21,501,348
Ensembl chrNW_004624747:21,473,352...21,499,843
JBrowse link
G Cdc16 cell division cycle 16 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624793:151,508...186,342 JBrowse link
G Cdc20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624892:2,675,980...2,679,709
Ensembl chrNW_004624892:2,675,754...2,679,793
JBrowse link
G Cdc20b cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624759:4,112,012...4,174,838
Ensembl chrNW_004624759:4,109,203...4,176,824
JBrowse link
G Cdc23 cell division cycle 23 involved_in IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624743:31,012,262...31,036,639
Ensembl chrNW_004624743:31,012,720...31,036,762
JBrowse link
G Cdc26 cell division cycle 26 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624760:21,820,513...21,830,808
Ensembl chrNW_004624760:21,820,531...21,830,784
JBrowse link
G Cdc27 cell division cycle 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:2,026,433...2,105,626
Ensembl chrNW_004624849:2,026,425...2,092,857
JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10500095) MGI
Ensembl
PMID:10500095 GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727
JBrowse link
G Ecrg4 ECRG4 augurin precursor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20404145) Ensembl
TreeGrafter
MGI
PMID:20404145 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624749:9,947,366...9,956,876
Ensembl chrNW_004624749:9,947,188...9,956,983
JBrowse link
G Fbxo31 F-box protein 31 involved_in ISO (PMID:19412162) UniProt PMID:19412162 NCBI chrNW_004624746:3,034,458...3,078,230
Ensembl chrNW_004624746:3,043,600...3,078,223
JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:6,236,861...6,254,763
Ensembl chrNW_004624828:6,236,842...6,256,679
JBrowse link
G LOC101725790 anaphase-promoting complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624758:3,211,714...3,212,506 JBrowse link
G Ube2c ubiquitin conjugating enzyme E2 C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624790:8,756,758...8,760,078
Ensembl chrNW_004624790:8,751,662...8,760,057
JBrowse link
G Ube2s ubiquitin conjugating enzyme E2 S involved_in ISO (PMID:19820702), (PMID:19822757) UniProt PMID:19820702 PMID:19822757 NCBI chrNW_004624832:1,913,948...1,918,750
Ensembl chrNW_004624832:1,913,636...1,918,848
JBrowse link
CAT tailing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nemf nuclear export mediator factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:18,917,097...18,963,490
Ensembl chrNW_004624731:18,917,191...18,961,764
JBrowse link
cytoplasm protein quality control term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624764:4,223,784...4,358,923
Ensembl chrNW_004624764:4,223,784...4,358,885
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517
JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501
JBrowse link
cytoplasm protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:7,856,822...7,865,644
Ensembl chrNW_004624828:7,856,470...7,869,926
JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624764:4,223,784...4,358,923
Ensembl chrNW_004624764:4,223,784...4,358,885
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517
JBrowse link
ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amfr autocrine motility factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624757:136,289...179,743
Ensembl chrNW_004624757:136,283...179,138
JBrowse link
G Ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,780,287...5,787,543
Ensembl chrNW_004624823:5,780,484...5,787,007
JBrowse link
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624749:28,983,753...28,986,785
Ensembl chrNW_004624749:28,983,802...28,986,643
JBrowse link
G Bag6 BAG cochaperone 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073
JBrowse link
G Brsk2 BR serine/threonine kinase 2 involved_in ISO (PMID:23907667) ParkinsonsUK-UCL PMID:23907667 NCBI chrNW_004624766:21,296,115...21,334,054
Ensembl chrNW_004624766:21,296,120...21,334,040
JBrowse link
G Calr calreticulin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624901:511,295...515,208
Ensembl chrNW_004624901:511,052...516,757
JBrowse link
G Calr3 calreticulin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624908:949,709...962,114
Ensembl chrNW_004624908:949,783...961,667
JBrowse link
G Canx calnexin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:42,588,680...42,616,624 JBrowse link
G Ccdc47 coiled-coil domain containing 47 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25009997) Ensembl
MGI
PMID:25009997 GO_REF:0000107 NCBI chrNW_004624849:1,237,364...1,282,588
Ensembl chrNW_004624849:1,237,370...1,282,611
JBrowse link
G Clgn calmegin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004625006:28,014...88,801
Ensembl chrNW_004625006:30,037...88,167
JBrowse link
G Derl1 derlin 1 involved_in ISO (PMID:18555783), (PMID:24089527), (PMID:25239945)
(PMID:15215856), (PMID:17872946)
ParkinsonsUK-UCL
UniProt
PMID:15215856 PMID:17872946 PMID:18555783 PMID:24089527 PMID:25239945 NCBI chrNW_004624735:31,832,711...31,857,687
Ensembl chrNW_004624735:31,832,701...31,857,687
JBrowse link
G Derl2 derlin 2 involved_in ISO (PMID:16449189) UniProt PMID:16449189 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288
JBrowse link
G Derl3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:10,357,560...10,359,779
Ensembl chrNW_004624747:10,357,627...10,359,779
JBrowse link
G Dnajb12 DnaJ heat shock protein family (Hsp40) member B12 involved_in ISO (PMID:21148293), (PMID:21150129) UniProt PMID:21148293 PMID:21150129 NCBI chrNW_004624754:6,131,180...6,149,597
Ensembl chrNW_004624754:6,131,271...6,149,522
JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,730,553...5,737,668
Ensembl chrNW_004624823:5,730,386...5,738,459
JBrowse link
G Dnajb9 DnaJ heat shock protein family (Hsp40) member B9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:21,187,581...21,193,345
Ensembl chrNW_004624739:21,187,581...21,193,337
JBrowse link
G Dnajc10 DnaJ heat shock protein family (Hsp40) member C10 involved_in ISO (PMID:18400946)
(PMID:18653895), (PMID:21329881)
UniProt PMID:18400946 PMID:18653895 PMID:21329881 NCBI chrNW_004624844:4,499,653...4,544,596
Ensembl chrNW_004624844:4,499,699...4,543,391
JBrowse link
G Ecpas Ecm29 proteasome adaptor and scaffold involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:67,558...194,653
Ensembl chrNW_004624758:67,650...195,122
JBrowse link
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in
acts_upstream_of_or_within
ISO (PMID:21062743), (PMID:25092655)
(PMID:11375934)
ParkinsonsUK-UCL
MGI
PMID:11375934 PMID:21062743 PMID:25092655 NCBI chrNW_004624773:15,846,347...15,878,312
Ensembl chrNW_004624773:15,846,553...15,878,803
JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:15537790), (PMID:25092655) ParkinsonsUK-UCL PMID:15537790 PMID:25092655 NCBI chrNW_004624842:4,259,551...4,288,181
Ensembl chrNW_004624842:4,259,605...4,292,518
JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in ISO (PMID:25092655)
(PMID:16431915)
ARUK-UCL
ParkinsonsUK-UCL
PMID:16431915 PMID:25092655 NCBI chrNW_004624814:8,839,016...8,924,161
Ensembl chrNW_004624814:8,838,997...8,922,936
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (PMID:17707796) UniProt PMID:17707796 NCBI chrNW_004624749:15,867,444...15,950,757
Ensembl chrNW_004624749:15,869,569...15,950,757
JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624833:7,964,815...7,992,277
Ensembl chrNW_004624833:7,964,810...7,992,582
JBrowse link
G Erlin1 ER lipid raft associated 1 involved_in ISO (PMID:19240031) UniProt PMID:19240031 NCBI chrNW_004624737:11,977,397...12,018,437
Ensembl chrNW_004624737:11,977,397...12,018,438
JBrowse link
G Erlin2 ER lipid raft associated 2 involved_in ISO (PMID:19240031) UniProt PMID:19240031 NCBI chrNW_004624780:5,844,473...5,861,493
Ensembl chrNW_004624780:5,843,141...5,862,039
JBrowse link
G Faf1 Fas associated factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624859:2,105,840...2,628,074
Ensembl chrNW_004624859:2,105,884...2,630,090
JBrowse link
G Faf2 Fas associated factor family member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:13,608,993...13,674,200
Ensembl chrNW_004624733:13,608,360...13,674,175
JBrowse link
G Fbxo2 F-box protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15723043) MGI
TreeGrafter
PMID:15723043 GO_REF:0000118 NCBI chrNW_004624818:1,300,191...1,311,245
Ensembl chrNW_004624818:1,299,067...1,309,667
JBrowse link
G Fbxo27 F-box protein 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,370,117...12,375,180 JBrowse link
G Fbxo6 F-box protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:1,286,819...1,292,565
Ensembl chrNW_004624818:1,286,820...1,292,755
JBrowse link
G Foxred2 FAD dependent oxidoreductase domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:11,216,852...11,238,031
Ensembl chrNW_004624752:11,216,856...11,234,729
JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 involved_in ISO (PMID:21636303) ParkinsonsUK-UCL PMID:21636303 NCBI chrNW_004624740:26,465,497...26,479,332
Ensembl chrNW_004624740:26,465,483...26,479,337
JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085
JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 involved_in ISO (PMID:18264092) UniProt PMID:18264092 NCBI chrNW_004624750:4,738,563...4,752,227
Ensembl chrNW_004624750:4,737,894...4,752,221
JBrowse link
G Jkamp JNK1/MAPK8 associated membrane protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:41,610,973...41,625,736
Ensembl chrNW_004624734:41,610,985...41,625,707
JBrowse link
G LOC101708651 calreticulin-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624859:1,523,187...1,553,612 JBrowse link
G Man1a1 mannosidase alpha class 1A member 1 involved_in ISO (PMID:27108681) UniProt PMID:27108681 NCBI chrNW_004624798:10,986,465...11,117,182
Ensembl chrNW_004624798:10,986,519...11,117,650
JBrowse link
G Man1b1 mannosidase alpha class 1B member 1 involved_in
acts_upstream_of_or_within
ISO (PMID:18003979), (PMID:21062743)
(PMID:15294975)
ParkinsonsUK-UCL
MGI
PMID:15294975 PMID:18003979 PMID:21062743 NCBI chrNW_004624760:813,657...826,020
Ensembl chrNW_004624760:813,045...825,153
JBrowse link
G Marchf6 membrane associated ring-CH-type finger 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624751:7,715,065...7,781,320
Ensembl chrNW_004624751:7,715,007...7,780,460
JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor involved_in ISO PMID:12847084
(PMID:12847084)
ComplexPortal PMID:12847084 RGD:10047330 NCBI chrNW_004624801:10,531,107...10,589,502
Ensembl chrNW_004624801:10,533,064...10,589,096
JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624802:10,221,633...10,252,008
Ensembl chrNW_004624802:10,222,259...10,252,039
JBrowse link
G Rcn3 reticulocalbin 3 involved_in ISO (PMID:26252542) UniProt PMID:26252542 NCBI chrNW_004624832:4,699,294...4,709,188
Ensembl chrNW_004624832:4,699,299...4,709,150
JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624843:1,217,655...1,362,406
Ensembl chrNW_004624843:1,219,808...1,360,135
JBrowse link
G Rnf103 ring finger protein 103 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:16,689,010...16,712,673
Ensembl chrNW_004624749:16,688,389...16,708,419
JBrowse link
G Rnf121 ring finger protein 121 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624817:4,968,790...5,051,573
Ensembl chrNW_004624817:4,968,684...5,051,871
JBrowse link
G Rnf139 ring finger protein 139 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:30,715,373...30,726,591
Ensembl chrNW_004624735:30,715,384...30,726,862
JBrowse link
G Rnf145 ring finger protein 145 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:30,239,475...30,288,171
Ensembl chrNW_004624733:30,245,689...30,290,684
JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:7,642,198...7,693,944
Ensembl chrNW_004624747:7,641,916...7,694,033
JBrowse link
G Rnf5 ring finger protein 5 involved_in ISO (PMID:19269966), (PMID:24019521) UniProt PMID:19269966 PMID:24019521 NCBI chrNW_004624754:24,141,072...24,143,460
Ensembl chrNW_004624754:24,141,072...24,143,489
JBrowse link
G Sdf2l1 stromal cell derived factor 2 like 1 acts_upstream_of_or_within ISO PMID:23444373 MGI PMID:23444373 RGD:8554667 NCBI chrNW_004624747:1,195,043...1,197,105
Ensembl chrNW_004624747:1,195,055...1,197,105
JBrowse link
G Sec61b SEC61 translocon subunit beta involved_in ISO (PMID:8945469) UniProt PMID:8945469 NCBI chrNW_004624825:1,762,735...1,771,271
Ensembl chrNW_004624825:1,762,734...1,771,233
JBrowse link
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:20,532,676...20,596,847
Ensembl chrNW_004624734:20,532,235...20,595,784
JBrowse link
G Selenos selenoprotein S involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624768:3,539,369...3,550,716
Ensembl chrNW_004624768:3,539,465...3,550,211
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528
JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B involved_in ISO (PMID:22607976) UniProt PMID:22607976 NCBI chrNW_004624788:9,614,932...9,726,773
Ensembl chrNW_004624788:9,615,658...9,725,240
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:23990462) ParkinsonsUK-UCL PMID:23990462 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249
JBrowse link
G Syvn1 synoviolin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21245296) MGI
TreeGrafter
PMID:21245296 GO_REF:0000118 NCBI chrNW_004624767:21,269,909...21,276,739
Ensembl chrNW_004624767:21,270,841...21,275,653
JBrowse link
G Tmem129 transmembrane protein 129, E3 ubiquitin ligase involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chrNW_004624755:25,694,391...25,699,294
Ensembl chrNW_004624755:25,694,026...25,699,489
JBrowse link
G Tmem67 transmembrane protein 67 involved_in ISO (PMID:19815549) UniProt PMID:19815549 NCBI chrNW_004624763:1,219,779...1,281,297
Ensembl chrNW_004624763:1,219,827...1,264,071
JBrowse link
G Tmub1 transmembrane and ubiquitin like domain containing 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624800:5,538,328...5,541,024
Ensembl chrNW_004624800:5,538,279...5,541,024
JBrowse link
G Tmub2 transmembrane and ubiquitin like domain containing 2 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624795:792,835...796,472
Ensembl chrNW_004624795:791,733...794,843
JBrowse link
G Tor1a torsin family 1 member A involved_in ISO (PMID:17200151) UniProt PMID:17200151 NCBI chrNW_004624760:5,602,011...5,606,784
Ensembl chrNW_004624760:5,601,943...5,606,162
JBrowse link
G Trim13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624748:4,683,518...4,765,944 JBrowse link
G Trim25 tripartite motif containing 25 involved_in ISO (PMID:24810856) ParkinsonsUK-UCL PMID:24810856 NCBI chrNW_004624795:11,967,908...11,986,707
Ensembl chrNW_004624795:11,971,610...11,986,608
JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in
acts_upstream_of_or_within
ISO (PMID:22607976)
(PMID:11278356)
UniProt
MGI
PMID:11278356 PMID:22607976 NCBI chrNW_004624745:30,353,530...30,382,780
Ensembl chrNW_004624745:30,353,369...30,382,782
JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 involved_in
acts_upstream_of_or_within
ISO (PMID:22607976)
(PMID:24020373)
(PMID:21245296)
UniProt
MGI
PMID:21245296 PMID:22607976 PMID:24020373 NCBI chrNW_004624799:4,811,686...4,838,708
Ensembl chrNW_004624799:4,811,649...4,841,511
JBrowse link
G Ube2j2 ubiquitin conjugating enzyme E2 J2 involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chrNW_004624818:8,326,592...8,347,108
Ensembl chrNW_004624818:8,326,781...8,347,370
JBrowse link
G Ube4a ubiquitination factor E4A involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624784:13,754,234...13,792,616 JBrowse link
G Ube4b ubiquitination factor E4B involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624818:2,448,809...2,561,947
Ensembl chrNW_004624818:2,447,368...2,562,128
JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251
JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126
JBrowse link
G Ubxn4 UBX domain protein 4 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624732:35,055,726...35,113,016
Ensembl chrNW_004624732:35,056,022...35,110,987
JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:19275885) UniProt PMID:19275885 NCBI chrNW_004624828:5,257,960...5,265,371
Ensembl chrNW_004624828:5,258,023...5,264,989
JBrowse link
G Ubxn8 UBX domain protein 8 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624780:13,378,206...13,409,745 JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:110,090...132,145
Ensembl chrNW_004624747:110,090...132,097
JBrowse link
G Uggt2 UDP-glucose glycoprotein glucosyltransferase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624879:2,449,128...2,642,884
Ensembl chrNW_004624879:2,450,316...2,642,954
JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO (PMID:28437467) MGI PMID:28437467 NCBI chrNW_004624782:3,639,955...3,654,026
Ensembl chrNW_004624782:3,640,214...3,652,324
JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:3,134,419...3,145,512
Ensembl chrNW_004624730:3,133,595...3,146,221
JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501
JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in ISO (PMID:20160352) ParkinsonsUK-UCL PMID:20160352 NCBI chrNW_004624755:22,818,653...22,841,717
Ensembl chrNW_004624755:22,824,143...22,841,850
JBrowse link
G Yod1 YOD1 deubiquitinase involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624807:4,443,653...4,448,759
Ensembl chrNW_004624807:4,443,650...4,446,373
JBrowse link
mannoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in ISO (PMID:25092655) ParkinsonsUK-UCL PMID:25092655 NCBI chrNW_004624773:15,846,347...15,878,312
Ensembl chrNW_004624773:15,846,553...15,878,803
JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:25092655) ParkinsonsUK-UCL PMID:25092655 NCBI chrNW_004624842:4,259,551...4,288,181
Ensembl chrNW_004624842:4,259,605...4,292,518
JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in ISO (PMID:25092655)
(PMID:16431915)
ParkinsonsUK-UCL PMID:16431915 PMID:25092655 NCBI chrNW_004624814:8,839,016...8,924,161
Ensembl chrNW_004624814:8,838,997...8,922,936
JBrowse link
G Man1b1 mannosidase alpha class 1B member 1 involved_in ISO (PMID:10521544)
(PMID:18003979)
ParkinsonsUK-UCL PMID:10521544 PMID:18003979 NCBI chrNW_004624760:813,657...826,020
Ensembl chrNW_004624760:813,045...825,153
JBrowse link
mannose trimming involved in glycoprotein ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Man1a1 mannosidase alpha class 1A member 1 involved_in ISO (PMID:27108681) UniProt PMID:27108681 NCBI chrNW_004624798:10,986,465...11,117,182
Ensembl chrNW_004624798:10,986,519...11,117,650
JBrowse link
membrane protein proteolysis involved in retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hm13 histocompatibility minor 13 involved_in ISO (PMID:25239945) ParkinsonsUK-UCL PMID:25239945 NCBI chrNW_004624741:924,040...977,646
Ensembl chrNW_004624741:921,023...977,703
JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624843:1,217,655...1,362,406
Ensembl chrNW_004624843:1,219,808...1,360,135
JBrowse link
mitochondrial protein quality control term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 involved_in ISO (PMID:26504172), (PMID:30683687), (PMID:34718584) UniProt PMID:26504172 PMID:30683687 PMID:34718584 NCBI chrNW_004624770:19,590,829...19,631,663
Ensembl chrNW_004624770:19,591,215...19,631,722
JBrowse link
G Oxa1l OXA1L mitochondrial inner membrane protein involved_in ISO (PMID:38199007) UniProt PMID:38199007 NCBI chrNW_004624820:9,757,615...9,763,686
Ensembl chrNW_004624820:9,757,840...9,763,640
JBrowse link
G Tmem126a transmembrane protein 126A involved_in ISO (PMID:38199007) UniProt PMID:38199007 NCBI chrNW_004624845:4,264,497...4,272,973 JBrowse link
modification-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isg15 ISG15 ubiquitin like modifier acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004624818:8,510,657...8,511,749 JBrowse link
G Uba7 ubiquitin like modifier activating enzyme 7 acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004624730:3,720,516...3,729,586
Ensembl chrNW_004624730:3,718,573...3,730,097
JBrowse link
G Ube2l6 ubiquitin conjugating enzyme E2 L6 acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004624864:3,103,656...3,113,349
Ensembl chrNW_004624864:3,108,380...3,113,349
JBrowse link
negative regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624863:679,049...694,765
Ensembl chrNW_004624863:678,953...694,505
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528
JBrowse link
G Svip small VCP interacting protein involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624766:13,724,052...13,751,774
Ensembl chrNW_004624766:13,744,230...13,751,725
JBrowse link
G Ubxn1 UBX domain protein 1 involved_in ISO (PMID:21135095) ParkinsonsUK-UCL PMID:21135095 NCBI chrNW_004624926:1,179,498...1,182,445
Ensembl chrNW_004624926:1,179,584...1,182,180
JBrowse link
G Ubxn2a UBX domain protein 2A involved_in ISO (PMID:26265139) UniProt PMID:26265139 NCBI chrNW_004624738:6,313,925...6,341,999
Ensembl chrNW_004624738:6,323,404...6,341,996
JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in ISO (PMID:19135427) ParkinsonsUK-UCL PMID:19135427 NCBI chrNW_004624770:10,741,247...10,769,837 JBrowse link
G Usp25 ubiquitin specific peptidase 25 involved_in ISO (PMID:22590560) ParkinsonsUK-UCL PMID:22590560 NCBI chrNW_004624745:4,170,328...4,306,604
Ensembl chrNW_004624745:4,169,938...4,305,122
JBrowse link
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:21,698,689...21,709,907
Ensembl chrNW_004624760:21,698,587...21,711,822
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chrNW_004624746:11,393,439...11,405,152
Ensembl chrNW_004624746:11,393,439...11,405,126
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO PMID:17517623
(PMID:17517623)
ARUK-UCL PMID:17517623 RGD:13514081 NCBI chrNW_004624754:15,609,932...15,615,580
Ensembl chrNW_004624754:15,609,920...15,614,263
JBrowse link
G Lamp3 lysosomal associated membrane protein 3 involved_in ISO (PMID:25681212) ParkinsonsUK-UCL PMID:25681212 NCBI chrNW_004624730:73,264,110...73,298,951 JBrowse link
G LOC101701770 protein SCO1 homolog, mitochondrial acts_upstream_of_or_within ISO (PMID:25683716) MGI PMID:25683716 NCBI chrNW_004624786:13,038,384...13,053,250
Ensembl chrNW_004624786:13,036,426...13,053,210
JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 involved_in ISO (PMID:29295817) UniProt PMID:29295817 NCBI chrNW_004624732:5,889,181...5,928,471 JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:21874017) UniProt PMID:21874017 NCBI chrNW_004624891:1,907,233...2,429,714
Ensembl chrNW_004624891:1,908,044...2,425,144
JBrowse link
G Prkcg protein kinase C gamma involved_in ISO (PMID:23185022) UniProt PMID:23185022 NCBI chrNW_004624832:2,548,286...2,566,365
Ensembl chrNW_004624832:2,547,535...2,566,402
JBrowse link
G Psme3ip1 proteasome activator subunit 3 interacting protein 1 involved_in ISO (PMID:29934401) UniProt PMID:29934401 NCBI chrNW_004624746:28,862,204...28,900,758
Ensembl chrNW_004624746:28,862,420...28,900,668
JBrowse link
G Psmf1 proteasome inhibitor subunit 1 involved_in ISO (PMID:10764772) UniProt PMID:10764772 NCBI chrNW_004624741:2,402,616...2,443,461
Ensembl chrNW_004624741:2,409,187...2,443,071
JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (PMID:25088257) ParkinsonsUK-UCL PMID:25088257 NCBI chrNW_004624730:3,134,419...3,145,512
Ensembl chrNW_004624730:3,133,595...3,146,221
JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag5 BAG cochaperone 5 involved_in ISO (PMID:24475098) ParkinsonsUK-UCL PMID:24475098 NCBI chrNW_004624734:1,315,052...1,320,627 JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:18678708) UniProt PMID:18678708 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073
JBrowse link
G Camlg calcium modulating ligand involved_in ISO (PMID:20553626) UniProt PMID:20553626 NCBI chrNW_004624733:12,298,452...12,307,684
Ensembl chrNW_004624733:12,298,018...12,307,721
JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in ISO (PMID:23398316) UniProt PMID:23398316 NCBI chrNW_004624758:18,106,621...18,120,910
Ensembl chrNW_004624758:18,106,606...18,120,907
JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723
JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004624741:1,566,380...1,635,365 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004624746:28,012,543...28,064,610
Ensembl chrNW_004624746:28,012,556...28,060,413
JBrowse link
G Csnk2b casein kinase 2 beta involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004624754:24,533,134...24,538,233 JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:28263186) UniProt PMID:28263186 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504
JBrowse link
G Eif3h eukaryotic translation initiation factor 3 subunit H involved_in ISO (PMID:32269044) FlyBase PMID:32269044 NCBI chrNW_004624763:14,938,624...15,027,001
Ensembl chrNW_004624763:14,935,271...15,027,010
JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624822:6,621,609...8,069,590
Ensembl chrNW_004624822:6,621,909...7,380,047
JBrowse link
G Hfe homeostatic iron regulator involved_in ISO (PMID:24904118) BHF-UCL PMID:24904118 NCBI chrNW_004624756:821,738...831,482
Ensembl chrNW_004624756:823,947...831,376
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chrNW_004624754:15,609,932...15,615,580
Ensembl chrNW_004624754:15,609,920...15,614,263
JBrowse link
G Klhl40 kelch like family member 40 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:24960163) MGI
TreeGrafter
PMID:24960163 GO_REF:0000118 NCBI chrNW_004624730:77,004,787...77,012,643
Ensembl chrNW_004624730:77,007,063...77,011,413
JBrowse link
G Map1a microtubule associated protein 1A involved_in ISO (PMID:26609151) ARUK-UCL PMID:26609151 NCBI chrNW_004624804:10,611,657...10,632,199
Ensembl chrNW_004624804:10,611,672...10,630,881
JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004624923:952,782...1,062,391 JBrowse link
G N4bp1 NEDD4 binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624914:2,319,809...2,369,128
Ensembl chrNW_004624914:2,319,474...2,369,078
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:22522597) UniProt PMID:22522597 NCBI chrNW_004624832:6,144,260...6,154,172
Ensembl chrNW_004624832:6,145,749...6,154,411
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in ISO (PMID:26678539) UniProt PMID:26678539 NCBI chrNW_004624903:1,863,110...1,912,299
Ensembl chrNW_004624903:1,863,337...1,910,177
JBrowse link
G Park7 Parkinsonism associated deglycase acts_upstream_of ISO (PMID:17015834) ParkinsonsUK-UCL PMID:17015834 NCBI chrNW_004624818:3,900,917...3,915,457
Ensembl chrNW_004624818:3,900,917...3,911,042
JBrowse link
G Pbk PDZ binding kinase acts_upstream_of_or_within ISO (PMID:21715333) MGI PMID:21715333 NCBI chrNW_004624758:22,603,076...22,625,817
Ensembl chrNW_004624758:22,603,039...22,625,763
JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in ISO (PMID:24492612) UniProt PMID:24492612 NCBI chrNW_004624735:23,101,075...23,171,195
Ensembl chrNW_004624735:23,101,075...23,171,145
JBrowse link
G Rgs19 regulator of G protein signaling 19 involved_in ISO (PMID:11546783) BHF-UCL PMID:11546783 NCBI chrNW_004624741:29,700,033...29,705,297
Ensembl chrNW_004624741:29,700,045...29,705,206
JBrowse link
G Rpl11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:8,258,656...8,262,842
Ensembl chrNW_004624764:8,258,709...8,266,016
JBrowse link
G Rybp RING1 and YY1 binding protein involved_in ISO (PMID:27060496) UniProt PMID:27060496 NCBI chrNW_004624773:6,899,927...6,993,434
Ensembl chrNW_004624773:6,899,927...6,993,526
JBrowse link
G Senp1 SUMO specific peptidase 1 acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004624816:4,173,321...4,231,711
Ensembl chrNW_004624816:4,179,890...4,232,312
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:16611981) MGI PMID:16611981 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chrNW_004624730:73,696,734...73,856,082
Ensembl chrNW_004624730:73,696,749...73,856,082
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chrNW_004624905:240,760...244,656
Ensembl chrNW_004624905:240,760...244,656
JBrowse link
G Tlk2 tousled like kinase 2 involved_in ISO (PMID:20016786) UniProt PMID:20016786 NCBI chrNW_004624849:24,536...150,142
Ensembl chrNW_004624849:24,867...151,002
JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within ISO (PMID:31537781) MGI PMID:31537781 NCBI chrNW_004624784:13,913,218...13,931,581
Ensembl chrNW_004624784:13,913,225...13,931,581
JBrowse link
G Ubxn1 UBX domain protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624926:1,179,498...1,182,445
Ensembl chrNW_004624926:1,179,584...1,182,180
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:23770237) UniProt PMID:23770237 NCBI chrNW_004624814:529,100...568,387
Ensembl chrNW_004624814:529,084...567,666
JBrowse link
G Usp26 ubiquitin specific peptidase 26 involved_in ISO (PMID:28839133) UniProt PMID:28839133 NCBI chrNW_004624797:12,724,584...12,797,308 JBrowse link
G Usp38 ubiquitin specific peptidase 38 involved_in ISO (PMID:34102342) UniProt PMID:34102342 NCBI chrNW_004624853:2,485,347...2,519,165
Ensembl chrNW_004624853:2,485,332...2,518,070
JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISO (PMID:26678539) UniProt PMID:26678539 NCBI chrNW_004624824:6,277,111...6,338,051
Ensembl chrNW_004624824:6,276,354...6,338,227
JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:14,403,361...14,527,854
Ensembl chrNW_004624762:14,405,560...14,527,639
JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004624805:6,813,100...6,898,686 JBrowse link
negative regulation of proteolysis involved in protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efna1 ephrin A1 involved_in ISO (PMID:24217950) ARUK-UCL PMID:24217950 NCBI chrNW_004624885:2,382,712...2,388,805
Ensembl chrNW_004624885:2,383,045...2,389,107
JBrowse link
G Epha4 EPH receptor A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:3,555,273...3,697,794
Ensembl chrNW_004624823:3,555,288...3,698,990
JBrowse link
G Ufsp2 UFM1 specific peptidase 2 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004624769:16,254,446...16,281,099
Ensembl chrNW_004624769:16,254,446...16,281,025
JBrowse link
negative regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Derl2 derlin 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288
JBrowse link
G Derl3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:10,357,560...10,359,779
Ensembl chrNW_004624747:10,357,627...10,359,779
JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624833:7,964,815...7,992,277
Ensembl chrNW_004624833:7,964,810...7,992,582
JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624802:10,221,633...10,252,008
Ensembl chrNW_004624802:10,222,259...10,252,039
JBrowse link
G Svip small VCP interacting protein involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624766:13,724,052...13,751,774
Ensembl chrNW_004624766:13,744,230...13,751,725
JBrowse link
G Ubac2 UBA domain containing 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624793:11,658,268...11,824,632
Ensembl chrNW_004624793:11,657,526...11,824,570
JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624745:30,353,530...30,382,780
Ensembl chrNW_004624745:30,353,369...30,382,782
JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624799:4,811,686...4,838,708
Ensembl chrNW_004624799:4,811,649...4,841,511
JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISO (PMID:24068323) ParkinsonsUK-UCL PMID:24068323 NCBI chrNW_004624807:4,443,653...4,448,759
Ensembl chrNW_004624807:4,443,650...4,446,373
JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pabpn1l PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chrNW_004624746:776,692...779,187
Ensembl chrNW_004624746:776,677...779,555
JBrowse link
G Styx serine/threonine/tyrosine interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:16,342,926...16,384,673
Ensembl chrNW_004624731:16,352,503...16,384,624
JBrowse link
negative regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks1a ankyrin repeat and sterile alpha motif domain containing 1A acts_upstream_of_or_within ISO (PMID:20100865) MGI PMID:20100865 NCBI chrNW_004624754:22,306,363...22,463,273
Ensembl chrNW_004624754:22,309,812...22,463,170
JBrowse link
G Hfe homeostatic iron regulator involved_in ISO (PMID:24904118) BHF-UCL PMID:24904118 NCBI chrNW_004624756:821,738...831,482
Ensembl chrNW_004624756:823,947...831,376
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:21628596) FlyBase PMID:21628596 NCBI chrNW_004624765:19,912,623...20,105,016
Ensembl chrNW_004624765:19,923,297...20,042,840
JBrowse link
G Pdcl3 phosducin like 3 acts_upstream_of_or_within ISO (PMID:23792958) MGI PMID:23792958 NCBI chrNW_004624749:5,410,501...5,419,625
Ensembl chrNW_004624749:5,410,476...5,422,533
JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (PMID:15195100) UniProt PMID:15195100 NCBI chrNW_004624781:464,858...498,146
Ensembl chrNW_004624781:464,658...497,775
JBrowse link
G Prmt6 protein arginine methyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:3,071,601...3,075,866
Ensembl chrNW_004624772:3,071,844...3,075,601
JBrowse link
G Psen1 presenilin 1 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743
JBrowse link
G Psen2 presenilin 2 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188
JBrowse link
G Qrich2 glutamine rich 2 involved_in ISO (PMID:30683861) UniProt PMID:30683861 NCBI chrNW_004624801:6,152,552...6,175,351
Ensembl chrNW_004624801:6,151,558...6,175,078
JBrowse link
G Rpl11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:8,258,656...8,262,842
Ensembl chrNW_004624764:8,258,709...8,266,016
JBrowse link
G Rpl23 ribosomal protein L23 involved_in ISO (PMID:15314173) CAFA PMID:15314173 NCBI chrNW_004624795:3,875,181...3,880,386
Ensembl chrNW_004624795:3,874,977...3,883,068
JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO (PMID:18560357) CAFA PMID:18560357 NCBI chrNW_004624742:4,973,229...4,983,361 JBrowse link
G Rps7 ribosomal protein S7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624846:5,185,236...5,190,357
Ensembl chrNW_004624846:5,185,236...5,190,260
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:19684112) MGI PMID:19684112 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341
JBrowse link
G Svip small VCP interacting protein involved_in ISO PMID:17000876 ParkinsonsUK-UCL PMID:17000876 RGD:10047192 NCBI chrNW_004624766:13,724,052...13,751,774
Ensembl chrNW_004624766:13,744,230...13,751,725
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:17237821) ParkinsonsUK-UCL PMID:17237821 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in ISO (PMID:19135427) ParkinsonsUK-UCL PMID:19135427 NCBI chrNW_004624770:10,741,247...10,769,837 JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004624860:3,519,106...3,532,690
Ensembl chrNW_004624860:3,519,113...3,532,687
JBrowse link
G Wnt1 Wnt family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16601693) Ensembl
MGI
PMID:16601693 GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606
JBrowse link
nuclear protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akirin2 akirin 2 acts_upstream_of_positive_effect
involved_in
ISO
IEA
(PMID:34711951) UniProt
Ensembl
PMID:34711951 GO_REF:0000107 NCBI chrNW_004624799:6,620,102...6,644,286
Ensembl chrNW_004624799:6,625,549...6,644,286
JBrowse link
G Cul3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727
JBrowse link
G Klhl15 kelch like family member 15 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624897:361,663...429,401
Ensembl chrNW_004624897:357,551...406,561
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:37478846), (PMID:37478862) UniProt PMID:37478846 PMID:37478862 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517
JBrowse link
oxidation-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lonp1 lon peptidase 1, mitochondrial involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624828:4,494,786...4,516,772
Ensembl chrNW_004624828:4,494,813...4,516,510
JBrowse link
positive regulation of anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624892:2,675,980...2,679,709
Ensembl chrNW_004624892:2,675,754...2,679,793
JBrowse link
G Cdc20b cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624759:4,112,012...4,174,838
Ensembl chrNW_004624759:4,109,203...4,176,824
JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:6,236,861...6,254,763
Ensembl chrNW_004624828:6,236,842...6,256,679
JBrowse link
positive regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chrNW_004624734:8,685,994...8,726,329 JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073
JBrowse link
G Bcap31 B cell receptor associated protein 31 involved_in ISO (PMID:18555783) ParkinsonsUK-UCL PMID:18555783 NCBI chrNW_004624946:398,901...420,767
Ensembl chrNW_004624946:399,227...419,642
JBrowse link
G Cav1 caveolin 1 involved_in ISO (PMID:24089527) ParkinsonsUK-UCL PMID:24089527 NCBI chrNW_004624827:2,844,855...2,878,367
Ensembl chrNW_004624827:2,844,115...2,879,179
JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085
JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:7,642,198...7,693,944
Ensembl chrNW_004624747:7,641,916...7,694,033
JBrowse link
G Rnft1 ring finger protein, transmembrane 1 involved_in ISO (PMID:27485036) UniProt PMID:27485036 NCBI chrNW_004624871:1,707,570...1,721,026
Ensembl chrNW_004624871:1,707,509...1,721,078
JBrowse link
G Rnft2 ring finger protein, transmembrane 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624747:16,346,149...16,459,312
Ensembl chrNW_004624747:16,389,005...16,459,805
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23246001) ParkinsonsUK-UCL PMID:23246001 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:26265139) UniProt PMID:26265139 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249
JBrowse link
G Tmem259 transmembrane protein 259 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,606,177...7,614,644
Ensembl chrNW_004624828:7,606,339...7,614,107
JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:19815549 RGD:8554391 NCBI chrNW_004624763:1,219,779...1,281,297
Ensembl chrNW_004624763:1,219,827...1,264,071
JBrowse link
G Tmx1 thioredoxin related transmembrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:17,713,812...17,730,521
Ensembl chrNW_004624731:17,718,868...17,730,586
JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251
JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126
JBrowse link
G Usp13 ubiquitin specific peptidase 13 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004624730:57,384,878...57,495,761
Ensembl chrNW_004624730:57,384,884...57,495,765
JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in ISO (PMID:19911006) MGI PMID:19911006 NCBI chrNW_004624755:22,818,653...22,841,717
Ensembl chrNW_004624755:22,824,143...22,841,850
JBrowse link
positive regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag2 BAG cochaperone 2 involved_in ISO (PMID:19228967) ARUK-UCL PMID:19228967 NCBI chrNW_004624753:18,983,449...18,986,078 JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:20080667) UniProt PMID:20080667 NCBI chrNW_004624760:13,472,500...13,658,070
Ensembl chrNW_004624760:13,472,672...13,657,930
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:23675531) UniProt PMID:23675531 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504
JBrowse link
G Ecscr endothelial cell surface expressed chemotaxis and apoptosis regulator acts_upstream_of_or_within ISO (PMID:19416853) MGI PMID:19416853 NCBI chrNW_004624743:32,248,768...32,272,352
Ensembl chrNW_004624743:32,246,966...32,256,617
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:23858059) ParkinsonsUK-UCL PMID:23858059 NCBI chrNW_004624858:3,778,842...3,974,351
Ensembl chrNW_004624858:3,775,795...3,873,336
JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:24709664) UniProt PMID:24709664 NCBI chrNW_004624883:645,524...681,705
Ensembl chrNW_004624883:645,449...682,292
JBrowse link
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 involved_in ISO (PMID:22180649) BHF-UCL PMID:22180649 NCBI chrNW_004624745:22,552,809...22,553,321
Ensembl chrNW_004624745:22,525,037...22,556,000
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:16300740) UniProt PMID:16300740 NCBI chrNW_004624782:13,042,938...13,044,298
Ensembl chrNW_004624782:13,042,939...13,044,267
JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 ISO RGD PMID:12359729 RGD:7245486 NCBI chrNW_004624828:6,617,342...6,620,466
Ensembl chrNW_004624828:6,617,727...6,620,402
JBrowse link
G Osbpl7 oxysterol binding protein like 7 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chrNW_004624795:4,468,767...4,479,654
Ensembl chrNW_004624795:4,469,551...4,479,798
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:23858059) ParkinsonsUK-UCL PMID:23858059 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747
JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624739:26,001,871...26,015,633
Ensembl chrNW_004624739:26,001,871...26,016,040
JBrowse link
G Rnf40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chrNW_004624782:13,884,737...13,896,496
Ensembl chrNW_004624782:13,884,830...13,896,500
JBrowse link
G Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 involved_in ISO (PMID:21603654) UniProt PMID:21603654 NCBI chrNW_004624837:7,139,006...7,205,077
Ensembl chrNW_004624837:7,138,419...7,190,194
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:29518356) ARUK-UCL PMID:29518356 NCBI chrNW_004624754:17,643,397...17,649,255
Ensembl chrNW_004624754:17,643,363...17,648,231
JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within
involved_in
ISO (PMID:15937334)
(PMID:23512198)
MGI
UniProt
PMID:15937334 PMID:23512198 NCBI chrNW_004624734:507,880...525,295
Ensembl chrNW_004624734:509,368...525,295
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23152632) MGI PMID:23152632 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290
JBrowse link
G Aurka aurora kinase A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17060449) Ensembl
MGI
PMID:17060449 GO_REF:0000107 NCBI chrNW_004624790:143,818...162,065
Ensembl chrNW_004624790:147,149...161,344
JBrowse link
G Axin1 axin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16601693) Ensembl
TreeGrafter
MGI
PMID:16601693 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230
JBrowse link
G Axin2 axin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624870:2,803,743...2,832,489
Ensembl chrNW_004624870:2,800,873...2,832,626
JBrowse link
G Bag2 BAG cochaperone 2 NOT|involved_in ISO (PMID:19228967) ARUK-UCL PMID:19228967 NCBI chrNW_004624753:18,983,449...18,986,078 JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within ISO (PMID:22302990) MGI PMID:22302990 NCBI chrNW_004624777:2,105,122...2,151,399
Ensembl chrNW_004624777:2,104,765...2,151,402
JBrowse link
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in ISO (PMID:25974097) UniProt PMID:25974097 NCBI chrNW_004624746:716,848...773,169
Ensembl chrNW_004624746:716,836...773,169
JBrowse link
G Chfr checkpoint with forkhead and ring finger domains acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chrNW_004624747:28,187,356...28,222,041
Ensembl chrNW_004624747:28,188,419...28,221,525
JBrowse link
G Clu clusterin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:22,431,331...22,444,185
Ensembl chrNW_004624758:22,426,918...22,444,357
JBrowse link
G Cop1 COP1 E3 ubiquitin ligase involved_in ISO (PMID:19805145) UniProt PMID:19805145 NCBI chrNW_004624771:5,922,086...6,132,537
Ensembl chrNW_004624771:5,922,067...6,133,597
JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:8,815,021...8,862,657
Ensembl chrNW_004624774:8,815,023...8,862,878
JBrowse link
G Csnk1d casein kinase 1 delta involved_in ISO (PMID:19414593) UniProt PMID:19414593 NCBI chrNW_004624801:11,031,102...11,074,100
Ensembl chrNW_004624801:11,032,021...11,058,551
JBrowse link
G Dab2 DAB adaptor protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:15,459,436...15,520,225
Ensembl chrNW_004624759:15,459,288...15,520,924
JBrowse link
G Dda1 DET1 and DDB1 associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624908:631,429...637,158
Ensembl chrNW_004624908:631,432...637,104
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:23675531) ParkinsonsUK-UCL PMID:23675531 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504
JBrowse link
G Det1 DET1 partner of COP1 E3 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624768:15,869,949...15,919,368
Ensembl chrNW_004624768:15,870,035...15,884,201
JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,730,553...5,737,668
Ensembl chrNW_004624823:5,730,386...5,738,459
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725
JBrowse link
G Fbxo22 F-box protein 22 acts_upstream_of_or_within ISO (PMID:19319192) MGI PMID:19319192 NCBI chrNW_004624894:2,158,065...2,177,945
Ensembl chrNW_004624894:2,158,065...2,178,431
JBrowse link
G Fbxw8 F-box and WD repeat domain containing 8 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004624747:16,226,025...16,343,839
Ensembl chrNW_004624747:16,233,312...16,343,824
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in ISO (PMID:25684205) UniProt PMID:25684205 NCBI chrNW_004624786:9,857,370...9,859,675
Ensembl chrNW_004624786:9,857,370...9,860,063
JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ParkinsonsUK-UCL PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327
JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17189825) Ensembl
MGI
PMID:17189825 GO_REF:0000107 NCBI chrNW_004624850:749,046...793,654
Ensembl chrNW_004624850:749,050...793,959
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (PMID:25897075) ARUK-UCL PMID:25897075 NCBI chrNW_004624907:511,919...522,106
Ensembl chrNW_004624907:511,889...522,168
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22660580) Ensembl
TreeGrafter
MGI
PMID:22660580 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624731:28,178,647...28,368,784
Ensembl chrNW_004624731:28,178,628...28,366,420
JBrowse link
G Hamp hepcidin antimicrobial peptide involved_in ISO (PMID:37277838) UniProt PMID:37277838 NCBI chrNW_004624794:8,257,760...8,259,243
Ensembl chrNW_004624794:8,257,760...8,259,264
JBrowse link
G Hspbp1 HSPA (Hsp70) binding protein 1 involved_in ISO (PMID:16831871) BHF-UCL PMID:16831871 NCBI chrNW_004624832:1,997,748...2,009,683
Ensembl chrNW_004624832:1,998,005...2,009,683
JBrowse link
G Il33 interleukin 33 acts_upstream_of_or_within ISO (PMID:22660580) MGI PMID:22660580 NCBI chrNW_004624736:10,733,944...10,786,188
Ensembl chrNW_004624736:10,764,486...10,784,864
JBrowse link
G Klhl40 kelch like family member 40 involved_in ISO (PMID:25940086) UniProt PMID:25940086 NCBI chrNW_004624730:77,004,787...77,012,643
Ensembl chrNW_004624730:77,007,063...77,011,413
JBrowse link
G LOC101719398 serotransferrin involved_in ISO (PMID:37277838) UniProt PMID:37277838 NCBI chrNW_004624730:10,078,165...10,109,349 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:20457918) BHF-UCL PMID:20457918 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004624928:1,442,216...1,494,275
Ensembl chrNW_004624928:1,439,146...1,494,266
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004624733:42,998,948...43,048,392
Ensembl chrNW_004624733:42,999,339...43,048,285
JBrowse link
G Nkd2 NKD inhibitor of WNT signaling pathway 2 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chrNW_004624751:495,561...507,756 JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:25818168), (PMID:27323397)
(PMID:21804542)
UniProt PMID:21804542 PMID:25818168 PMID:27323397 NCBI chrNW_004624832:6,144,260...6,154,172
Ensembl chrNW_004624832:6,145,749...6,154,411
JBrowse link
G Nub1 negative regulator of ubiquitin like proteins 1 involved_in ISO (PMID:16707496) UniProt PMID:16707496 NCBI chrNW_004624800:5,314,203...5,345,301
Ensembl chrNW_004624800:5,315,381...5,345,801
JBrowse link
G Pabir1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in ISO (PMID:27588481) UniProt PMID:27588481 NCBI chrNW_004624736:4,333,707...4,341,205
Ensembl chrNW_004624736:4,340,195...4,341,058
JBrowse link
G Pias1 protein inhibitor of activated STAT 1 involved_in ISO (PMID:22406621) UniProt PMID:22406621 NCBI chrNW_004624781:4,893,308...5,046,928
Ensembl chrNW_004624781:4,893,308...5,046,582
JBrowse link
G Plk1 polo like kinase 1 involved_in ISO (PMID:19473992) UniProt PMID:19473992 NCBI chrNW_004624782:8,811,593...8,823,060
Ensembl chrNW_004624782:8,811,616...8,826,749
JBrowse link
G Plk2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chrNW_004624759:811,320...817,401
Ensembl chrNW_004624759:811,316...817,474
JBrowse link
G Plk3 polo like kinase 3 involved_in ISO (PMID:20889502) UniProt PMID:20889502 NCBI chrNW_004624906:678,517...693,644
Ensembl chrNW_004624906:688,707...693,326
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:17030191) BHF-UCL PMID:17030191 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994
JBrowse link
G Psen1 presenilin 1 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743
JBrowse link
G Psen2 presenilin 2 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188
JBrowse link
G Psmd10 proteasome 26S subunit, non-ATPase 10 involved_in ISO (PMID:16023600) UniProt PMID:16023600 NCBI chrNW_004624803:8,407,462...8,420,316 JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISO (PMID:19785988) UniProt PMID:19785988 NCBI chrNW_004624958:181,325...185,620
Ensembl chrNW_004624958:181,273...185,620
JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:26296656) CAFA PMID:26296656 NCBI chrNW_004624901:515,761...522,845
Ensembl chrNW_004624901:516,855...523,337
JBrowse link
G Rbx1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:7,547,702...7,560,605
Ensembl chrNW_004624752:7,546,959...7,560,668
JBrowse link
G Rchy1 ring finger and CHY zinc finger domain containing 1 involved_in ISO (PMID:19483087) UniProt PMID:19483087 NCBI chrNW_004624730:322,448...342,454 JBrowse link
G Rnf180 ring finger protein 180 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:18363970), (PMID:23926250) MGI
TreeGrafter
PMID:18363970 PMID:23926250 GO_REF:0000118 NCBI chrNW_004624815:5,433,057...5,621,833
Ensembl chrNW_004624815:5,432,991...5,622,914
JBrowse link
G Sh3rf2 SH3 domain containing ring finger 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624774:5,319,329...5,554,823
Ensembl chrNW_004624774:5,327,570...5,555,645
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:20203304) AgBase PMID:20203304 NCBI chrNW_004624754:2,304,476...2,332,705
Ensembl chrNW_004624754:2,304,634...2,330,946
JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:24681946) UniProt PMID:24681946 NCBI chrNW_004624794:12,239,363...12,259,561
Ensembl chrNW_004624794:12,235,263...12,259,276
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27457971) CACAO PMID:27457971 NCBI chrNW_004624828:5,441,973...5,449,549
Ensembl chrNW_004624828:5,442,057...5,451,520
JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004624738:28,150,004...28,217,850
Ensembl chrNW_004624738:28,150,664...28,216,389
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:11146632) HGNC-UCL PMID:11146632 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249
JBrowse link
G Sumo1 small ubiquitin like modifier 1 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004624765:14,205,071...14,229,864
Ensembl chrNW_004624765:14,205,051...14,229,864
JBrowse link
G Sumo2 small ubiquitin like modifier 2 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004624801:4,998,271...5,009,492 JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:15053879) BHF-UCL PMID:15053879 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Trib1 tribbles pseudokinase 1 involved_in ISO (PMID:20410507) BHF-UCL PMID:20410507 NCBI chrNW_004624735:29,880,732...29,888,117
Ensembl chrNW_004624735:29,879,310...29,888,305
JBrowse link
G Trib2 tribbles pseudokinase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624865:3,477,831...3,503,783
Ensembl chrNW_004624865:3,475,141...3,503,783
JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004624735:7,431,955...7,464,698
Ensembl chrNW_004624735:7,432,078...7,464,672
JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in ISO (PMID:19098288) UniProt PMID:19098288 NCBI chrNW_004624860:3,519,106...3,532,690
Ensembl chrNW_004624860:3,519,113...3,532,687
JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501
JBrowse link
G Zer1 zyg-11 related cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chrNW_004624760:6,247,016...6,270,621
Ensembl chrNW_004624760:6,247,052...6,270,621
JBrowse link
G Zfand2a zinc finger AN1-type containing 2A acts_upstream_of_or_within ISO (PMID:16973439) MGI PMID:16973439 NCBI chrNW_004624740:26,730,499...26,741,426
Ensembl chrNW_004624740:26,727,557...26,741,411
JBrowse link
G Zyg11b zyg-11 family member B, cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chrNW_004624859:359,309...453,395
Ensembl chrNW_004624859:364,268...454,038
JBrowse link
positive regulation of proteolysis involved in protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:24005319) ParkinsonsUK-UCL PMID:24005319 NCBI chrNW_004624764:12,068,518...12,070,542
Ensembl chrNW_004624764:12,068,638...12,072,190
JBrowse link
G Ctsc cathepsin C involved_in ISO PMID:18307834 ParkinsonsUK-UCL PMID:18307834 RGD:8661625 NCBI chrNW_004624845:1,783,807...1,816,471
Ensembl chrNW_004624845:1,783,918...1,815,981
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504
JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:21700325) ARUK-UCL PMID:21700325 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327
JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (PMID:22949502) ARUK-UCL PMID:22949502 NCBI chrNW_004624764:14,208,144...14,277,208
Ensembl chrNW_004624764:14,207,094...14,228,135
JBrowse link
G Rgn regucalcin ISO RGD PMID:1513338 RGD:9590188 NCBI chrNW_004624887:3,881,624...3,900,144
Ensembl chrNW_004624887:3,883,213...3,899,277
JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004624810:8,804,330...8,832,460
Ensembl chrNW_004624810:8,805,964...8,832,358
JBrowse link
positive regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcap31 B cell receptor associated protein 31 involved_in ISO (PMID:18555783) ParkinsonsUK-UCL PMID:18555783 NCBI chrNW_004624946:398,901...420,767
Ensembl chrNW_004624946:399,227...419,642
JBrowse link
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in ISO (PMID:24200403) ParkinsonsUK-UCL PMID:24200403 NCBI chrNW_004624773:15,846,347...15,878,312
Ensembl chrNW_004624773:15,846,553...15,878,803
JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:24200403) ParkinsonsUK-UCL PMID:24200403 NCBI chrNW_004624842:4,259,551...4,288,181
Ensembl chrNW_004624842:4,259,605...4,292,518
JBrowse link
positive regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agbl4 AGBL carboxypeptidase 4 acts_upstream_of_or_within ISO (PMID:29593216) MGI PMID:29593216 NCBI chrNW_004624859:3,061,185...4,420,220
Ensembl chrNW_004624859:3,061,342...4,418,967
JBrowse link
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within ISO (PMID:29593216) MGI PMID:29593216 NCBI chrNW_004624809:9,119,412...9,321,226
Ensembl chrNW_004624809:9,119,951...9,339,604
JBrowse link
G Atxn3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chrNW_004624734:8,685,994...8,726,329 JBrowse link
G Axin1 axin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16601693) Ensembl
MGI
PMID:16601693 GO_REF:0000107 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230
JBrowse link
G Bcap31 B cell receptor associated protein 31 involved_in ISO (PMID:18555783) ParkinsonsUK-UCL PMID:18555783 NCBI chrNW_004624946:398,901...420,767
Ensembl chrNW_004624946:399,227...419,642
JBrowse link
G Ccdc22 coiled-coil domain containing 22 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624893:971,688...1,008,460
Ensembl chrNW_004624893:971,645...998,886
JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 NOT|involved_in ISO (PMID:16173922) UniProt PMID:16173922 NCBI chrNW_004624795:4,594,131...4,602,435
Ensembl chrNW_004624795:4,594,207...4,602,583
JBrowse link
G Clu clusterin involved_in ISO (PMID:20068069) UniProt PMID:20068069 NCBI chrNW_004624758:22,431,331...22,444,185
Ensembl chrNW_004624758:22,426,918...22,444,357
JBrowse link
G Disc1 DISC1 scaffold protein acts_upstream_of_or_within ISO (PMID:20880836) MGI PMID:20880836 NCBI chrNW_004624775:17,820,590...18,165,640
Ensembl chrNW_004624775:17,831,272...18,165,668
JBrowse link
G Fbxo22 F-box protein 22 acts_upstream_of_or_within ISO (PMID:19319192) MGI PMID:19319192 NCBI chrNW_004624894:2,158,065...2,177,945
Ensembl chrNW_004624894:2,158,065...2,178,431
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:27238018)
(PMID:20208556)
UniProt
BHF-UCL
PMID:20208556 PMID:27238018 NCBI chrNW_004624858:3,778,842...3,974,351
Ensembl chrNW_004624858:3,775,795...3,873,336
JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085
JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 involved_in ISO (PMID:29691401) UniProt PMID:29691401 NCBI chrNW_004624753:4,304,787...4,415,684
Ensembl chrNW_004624753:4,326,748...4,414,957
JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (PMID:24638062)
(PMID:18619870)
ARUK-UCL PMID:18619870 PMID:24638062 NCBI chrNW_004624764:14,208,144...14,277,208
Ensembl chrNW_004624764:14,207,094...14,228,135
JBrowse link
G Magef1 MAGE family member F1 involved_in ISO (PMID:29225034) UniProt PMID:29225034 NCBI chrNW_004624730:71,862,531...71,865,328 JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (PMID:21241890) BHF-UCL PMID:21241890 NCBI chrNW_004624791:13,975,235...14,056,900 JBrowse link
G Ptk2 protein tyrosine kinase 2 involved_in ISO (PMID:18206965) UniProt PMID:18206965 NCBI chrNW_004624735:15,356,911...15,713,219
Ensembl chrNW_004624735:15,461,178...15,714,071
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISO (PMID:19880522) UniProt PMID:19880522 NCBI chrNW_004624758:22,065,448...22,182,604
Ensembl chrNW_004624758:22,124,836...22,182,605
JBrowse link
G Rnf139 ring finger protein 139 involved_in ISO (PMID:25239945) UniProt PMID:25239945 NCBI chrNW_004624735:30,715,373...30,726,591
Ensembl chrNW_004624735:30,715,384...30,726,862
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23246001) ParkinsonsUK-UCL PMID:23246001 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528
JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:21454619) CACAO PMID:21454619 NCBI chrNW_004624740:32,480,138...32,615,436
Ensembl chrNW_004624740:32,483,092...32,615,260
JBrowse link
G Sumo3 small ubiquitin like modifier 3 acts_upstream_of_or_within ISO (PMID:18644859) MGI PMID:18644859 NCBI chrNW_004624745:30,384,762...30,393,454
Ensembl chrNW_004624745:30,385,940...30,393,326
JBrowse link
G Tgfb1i1 transforming growth factor beta 1 induced transcript 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:14,471,427...14,476,792
Ensembl chrNW_004624782:14,471,415...14,476,914
JBrowse link
G Traf7 TNF receptor associated factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624913:79,423...100,301
Ensembl chrNW_004624913:79,423...100,279
JBrowse link
G Trim67 tripartite motif containing 67 acts_upstream_of_or_within ISO (PMID:22337885) MGI PMID:22337885 NCBI chrNW_004624775:18,460,463...18,499,349
Ensembl chrNW_004624775:18,465,786...18,498,937
JBrowse link
G Vcp valosin containing protein ISO RGD PMID:16103111 RGD:1599730 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501
JBrowse link
prenylated protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcyox1 prenylcysteine oxidase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624762:3,164,320...3,175,760
Ensembl chrNW_004624762:3,167,661...3,175,679
JBrowse link
G Pcyox1l prenylcysteine oxidase 1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624774:8,716,828...8,728,012
Ensembl chrNW_004624774:8,716,770...8,728,215
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (PMID:11399759) MGI PMID:11399759 NCBI chrNW_004624764:22,723,643...22,777,517
Ensembl chrNW_004624764:22,723,291...22,778,761
JBrowse link
proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO (PMID:25413698) MGI PMID:25413698 NCBI chrNW_004624746:378,123...576,809
Ensembl chrNW_004624746:461,933...577,050
JBrowse link
G Ate1 arginyltransferase 1 acts_upstream_of_or_within ISO (PMID:25970626) MGI PMID:25970626 NCBI chrNW_004624737:24,744,557...24,910,310
Ensembl chrNW_004624737:24,744,574...24,907,680
JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:26565908) UniProt PMID:26565908 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073
JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 acts_upstream_of_or_within ISO (PMID:25732823) MGI PMID:25732823 NCBI chrNW_004624760:15,902,890...16,071,513
Ensembl chrNW_004624760:15,902,858...16,075,104
JBrowse link
G Cul4b cullin 4B acts_upstream_of_or_within ISO (PMID:25970626) MGI PMID:25970626 NCBI chrNW_004624931:431,835...568,609 JBrowse link
G Ddb1 damage specific DNA binding protein 1 acts_upstream_of_or_within ISO (PMID:25970626) MGI PMID:25970626 NCBI chrNW_004624926:871,003...893,902
Ensembl chrNW_004624926:871,000...897,777
JBrowse link
G Ddi1 DNA damage inducible 1 homolog 1 involved_in ISO (PMID:29290612) UniProt PMID:29290612 NCBI chrNW_004624918:1,177,679...1,179,208
Ensembl chrNW_004624918:1,177,614...1,179,393
JBrowse link
G Derl1 derlin 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624735:31,832,711...31,857,687
Ensembl chrNW_004624735:31,832,701...31,857,687
JBrowse link
G Derl2 derlin 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288
JBrowse link
G Derl3 derlin 3 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624747:10,357,560...10,359,779
Ensembl chrNW_004624747:10,357,627...10,359,779
JBrowse link
G Dtx4 deltex E3 ubiquitin ligase 4 involved_in ISO (PMID:35793002) UniProt PMID:35793002 NCBI chrNW_004624864:1,475,383...1,502,047
Ensembl chrNW_004624864:1,478,059...1,498,066
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:35733270) MGI
Ensembl
PMID:35733270 GO_REF:0000107 NCBI chrNW_004624730:38,003,437...38,144,312
Ensembl chrNW_004624730:38,003,902...38,144,277
JBrowse link
G LOC101701770 protein SCO1 homolog, mitochondrial acts_upstream_of ISO (PMID:25683716) MGI PMID:25683716 NCBI chrNW_004624786:13,038,384...13,053,250
Ensembl chrNW_004624786:13,036,426...13,053,210
JBrowse link
G Marchf6 membrane associated ring-CH-type finger 6 involved_in ISO (PMID:15673284) ParkinsonsUK-UCL PMID:15673284 NCBI chrNW_004624751:7,715,065...7,781,320
Ensembl chrNW_004624751:7,715,007...7,780,460
JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:3,102,424...3,109,497
Ensembl chrNW_004624795:3,102,439...3,109,497
JBrowse link
G Nub1 negative regulator of ubiquitin like proteins 1 acts_upstream_of_or_within ISO (PMID:26797281) MGI PMID:26797281 NCBI chrNW_004624800:5,314,203...5,345,301
Ensembl chrNW_004624800:5,315,381...5,345,801
JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 involved_in ISO (PMID:15901672) UniProt PMID:15901672 NCBI chrNW_004624792:5,330,289...5,338,067 JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:14627652) MGI PMID:14627652 NCBI chrNW_004624877:3,293,980...3,328,337
Ensembl chrNW_004624877:3,292,244...3,328,660
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:19725078) BHF-UCL PMID:19725078 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747
JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO (PMID:17349974) UniProt PMID:17349974 NCBI chrNW_004624926:268,965...274,634
Ensembl chrNW_004624926:266,159...274,529
JBrowse link
G Psma8 proteasome 20S subunit alpha 8 involved_in ISO (PMID:31358751) UniProt PMID:31358751 NCBI chrNW_004624770:6,183,774...6,235,885
Ensembl chrNW_004624770:6,185,767...6,236,505
JBrowse link
G Psmb2 proteasome 20S subunit beta 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624764:18,653,691...18,688,037
Ensembl chrNW_004624764:18,650,839...18,688,035
JBrowse link
G Rnf170 ring finger protein 170 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31076723) MGI
Ensembl
PMID:31076723 GO_REF:0000107 NCBI chrNW_004624780:67,160...127,620
Ensembl chrNW_004624780:66,049...126,383
JBrowse link
G Rnf41 ring finger protein 41 involved_in ISO (PMID:18541373) ParkinsonsUK-UCL PMID:18541373 NCBI chrNW_004624802:11,781,748...11,811,412
Ensembl chrNW_004624802:11,781,725...11,810,402
JBrowse link
G Socs6 suppressor of cytokine signaling 6 acts_upstream_of_or_within ISO (PMID:20007709) MGI PMID:20007709 NCBI chrNW_004624806:10,921,204...10,949,108 JBrowse link
G Trim21 tripartite motif containing 21 involved_in ISO (PMID:36359729) UniProt PMID:36359729 NCBI chrNW_004624817:5,643,788...5,651,514
Ensembl chrNW_004624817:5,639,779...5,653,361
JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624747:110,090...132,145
Ensembl chrNW_004624747:110,090...132,097
JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004624731:5,350,912...5,359,286 JBrowse link
proteasomal ubiquitin-independent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enc1 ectodermal-neural cortex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624924:281,251...294,248
Ensembl chrNW_004624924:281,327...294,248
JBrowse link
G Midn midnolin involved_in ISO (PMID:37616343) UniProt PMID:37616343 NCBI chrNW_004624828:7,417,157...7,427,331
Ensembl chrNW_004624828:7,415,288...7,425,608
JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:19424503) UniProt PMID:19424503 NCBI chrNW_004624787:14,355,330...14,381,353
Ensembl chrNW_004624787:14,355,791...14,381,251
JBrowse link
G Psme4 proteasome activator subunit 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624833:8,035,768...8,137,655
Ensembl chrNW_004624833:8,035,768...8,137,635
JBrowse link
proteasome-mediated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agap3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 acts_upstream_of_or_within ISO (PMID:16461359) MGI PMID:16461359 NCBI chrNW_004624800:5,486,728...5,535,691
Ensembl chrNW_004624800:5,487,200...5,535,707
JBrowse link
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of ISO (PMID:15937334) MGI PMID:15937334 NCBI chrNW_004624734:507,880...525,295
Ensembl chrNW_004624734:509,368...525,295
JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:33854232), (PMID:33854235), (PMID:33854239) UniProt PMID:33854232 PMID:33854235 PMID:33854239 NCBI chrNW_004624767:1,967,002...2,160,102
Ensembl chrNW_004624767:1,966,898...2,160,465
JBrowse link
G Anapc11 anaphase promoting complex subunit 11 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624801:10,738,356...10,742,334
Ensembl chrNW_004624801:10,738,224...10,742,220
JBrowse link
G Ankrd9 ankyrin repeat domain 9 involved_in ISO (PMID:30293565) UniProt PMID:30293565 NCBI chrNW_004624734:2,011,038...2,013,055
Ensembl chrNW_004624734:2,011,085...2,012,998
JBrowse link
G Appbp2 amyloid beta precursor protein binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624871:3,157,148...3,217,955
Ensembl chrNW_004624871:3,156,388...3,216,748
JBrowse link
G Arih2 ariadne RBR E3 ubiquitin protein ligase 2 involved_in ISO (PMID:31253590), (PMID:33268465) UniProt PMID:31253590 PMID:33268465 NCBI chrNW_004624730:2,953,649...3,023,716
Ensembl chrNW_004624730:2,953,669...3,023,042
JBrowse link
G Armc8 armadillo repeat containing 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:14,710,878...14,801,654
Ensembl chrNW_004624730:14,710,919...14,799,806
JBrowse link
G Arrb1 arrestin beta 1 involved_in ISO (PMID:15878855) UniProt PMID:15878855 NCBI chrNW_004624817:1,750,448...1,828,399
Ensembl chrNW_004624817:1,750,156...1,823,309
JBrowse link
G Arrb2 arrestin beta 2 involved_in ISO (PMID:15878855) UniProt PMID:15878855 NCBI chrNW_004624786:8,568,102...8,576,445
Ensembl chrNW_004624786:8,568,198...8,577,914
JBrowse link
G Asb11 ankyrin repeat and SOCS box containing 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624829:104,065...122,955
Ensembl chrNW_004624829:103,969...123,033
JBrowse link
G Asb2 ankyrin repeat and SOCS box containing 2 involved_in ISO (PMID:21119685)
(PMID:23632887), (PMID:29374072)
UniProt PMID:21119685 PMID:23632887 PMID:29374072 NCBI chrNW_004624734:10,317,932...10,352,300
Ensembl chrNW_004624734:10,316,299...10,352,515
JBrowse link
G Asb9 ankyrin repeat and SOCS box containing 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624829:63,524...86,042
Ensembl chrNW_004624829:63,605...78,016
JBrowse link
G Atxn3 ataxin 3 involved_in ISO (PMID:21855799) UniProt PMID:21855799 NCBI chrNW_004624734:8,685,994...8,726,329 JBrowse link
G Aurka aurora kinase A involved_in
acts_upstream_of
IEA
ISO
(PMID:17060449) Ensembl
MGI
PMID:17060449 GO_REF:0000107 NCBI chrNW_004624790:143,818...162,065
Ensembl chrNW_004624790:147,149...161,344
JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:26692333) UniProt PMID:26692333 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073
JBrowse link
G Bfar bifunctional apoptosis regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:3,890,818...3,916,920
Ensembl chrNW_004624782:3,887,129...3,916,858
JBrowse link
G Birc2 baculoviral IAP repeat containing 2 involved_in ISO (PMID:11907583) UniProt PMID:11907583 NCBI chrNW_004624878:476,460...514,637 JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 involved_in ISO (PMID:23395176) UniProt PMID:23395176 NCBI chrNW_004624766:5,295,120...5,391,645
Ensembl chrNW_004624766:5,317,635...5,391,645
JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase involved_in ISO (PMID:15917222) UniProt PMID:15917222 NCBI chrNW_004624831:868,417...1,065,591
Ensembl chrNW_004624831:868,563...1,060,248
JBrowse link
G Cd2ap CD2 associated protein ISO RGD PMID:15001553 RGD:1302417 NCBI chrNW_004624754:13,420,594...13,511,672
Ensembl chrNW_004624754:13,420,603...13,511,523
JBrowse link
G Cdc34 cell division cycle 34, ubiqiutin conjugating enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:7,935,544...7,942,627
Ensembl chrNW_004624828:7,935,550...7,942,957
JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723
JBrowse link
G Clock clock circadian regulator involved_in ISO (PMID:23395176) UniProt PMID:23395176 NCBI chrNW_004624761:13,915,277...14,038,596
Ensembl chrNW_004624761:13,916,653...14,036,164
JBrowse link
G Cop1 COP1 E3 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624771:5,922,086...6,132,537
Ensembl chrNW_004624771:5,922,067...6,133,597
JBrowse link
G Crbn cereblon involved_in ISO (PMID:20223979) UniProt PMID:20223979 NCBI chrNW_004624773:13,383,697...13,406,892
Ensembl chrNW_004624773:13,384,383...13,407,191
JBrowse link
G Ctnnb1 catenin beta 1 involved_in ISO (PMID:29374064) UniProt PMID:29374064 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Cul1 cullin 1 involved_in ISO (PMID:10644755), (PMID:15145941), (PMID:34480022) UniProt PMID:10644755 PMID:15145941 PMID:34480022 NCBI chrNW_004624800:6,877,986...6,978,587 JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20811152) MGI
Ensembl
PMID:20811152 GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727
JBrowse link
G Cul4a cullin 4A involved_in
acts_upstream_of_or_within
ISO (PMID:14739464)
(PMID:16467204)
UniProt
MGI
PMID:14739464 PMID:16467204 NCBI chrNW_004624793:686,720...722,516
Ensembl chrNW_004624793:688,135...722,490
JBrowse link
G Cul5 cullin 5 involved_in ISO (PMID:21980433), (PMID:22190037), (PMID:27910872), (PMID:31387940), (PMID:33268465), (PMID:34518685), (PMID:38418882), (PMID:38574733)
(PMID:17974915), (PMID:24210661)
UniProt PMID:17974915 PMID:21980433 PMID:22190037 PMID:24210661 PMID:27910872 More... NCBI chrNW_004624784:2,736,462...2,822,854
Ensembl chrNW_004624784:2,736,490...2,820,564
JBrowse link
G Dcaf1 DDB1 and CUL4 associated factor 1 involved_in ISO (PMID:28242748), (PMID:34259627) UniProt PMID:28242748 PMID:34259627 NCBI chrNW_004624730:5,176,828...5,245,548
Ensembl chrNW_004624730:5,176,828...5,240,680
JBrowse link
G Dcaf11 DDB1 and CUL4 associated factor 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,407,597...8,415,301
Ensembl chrNW_004624820:8,407,596...8,415,295
JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in ISO (PMID:30111536), (PMID:31492966) UniProt PMID:30111536 PMID:31492966 NCBI chrNW_004624763:19,955,368...19,980,480
Ensembl chrNW_004624763:19,955,408...19,980,620
JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624926:871,003...893,902
Ensembl chrNW_004624926:871,000...897,777
JBrowse link
G Ddit3 DNA damage inducible transcript 3 involved_in ISO (PMID:17872950) UniProt PMID:17872950 NCBI chrNW_004624802:10,437,998...10,443,278 JBrowse link
G Derl1 derlin 1 involved_in ISO (PMID:26692333) UniProt PMID:26692333 NCBI chrNW_004624735:31,832,711...31,857,687
Ensembl chrNW_004624735:31,832,701...31,857,687
JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:21625540) UniProt PMID:21625540 NCBI chrNW_004624823:5,730,553...5,737,668
Ensembl chrNW_004624823:5,730,386...5,738,459
JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624771:17,612,264...17,660,772
Ensembl chrNW_004624771:17,612,284...17,662,405
JBrowse link
G Dtx4 deltex E3 ubiquitin ligase 4 involved_in ISO (PMID:27692986) UniProt PMID:27692986 NCBI chrNW_004624864:1,475,383...1,502,047
Ensembl chrNW_004624864:1,478,059...1,498,066
JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (PMID:16431915) MGI PMID:16431915 NCBI chrNW_004624814:8,839,016...8,924,161
Ensembl chrNW_004624814:8,838,997...8,922,936
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:24914213) MGI PMID:24914213 NCBI chrNW_004624753:8,715,898...8,805,728
Ensembl chrNW_004624753:8,715,898...8,804,194
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624815:9,054,576...9,135,136
Ensembl chrNW_004624815:9,054,651...9,134,286
JBrowse link
G Faf2 Fas associated factor family member 2 involved_in ISO (PMID:26692333) UniProt PMID:26692333 NCBI chrNW_004624733:13,608,993...13,674,200
Ensembl chrNW_004624733:13,608,360...13,674,175
JBrowse link
G Fbxl17 F-box and leucine rich repeat protein 17 involved_in ISO (PMID:30190310) UniProt PMID:30190310 NCBI chrNW_004624743:25,787,012...26,278,813
Ensembl chrNW_004624743:25,789,733...26,278,728
JBrowse link
G Fbxl19 F-box and leucine rich repeat protein 19 acts_upstream_of_or_within
involved_in
ISO (PMID:22660580)
(PMID:23512198)
MGI
UniProt
PMID:22660580 PMID:23512198 NCBI chrNW_004624782:14,000,230...14,026,749 JBrowse link
G Fbxl22 F-box and leucine rich repeat protein 22 acts_upstream_of_or_within ISO (PMID:22972877) MGI PMID:22972877 NCBI chrNW_004624781:8,910,778...8,915,393
Ensembl chrNW_004624781:8,910,857...8,915,069
JBrowse link
G Fbxl3 F-box and leucine rich repeat protein 3 involved_in ISO (PMID:17462724) UniProt PMID:17462724 NCBI chrNW_004624751:23,374,622...23,391,535
Ensembl chrNW_004624751:23,374,702...23,398,727
JBrowse link
G Fbxo11 F-box protein 11 involved_in ISO (PMID:29059170)
(PMID:25827072)
UniProt PMID:25827072 PMID:29059170 NCBI chrNW_004624738:29,108,759...29,190,725
Ensembl chrNW_004624738:29,108,809...29,191,368
JBrowse link
G Fbxo22 F-box protein 22 acts_upstream_of ISO (PMID:19319192) MGI PMID:19319192 NCBI chrNW_004624894:2,158,065...2,177,945
Ensembl chrNW_004624894:2,158,065...2,178,431
JBrowse link
G Fbxo45 F-box protein 45 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:61,667,177...61,684,162 JBrowse link
G Fbxo7 F-box protein 7 involved_in ISO (PMID:36646384) UniProt PMID:36646384 NCBI chrNW_004624750:1,977,666...1,997,408
Ensembl chrNW_004624750:1,977,761...1,997,231
JBrowse link
G Fbxo9 F-box protein 9 involved_in ISO (PMID:34480022) UniProt PMID:34480022 NCBI chrNW_004624850:287,585...335,939
Ensembl chrNW_004624850:287,586...336,827
JBrowse link
G Fbxw11 F-box and WD repeat domain containing 11 involved_in ISO (PMID:10644755), (PMID:20347421) UniProt PMID:10644755 PMID:20347421 NCBI chrNW_004624733:17,985,546...18,121,398 JBrowse link
G Fbxw5 F-box and WD repeat domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:939,896...943,636
Ensembl chrNW_004624760:940,256...943,644
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624858:3,778,842...3,974,351
Ensembl chrNW_004624858:3,775,795...3,873,336
JBrowse link
G Fem1b fem-1 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:4,814,030...4,827,274
Ensembl chrNW_004624781:4,817,090...4,827,837
JBrowse link
G Fem1c fem-1 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:6,380,506...6,413,006 JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) MGI PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327
JBrowse link
G Gid4 GID complex subunit 4 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:3,385,312...3,408,842
Ensembl chrNW_004624849:3,386,101...3,408,924
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (PMID:16543145) UniProt PMID:16543145 NCBI chrNW_004624907:511,919...522,106
Ensembl chrNW_004624907:511,889...522,168
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:1,097,323...1,196,556
Ensembl chrNW_004624820:1,097,463...1,196,499
JBrowse link
G Hectd3 HECT domain E3 ubiquitin protein ligase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624906:902,668...911,099
Ensembl chrNW_004624906:902,344...911,575
JBrowse link
G Itch itchy E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624842:4,840,848...4,977,785
Ensembl chrNW_004624842:4,842,419...4,935,699
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISO (PMID:18397884) UniProt PMID:18397884 NCBI chrNW_004624767:20,668,759...20,675,367
Ensembl chrNW_004624767:20,666,763...20,675,164
JBrowse link
G Kcmf1 potassium channel modulatory factor 1 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chrNW_004624749:18,017,862...18,098,444
Ensembl chrNW_004624749:18,017,528...18,099,020
JBrowse link
G Kctd10 potassium channel tetramerization domain containing 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:10,951,870...10,978,045
Ensembl chrNW_004624747:10,951,883...10,979,210
JBrowse link
G Kctd17 potassium channel tetramerization domain containing 17 involved_in ISO (PMID:25270598) UniProt PMID:25270598 NCBI chrNW_004624752:10,728,872...10,738,429
Ensembl chrNW_004624752:10,729,344...10,738,428
JBrowse link
G Kctd2 potassium channel tetramerization domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:4,863,312...4,877,690
Ensembl chrNW_004624801:4,863,232...4,878,504
JBrowse link
G Kctd5 potassium channel tetramerization domain containing 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:383,389...411,824
Ensembl chrNW_004624824:383,434...410,257
JBrowse link
G Keap1 kelch like ECH associated protein 1 involved_in ISO (PMID:15601839) UniProt PMID:15601839 NCBI chrNW_004624828:2,580,812...2,595,023
Ensembl chrNW_004624828:2,580,861...2,595,275
JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (PMID:24854087) UniProt PMID:24854087 NCBI chrNW_004624807:10,093,518...10,144,484
Ensembl chrNW_004624807:10,092,934...10,143,399
JBrowse link
G Klhdc2 kelch domain containing 2 involved_in ISO (PMID:26138980) UniProt PMID:26138980 NCBI chrNW_004624731:18,935,841...18,973,879
Ensembl chrNW_004624731:18,962,888...18,974,096
JBrowse link
G Klhdc3 kelch domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:16,479,389...16,485,573
Ensembl chrNW_004624754:16,479,389...16,483,824
JBrowse link
G Klhl20 kelch like family member 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624771:8,068,522...8,117,329 JBrowse link
G Klhl22 kelch like family member 22 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624945:409,093...446,619
Ensembl chrNW_004624945:408,999...441,975
JBrowse link
G Klhl3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:9,299,217...9,413,390
Ensembl chrNW_004624733:9,299,229...9,413,469
JBrowse link
G Klhl40 kelch like family member 40 acts_upstream_of ISO (PMID:24960163) MGI PMID:24960163 NCBI chrNW_004624730:77,004,787...77,012,643
Ensembl chrNW_004624730:77,007,063...77,011,413
JBrowse link
G Klhl42 kelch like family member 42 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624935:181,511...254,738
Ensembl chrNW_004624935:186,464...254,951
JBrowse link
G LOC101710854 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:13,293,261...13,308,610
Ensembl chrNW_004624782:13,293,421...13,308,102
JBrowse link
G Maea macrophage erythroblast attacher, E3 ubiquitin ligase involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624755:25,934,569...25,968,726
Ensembl chrNW_004624755:25,934,569...25,968,706
JBrowse link
G Marchf6 membrane associated ring-CH-type finger 6 involved_in ISO (PMID:24449766) UniProt PMID:24449766 NCBI chrNW_004624751:7,715,065...7,781,320
Ensembl chrNW_004624751:7,715,007...7,780,460
JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004624923:952,782...1,062,391 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:19386237) MGI PMID:19386237 NCBI chrNW_004624795:1,553,582...1,558,110
Ensembl chrNW_004624795:1,553,037...1,558,197
JBrowse link
G Nedd4l NEDD4 like E3 ubiquitin protein ligase involved_in ISO (PMID:21463633) BHF-UCL PMID:21463633 NCBI chrNW_004624792:3,553,185...3,903,288
Ensembl chrNW_004624792:3,553,004...3,902,468
JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:15983046) UniProt PMID:15983046 NCBI chrNW_004624787:14,355,330...14,381,353
Ensembl chrNW_004624787:14,355,791...14,381,251
JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:15930137)
(PMID:24914213)
UniProt
MGI
PMID:15930137 PMID:24914213 NCBI chrNW_004624756:8,558,470...8,560,610 JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:2,746,853...2,774,038
Ensembl chrNW_004624741:2,748,796...2,774,119
JBrowse link
G Otud5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO (PMID:25470037) MGI PMID:25470037 NCBI chrNW_004624893:702,895...736,623 JBrowse link
G Pbk PDZ binding kinase acts_upstream_of ISO (PMID:21715333) MGI PMID:21715333 NCBI chrNW_004624758:22,603,076...22,625,817
Ensembl chrNW_004624758:22,603,039...22,625,763
JBrowse link
G Pcbp2 poly(rC) binding protein 2 involved_in ISO (PMID:19881509) UniProt PMID:19881509 NCBI chrNW_004624904:1,553,253...1,579,212
Ensembl chrNW_004624904:1,555,635...1,578,982
JBrowse link
G Pcnp PEST proteolytic signal containing nuclear protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624789:15,429,698...15,450,352
Ensembl chrNW_004624789:15,429,793...15,448,422
JBrowse link
G Peli1 pellino E3 ubiquitin protein ligase 1 involved_in ISO (PMID:29883609) UniProt PMID:29883609 NCBI chrNW_004624762:9,328,275...9,382,996
Ensembl chrNW_004624762:9,328,109...9,386,067
JBrowse link
G Pja2 praja ring finger ubiquitin ligase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624743:27,251,937...27,331,213
Ensembl chrNW_004624743:27,254,436...27,301,934
JBrowse link
G Plaa phospholipase A2 activating protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624736:31,127,955...31,169,680
Ensembl chrNW_004624736:31,127,955...31,169,739
JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (PMID:22406621) UniProt PMID:22406621 NCBI chrNW_004624781:464,858...498,146
Ensembl chrNW_004624781:464,658...497,775
JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:15748170) MGI PMID:15748170 NCBI chrNW_004624877:3,293,980...3,328,337
Ensembl chrNW_004624877:3,292,244...3,328,660
JBrowse link
G Ppp2cb protein phosphatase 2 catalytic subunit beta acts_upstream_of_or_within ISO (PMID:16717086) MGI PMID:16717086 NCBI chrNW_004624780:13,332,636...13,369,301 JBrowse link
G Ppp2r5c protein phosphatase 2 regulatory subunit B'gamma acts_upstream_of_or_within ISO (PMID:16717086) MGI PMID:16717086 NCBI chrNW_004624734:2,337,649...2,471,319
Ensembl chrNW_004624734:2,335,243...2,470,811
JBrowse link
G Prame PRAME nuclear receptor transcriptional regulator involved_in ISO (PMID:26138980) UniProt PMID:26138980 NCBI chrNW_004624747:8,914,226...8,927,648
Ensembl chrNW_004624747:8,913,531...8,918,222
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:11439185), (PMID:21376232) ParkinsonsUK-UCL PMID:11439185 PMID:21376232 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747
JBrowse link
G Psma5 proteasome 20S subunit alpha 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624772:5,127,271...5,148,928
Ensembl chrNW_004624772:5,122,928...5,148,911
JBrowse link
G Psmb3 proteasome 20S subunit beta 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624795:3,932,534...3,939,411
Ensembl chrNW_004624795:3,931,923...3,939,305
JBrowse link
G Psmb5 proteasome 20S subunit beta 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15198663) Ensembl
MGI
PMID:15198663 GO_REF:0000107 NCBI chrNW_004624820:9,506,119...9,513,034
Ensembl chrNW_004624820:9,505,725...9,513,034
JBrowse link
G Psmc5 proteasome 26S subunit, ATPase 5 involved_in ISO (PMID:12110588) UniProt PMID:12110588 NCBI chrNW_004624849:1,349,787...1,354,776
Ensembl chrNW_004624849:1,349,720...1,354,775
JBrowse link
G Psmd1 proteasome 26S subunit, non-ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624843:4,369,592...4,464,285
Ensembl chrNW_004624843:4,369,590...4,464,287
JBrowse link
G Psmd2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:72,286,625...72,297,415
Ensembl chrNW_004624730:72,286,324...72,297,465
JBrowse link
G Psmd4 proteasome 26S subunit ubiquitin receptor, non-ATPase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:18,600,021...18,609,887
Ensembl chrNW_004624772:18,600,021...18,610,014
JBrowse link
G Psmd6 proteasome 26S subunit, non-ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624888:1,883,365...1,903,011
Ensembl chrNW_004624888:1,883,445...1,903,011
JBrowse link
G Psmd7 proteasome 26S subunit, non-ATPase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:16,470,999...16,481,791
Ensembl chrNW_004624746:16,470,221...16,482,047
JBrowse link
G Psmd8 proteasome 26S subunit, non-ATPase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:11,837,914...11,845,380
Ensembl chrNW_004624794:11,837,095...11,845,363
JBrowse link
G Psmf1 proteasome inhibitor subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624741:2,402,616...2,443,461
Ensembl chrNW_004624741:2,409,187...2,443,071
JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in IEA UniProt
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624901:515,761...522,845
Ensembl chrNW_004624901:516,855...523,337
JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein involved_in IEA UniProt
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624758:4,168,341...4,211,893
Ensembl chrNW_004624758:4,167,215...4,211,487
JBrowse link
G Rbck1 RANBP2-type and C3HC4-type zinc finger containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:1,503,017...1,523,542
Ensembl chrNW_004624741:1,502,942...1,523,675
JBrowse link
G Rbx1 ring-box 1 involved_in IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624752:7,547,702...7,560,605
Ensembl chrNW_004624752:7,546,959...7,560,668
JBrowse link
G Rffl ring finger and FYVE like domain containing E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624875:2,896,888...2,964,838
Ensembl chrNW_004624875:2,897,832...2,964,866
JBrowse link
G Rmnd5a required for meiotic nuclear division 5 homolog A involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624749:16,574,317...16,626,109
Ensembl chrNW_004624749:16,573,790...16,626,096
JBrowse link
G Rmnd5b required for meiotic nuclear division 5 homolog B involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624733:41,357,840...41,371,203
Ensembl chrNW_004624733:41,358,910...41,375,513
JBrowse link
G Rnf122 ring finger protein 122 involved_in ISO (PMID:20553626) UniProt PMID:20553626 NCBI chrNW_004624780:10,391,328...10,415,351
Ensembl chrNW_004624780:10,391,180...10,408,755
JBrowse link
G Rnf126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:7,856,822...7,865,644
Ensembl chrNW_004624828:7,856,470...7,869,926
JBrowse link
G Rnf139 ring finger protein 139 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:30,715,373...30,726,591
Ensembl chrNW_004624735:30,715,384...30,726,862
JBrowse link
G Rnf145 ring finger protein 145 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:30,239,475...30,288,171
Ensembl chrNW_004624733:30,245,689...30,290,684
JBrowse link
G Rnf170 ring finger protein 170 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31076723) MGI
Ensembl
PMID:31076723 GO_REF:0000107 NCBI chrNW_004624780:67,160...127,620
Ensembl chrNW_004624780:66,049...126,383
JBrowse link
G Rnf186 ring finger protein 186 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624764:4,897,234...4,898,470 JBrowse link
G Rnf187 ring finger protein 187 involved_in ISO (PMID:20852630) UniProt PMID:20852630 NCBI chrNW_004624937:1,156,602...1,162,288
Ensembl chrNW_004624937:1,156,666...1,162,288
JBrowse link
G Rnf216 ring finger protein 216 involved_in ISO (PMID:19893624) UniProt PMID:19893624 NCBI chrNW_004624740:27,861,094...28,024,619
Ensembl chrNW_004624740:27,885,778...28,024,710
JBrowse link
G Rnf24 ring finger protein 24 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:5,015,475...5,073,652
Ensembl chrNW_004624741:5,012,368...5,048,688
JBrowse link
G Rnf34 ring finger protein 34 involved_in ISO (PMID:15069192)
(PMID:22064484)
(PMID:22064484), (PMID:25012219)
UniProt PMID:15069192 PMID:22064484 PMID:25012219 NCBI chrNW_004624747:21,904,652...21,920,579
Ensembl chrNW_004624747:21,904,667...21,920,778
JBrowse link
G Rnf4 ring finger protein 4 involved_in ISO (PMID:18408734), (PMID:20212317), (PMID:20943951) UniProt PMID:18408734 PMID:20212317 PMID:20943951 NCBI chrNW_004624755:25,139,637...25,163,586
Ensembl chrNW_004624755:25,141,567...25,153,942
JBrowse link
G Rnf7 ring finger protein 7 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624730:18,379,177...18,388,505
Ensembl chrNW_004624730:18,379,682...18,390,788
JBrowse link
G Senp1 SUMO specific peptidase 1 acts_upstream_of ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004624816:4,173,321...4,231,711
Ensembl chrNW_004624816:4,179,890...4,232,312
JBrowse link
G Sh3bgrl SH3 domain binding glutamate rich protein like involved_in ISO (PMID:34331014) UniProt PMID:34331014 NCBI chrNW_004624852:7,033,344...7,113,039
Ensembl chrNW_004624852:7,033,344...7,113,021
JBrowse link
G Sharpin SHANK associated RH domain interactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:12,719,196...12,723,578
Ensembl chrNW_004624735:12,719,762...12,723,348
JBrowse link
G Siah1 siah E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624914:2,166,958...2,193,357 JBrowse link
G Siah2 siah E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:28,159,096...28,178,832
Ensembl chrNW_004624730:28,158,750...28,178,810
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:21841822) UniProt PMID:21841822 NCBI chrNW_004624754:2,304,476...2,332,705
Ensembl chrNW_004624754:2,304,634...2,330,946
JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:21841822) UniProt PMID:21841822 NCBI chrNW_004624794:12,239,363...12,259,561
Ensembl chrNW_004624794:12,235,263...12,259,276
JBrowse link
G Skp1 S-phase kinase associated protein 1 involved_in ISO (PMID:15145941), (PMID:34480022) UniProt PMID:15145941 PMID:34480022 NCBI chrNW_004624733:38,051,280...38,069,648 JBrowse link
G Skp2 S-phase kinase associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:18,796,055...18,858,692
Ensembl chrNW_004624759:18,830,323...18,858,712
JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:32,480,138...32,615,436
Ensembl chrNW_004624740:32,483,092...32,615,260
JBrowse link
G Smurf2 SMAD specific E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624870:243,381...365,543
Ensembl chrNW_004624870:246,260...366,033
JBrowse link
G Socs2 suppressor of cytokine signaling 2 involved_in ISO (PMID:11781573), (PMID:21980433), (PMID:25505247), (PMID:34857742) UniProt PMID:11781573 PMID:21980433 PMID:25505247 PMID:34857742 NCBI chrNW_004624750:13,333,393...13,339,018 JBrowse link
G Socs7 suppressor of cytokine signaling 7 involved_in ISO (PMID:24210661) UniProt PMID:24210661 NCBI chrNW_004624795:4,159,493...4,185,677
Ensembl chrNW_004624795:4,159,402...4,186,037
JBrowse link
G Spop speckle type BTB/POZ protein acts_upstream_of_or_within
involved_in
ISO (PMID:20811152)
(PMID:22085717), (PMID:32109420)
MGI
UniProt
PMID:20811152 PMID:22085717 PMID:32109420 NCBI chrNW_004624795:5,698,131...5,769,209 JBrowse link
G Spopl speckle type BTB/POZ protein like involved_in ISO (PMID:22632832) UniProt PMID:22632832 NCBI chrNW_004624732:38,214,876...38,297,363
Ensembl chrNW_004624732:38,277,686...38,293,970
JBrowse link
G Spsb1 splA/ryanodine receptor domain and SOCS box containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:2,965,222...3,014,544
Ensembl chrNW_004624818:2,964,984...2,983,433
JBrowse link
G Spsb2 splA/ryanodine receptor domain and SOCS box containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624860:3,537,255...3,539,519
Ensembl chrNW_004624860:3,536,610...3,539,106
JBrowse link
G Spsb3 splA/ryanodine receptor domain and SOCS box containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:469,732...475,767
Ensembl chrNW_004624913:470,002...475,765
JBrowse link
G Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:17,692,124...17,774,321
Ensembl chrNW_004624730:17,692,959...17,774,497
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249
JBrowse link
G Syvn1 synoviolin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:21,269,909...21,276,739
Ensembl chrNW_004624767:21,270,841...21,275,653
JBrowse link
G Tbl1x transducin beta like 1 X-linked acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chrNW_004624834:7,086,348...7,281,974 JBrowse link
G Tbl1xr1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chrNW_004624730:54,835,624...55,013,474
Ensembl chrNW_004624730:54,835,624...54,884,835
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in ISO (PMID:23616576) UniProt PMID:23616576 NCBI chrNW_004624795:4,442,188...4,453,544
Ensembl chrNW_004624795:4,442,188...4,453,143
JBrowse link
G Tnfaip1 TNF alpha induced protein 1 involved_in IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624786:939,619...952,698
Ensembl chrNW_004624786:939,605...952,675
JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in ISO (PMID:18077445) UniProt PMID:18077445 NCBI chrNW_004624736:37,209,709...37,221,921
Ensembl chrNW_004624736:37,210,291...37,221,747
JBrowse link
G Trim13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624748:4,683,518...4,765,944 JBrowse link
G Trim2 tripartite motif containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624858:4,509,893...4,683,241
Ensembl chrNW_004624858:4,554,681...4,667,312
JBrowse link
G Trim26 tripartite motif containing 26 involved_in ISO (PMID:29203640) UniProt PMID:29203640 NCBI chrNW_004624754:25,238,992...25,258,454
Ensembl chrNW_004624754:25,230,073...25,259,980
JBrowse link
G Trim28 tripartite motif containing 28 involved_in ISO (PMID:36354136) FlyBase PMID:36354136 NCBI chrNW_004624832:49,324...56,113 JBrowse link
G Trim3 tripartite motif containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624817:7,965,976...7,991,426
Ensembl chrNW_004624817:7,965,976...7,991,411
JBrowse link
G Trim45 tripartite motif containing 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:12,802,710...12,815,432
Ensembl chrNW_004624772:12,806,174...12,815,456
JBrowse link
G Trim63 tripartite motif containing 63 acts_upstream_of_or_within ISO (PMID:15601779) MGI PMID:15601779 NCBI chrNW_004624764:10,126,345...10,139,829
Ensembl chrNW_004624764:10,128,751...10,139,687
JBrowse link
G Trim72 tripartite motif containing 72 acts_upstream_of_or_within ISO (PMID:23965929) MGI PMID:23965929 NCBI chrNW_004624782:14,269,073...14,274,767
Ensembl chrNW_004624782:14,269,160...14,274,625
JBrowse link
G Trim9 tripartite motif containing 9 involved_in ISO (PMID:20085810) UniProt PMID:20085810 NCBI chrNW_004624731:17,851,106...17,969,461
Ensembl chrNW_004624731:17,851,116...17,969,453
JBrowse link
G Trip12 thyroid hormone receptor interactor 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624843:3,589,068...3,723,115
Ensembl chrNW_004624843:3,586,734...3,722,237
JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B involved_in ISO (PMID:10373550) UniProt PMID:10373550 NCBI chrNW_004624733:37,890,350...37,907,846
Ensembl chrNW_004624733:37,891,280...37,906,066
JBrowse link
G Ube2c ubiquitin conjugating enzyme E2 C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624790:8,756,758...8,760,078
Ensembl chrNW_004624790:8,751,662...8,760,057
JBrowse link
G Ube2d1 ubiquitin conjugating enzyme E2 D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:5,214,261...5,248,138
Ensembl chrNW_004624791:5,213,967...5,248,129
JBrowse link
G Ube2d3 ubiquitin conjugating enzyme E2 D3 involved_in
acts_upstream_of_or_within
ISO (PMID:20347421)
(PMID:15601779)
UniProt
MGI
PMID:15601779 PMID:20347421 NCBI chrNW_004624830:5,213,464...5,240,809 JBrowse link
G Ube2h ubiquitin conjugating enzyme E2 H acts_upstream_of_or_within ISO (PMID:23965929) MGI PMID:23965929 NCBI chrNW_004624783:6,292,784...6,432,083
Ensembl chrNW_004624783:6,292,684...6,432,208
JBrowse link
G Ube2i ubiquitin conjugating enzyme E2 I ISO RGD PMID:9013644 RGD:730030 NCBI chrNW_004624913:2,025,241...2,041,394
Ensembl chrNW_004624913:2,025,528...2,041,690
JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:35927303) UniProt PMID:35927303 NCBI chrNW_004624750:13,432,657...13,468,797
Ensembl chrNW_004624750:13,432,661...13,457,776
JBrowse link
G Ube2s ubiquitin conjugating enzyme E2 S involved_in ISO (PMID:27910872) UniProt PMID:27910872 NCBI chrNW_004624832:1,913,948...1,918,750
Ensembl chrNW_004624832:1,913,636...1,918,848
JBrowse link
G Ube2w ubiquitin conjugating enzyme E2 W involved_in ISO (PMID:35927303)
(PMID:21855799)
UniProt PMID:21855799 PMID:35927303 NCBI chrNW_004624744:17,314,249...17,485,193
Ensembl chrNW_004624744:17,328,604...17,407,817
JBrowse link
G Ube4b ubiquitination factor E4B acts_upstream_of_or_within ISO (PMID:23509263) MGI PMID:23509263 NCBI chrNW_004624818:2,448,809...2,561,947
Ensembl chrNW_004624818:2,447,368...2,562,128
JBrowse link
G Ubr1 ubiquitin protein ligase E3 component n-recognin 1 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chrNW_004624804:10,035,122...10,225,640
Ensembl chrNW_004624804:10,036,225...10,225,571
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chrNW_004624754:16,701,950...16,798,293
Ensembl chrNW_004624754:16,701,331...16,798,897
JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chrNW_004624764:4,223,784...4,358,923
Ensembl chrNW_004624764:4,223,784...4,358,885
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29378950) UniProt PMID:29378950 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517
JBrowse link
G Ubxn11 UBX domain protein 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:10,318,744...10,341,269
Ensembl chrNW_004624764:10,318,040...10,337,959
JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624738:6,313,925...6,341,999
Ensembl chrNW_004624738:6,323,404...6,341,996
JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:33,676,900...33,725,388
Ensembl chrNW_004624744:33,696,129...33,725,383
JBrowse link
G Ubxn7 UBX domain protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:61,505,225...61,571,945
Ensembl chrNW_004624730:61,507,095...61,571,931
JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624770:10,741,247...10,769,837 JBrowse link
G Usp44 ubiquitin specific peptidase 44 involved_in ISO (PMID:21853124) UniProt PMID:21853124 NCBI chrNW_004624750:11,697,919...11,725,421
Ensembl chrNW_004624750:11,710,218...11,724,529
JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in ISO (PMID:34290272) UniProt PMID:34290272 NCBI chrNW_004624731:5,350,912...5,359,286 JBrowse link
G Wdr26 WD repeat domain 26 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624835:6,000,566...6,041,917
Ensembl chrNW_004624835:6,005,173...6,041,915
JBrowse link
G Wwp1 WW domain containing E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:5,329,535...5,435,819 JBrowse link
G Wwp2 WW domain containing E3 ubiquitin protein ligase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624746:16,501,320...16,661,423
Ensembl chrNW_004624746:16,501,324...16,654,691
JBrowse link
G Zfand2a zinc finger AN1-type containing 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:26,730,499...26,741,426
Ensembl chrNW_004624740:26,727,557...26,741,411
JBrowse link
G Zfand2b zinc finger AN1-type containing 2B involved_in IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624823:5,805,147...5,808,500
Ensembl chrNW_004624823:5,805,147...5,808,485
JBrowse link
G Znrf1 zinc and ring finger 1 involved_in ISO (PMID:22057101) UniProt PMID:22057101 NCBI chrNW_004624746:11,847,627...11,954,637
Ensembl chrNW_004624746:11,848,425...11,954,784
JBrowse link
G Znrf4 zinc and ring finger 4 involved_in ISO (PMID:28656966) UniProt PMID:28656966 NCBI chrNW_004624828:4,633,434...4,635,366 JBrowse link
G Zswim8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184234) UniProt PMID:33184234 NCBI chrNW_004624754:7,302,177...7,316,308
Ensembl chrNW_004624754:7,302,249...7,316,108
JBrowse link
protein arginylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ate1 arginyltransferase 1 acts_upstream_of_or_within ISO (PMID:16002466) MGI PMID:16002466 NCBI chrNW_004624737:24,744,557...24,910,310
Ensembl chrNW_004624737:24,744,574...24,907,680
JBrowse link
G Liat1 ligand of ATE1 involved_in ISO (PMID:25369936) UniProt PMID:25369936 NCBI chrNW_004624786:3,814,511...3,822,100 JBrowse link
protein deubiquitination involved in ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101707725 tumor necrosis factor alpha-induced protein 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624886:9...12,579 JBrowse link
G Otud7b OTU deubiquitinase 7B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:17,717,178...17,776,940
Ensembl chrNW_004624772:17,721,218...17,787,299
JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chrNW_004624784:9,302,741...9,352,127
Ensembl chrNW_004624784:9,303,745...9,378,105
JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:14,403,361...14,527,854
Ensembl chrNW_004624762:14,405,560...14,527,639
JBrowse link
G Zranb1 zinc finger RANBP2-type containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:22,168,025...22,228,990
Ensembl chrNW_004624737:22,165,011...22,228,635
JBrowse link
protein quality control for misfolded or incompletely synthesized proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 involved_in ISO (PMID:29632312), (PMID:30244831), (PMID:31011209), (PMID:32075755) UniProt PMID:29632312 PMID:30244831 PMID:31011209 PMID:32075755 NCBI chrNW_004624823:5,780,287...5,787,543
Ensembl chrNW_004624823:5,780,484...5,787,007
JBrowse link
G Atxn3 ataxin 3 involved_in ISO (PMID:21855799) UniProt PMID:21855799 NCBI chrNW_004624734:8,685,994...8,726,329 JBrowse link
G Clpp caseinolytic mitochondrial matrix peptidase proteolytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:3,499,141...3,505,774
Ensembl chrNW_004624828:3,498,794...3,505,769
JBrowse link
G Fbxl17 F-box and leucine rich repeat protein 17 involved_in ISO (PMID:30190310) UniProt PMID:30190310 NCBI chrNW_004624743:25,787,012...26,278,813
Ensembl chrNW_004624743:25,789,733...26,278,728
JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:14675537) BHF-UCL PMID:14675537 NCBI chrNW_004624893:608,744...627,600
Ensembl chrNW_004624893:608,540...628,580
JBrowse link
G Lonp1 lon peptidase 1, mitochondrial involved_in IEA UniProt
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624828:4,494,786...4,516,772
Ensembl chrNW_004624828:4,494,813...4,516,510
JBrowse link
G Lonp2 lon peptidase 2, peroxisomal involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624914:2,041,353...2,155,669
Ensembl chrNW_004624914:2,041,213...2,155,669
JBrowse link
G Oma1 OMA1 zinc metallopeptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624862:1,745,188...1,823,261
Ensembl chrNW_004624862:1,745,400...1,824,005
JBrowse link
G Saysd1 SAYSVFN motif domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:19,190,157...19,195,995
Ensembl chrNW_004624754:19,190,151...19,195,470
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249
JBrowse link
G Ube2w ubiquitin conjugating enzyme E2 W involved_in ISO (PMID:21855799) UniProt PMID:21855799 NCBI chrNW_004624744:17,314,249...17,485,193
Ensembl chrNW_004624744:17,328,604...17,407,817
JBrowse link
G Yme1l1 YME1 like 1 ATPase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624796:2,178,102...2,215,837
Ensembl chrNW_004624796:2,179,170...2,215,903
JBrowse link
G Zer1 zyg-11 related cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chrNW_004624760:6,247,016...6,270,621
Ensembl chrNW_004624760:6,247,052...6,270,621
JBrowse link
G Zswim8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:35989311) UniProt PMID:35989311 NCBI chrNW_004624754:7,302,177...7,316,308
Ensembl chrNW_004624754:7,302,249...7,316,108
JBrowse link
G Zyg11b zyg-11 family member B, cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chrNW_004624859:359,309...453,395
Ensembl chrNW_004624859:364,268...454,038
JBrowse link
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptpn23 protein tyrosine phosphatase non-receptor type 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:73,975,490...74,004,454
Ensembl chrNW_004624730:73,975,655...74,004,572
JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:5,318,803...5,328,542
Ensembl chrNW_004624795:5,318,802...5,328,768
JBrowse link
G Stam signal transducing adaptor molecule involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624796:10,195,897...10,269,311
Ensembl chrNW_004624796:10,201,518...10,269,311
JBrowse link
G Vps25 vacuolar protein sorting 25 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:1,428,448...1,432,583
Ensembl chrNW_004624795:1,428,448...1,432,574
JBrowse link
G Vps28 VPS28 subunit of ESCRT-I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:12,426,687...12,430,698
Ensembl chrNW_004624735:12,426,543...12,430,698
JBrowse link
G Vps36 vacuolar protein sorting 36 homolog involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624748:1,880,542...1,908,541
Ensembl chrNW_004624748:1,881,411...1,908,505
JBrowse link
regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085
JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (PMID:25088257) ParkinsonsUK-UCL PMID:25088257 NCBI chrNW_004624730:3,134,419...3,145,512
Ensembl chrNW_004624730:3,133,595...3,146,221
JBrowse link
regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E involved_in ISO (PMID:28111074) UniProt PMID:28111074 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:19103752) MGI PMID:19103752 NCBI chrNW_004624831:868,417...1,065,591
Ensembl chrNW_004624831:868,563...1,060,248
JBrowse link
G Dlgap1 DLG associated protein 1 involved_in ISO PMID:15496675 BHF-UCL PMID:15496675 RGD:8553458 NCBI chrNW_004624770:13,543,893...13,841,213
Ensembl chrNW_004624770:13,542,680...13,841,352
JBrowse link
G Dnaaf4 dynein axonemal assembly factor 4 involved_in ISO (PMID:19423554) UniProt PMID:19423554 NCBI chrNW_004624731:6,215,798...6,270,210
Ensembl chrNW_004624731:6,215,737...6,241,793
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:27107699) MGI PMID:27107699 NCBI chrNW_004624753:8,715,898...8,805,728
Ensembl chrNW_004624753:8,715,898...8,804,194
JBrowse link
G Gpx1 glutathione peroxidase 1 involved_in ISO (PMID:12751788) BHF-UCL PMID:12751788 NCBI chrNW_004624730:3,313,773...3,314,870
Ensembl chrNW_004624730:3,313,972...3,314,626
JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:27920251)
(PMID:29400713)
MGI PMID:27920251 PMID:29400713 NCBI chrNW_004624795:4,652,221...4,663,341
Ensembl chrNW_004624795:4,652,637...4,662,454
JBrowse link
G Nudt15 nudix hydrolase 15 involved_in ISO (PMID:19419956) UniProt PMID:19419956 NCBI chrNW_004624748:6,807,667...6,824,477
Ensembl chrNW_004624748:6,804,740...6,823,757
JBrowse link
G Pithd1 PITH domain containing 1 acts_upstream_of_or_within ISO (PMID:31915251) MGI PMID:31915251 NCBI chrNW_004624764:8,325,680...8,337,185
Ensembl chrNW_004624764:8,325,683...8,337,185
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:23001567) MGI PMID:23001567 NCBI chrNW_004624913:118,520...166,939
Ensembl chrNW_004624913:118,733...165,859
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in ISO (PMID:17565987) UniProt PMID:17565987 NCBI chrNW_004624901:1,319,426...1,336,848
Ensembl chrNW_004624901:1,319,062...1,336,744
JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 involved_in ISO (PMID:18162577) UniProt PMID:18162577 NCBI chrNW_004624732:4,057,519...4,150,178
Ensembl chrNW_004624732:4,057,810...4,150,209
JBrowse link
G Psme1 proteasome activator subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,397,344...8,400,273
Ensembl chrNW_004624820:8,397,344...8,400,285
JBrowse link
G Psme2 proteasome activator subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,389,348...8,393,498
Ensembl chrNW_004624820:8,389,286...8,393,498
JBrowse link
G Psme3 proteasome activator subunit 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:1,373,214...1,378,481
Ensembl chrNW_004624795:1,372,032...1,378,382
JBrowse link
G Rhbdf1 rhomboid 5 homolog 1 involved_in ISO (PMID:21439629) UniProt PMID:21439629 NCBI chrNW_004624913:937,484...954,458
Ensembl chrNW_004624913:937,484...954,428
JBrowse link
G Tmf1 TATA element modulatory factor 1 involved_in ISO (PMID:16792503) UniProt PMID:16792503 NCBI chrNW_004624773:3,587,753...3,618,089 JBrowse link
G Ubb ubiquitin B acts_upstream_of_or_within ISO (PMID:17571083) MGI PMID:17571083 NCBI chrNW_004624877:4,050,188...4,051,849
Ensembl chrNW_004624877:4,050,188...4,051,768
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:18162577) UniProt PMID:18162577 NCBI chrNW_004624814:529,100...568,387
Ensembl chrNW_004624814:529,084...567,666
JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624770:10,741,247...10,769,837 JBrowse link
regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Araf A-Raf proto-oncogene, serine/threonine kinase involved_in ISO (PMID:22609986) UniProt PMID:22609986 NCBI chrNW_004624978:99,605...110,645
Ensembl chrNW_004624978:100,505...110,646
JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:36822331) DisProt PMID:36822331 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723
JBrowse link
G Commd1 copper metabolism domain containing 1 involved_in ISO (PMID:17183367) UniProt PMID:17183367 NCBI chrNW_004624762:11,302,730...11,407,074 JBrowse link
G Dda1 DET1 and DDB1 associated 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624908:631,429...637,158
Ensembl chrNW_004624908:631,432...637,104
JBrowse link
G Desi1 desumoylating isopeptidase 1 involved_in ISO (PMID:29666234) UniProt PMID:29666234 NCBI chrNW_004624752:7,010,941...7,031,125
Ensembl chrNW_004624752:7,010,963...7,031,125
JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (PMID:29374064) UniProt PMID:29374064 NCBI chrNW_004624756:23,209,402...23,213,817
Ensembl chrNW_004624756:23,209,390...23,213,802
JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within ISO (PMID:22405651) MGI PMID:22405651 NCBI chrNW_004624742:5,434,588...5,477,647 JBrowse link
G Gna12 G protein subunit alpha 12 involved_in ISO (PMID:22609986) UniProt PMID:22609986 NCBI chrNW_004624740:30,134,262...30,245,079
Ensembl chrNW_004624740:30,133,435...30,245,079
JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:12643283) UniProt PMID:12643283 NCBI chrNW_004624901:515,761...522,845
Ensembl chrNW_004624901:516,855...523,337
JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein involved_in ISO (PMID:19435460) UniProt PMID:19435460 NCBI chrNW_004624758:4,168,341...4,211,893
Ensembl chrNW_004624758:4,167,215...4,211,487
JBrowse link
G Ube2k ubiquitin conjugating enzyme E2 K acts_upstream_of_or_within ISO (PMID:18710920) MGI PMID:18710920 NCBI chrNW_004624761:27,205,034...27,277,016
Ensembl chrNW_004624761:27,205,034...27,276,884
JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO (PMID:27113755)
(PMID:15280365)
UniProt PMID:15280365 PMID:27113755 NCBI chrNW_004624885:1,382,302...1,398,474
Ensembl chrNW_004624885:1,383,897...1,398,484
JBrowse link
G Ufl1 UFM1 specific ligase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20228063) MGI
TreeGrafter
PMID:20228063 GO_REF:0000118 NCBI chrNW_004624810:8,804,330...8,832,460
Ensembl chrNW_004624810:8,805,964...8,832,358
JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO (PMID:19056892) MGI PMID:19056892 NCBI chrNW_004624816:3,221,573...3,227,102
Ensembl chrNW_004624816:3,210,828...3,227,096
JBrowse link
G Xpo1 exportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624833:375,817...424,499
Ensembl chrNW_004624833:375,820...424,499
JBrowse link
regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 involved_in ISO (PMID:30442713) UniProt PMID:30442713 NCBI chrNW_004624753:4,304,787...4,415,684
Ensembl chrNW_004624753:4,326,748...4,414,957
JBrowse link
G Lats1 large tumor suppressor kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624785:8,356,238...8,405,877
Ensembl chrNW_004624785:8,369,922...8,408,919
JBrowse link
G Nub1 negative regulator of ubiquitin like proteins 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624800:5,314,203...5,345,301
Ensembl chrNW_004624800:5,315,381...5,345,801
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISO (PMID:19880522) UniProt PMID:19880522 NCBI chrNW_004624758:22,065,448...22,182,604
Ensembl chrNW_004624758:22,124,836...22,182,605
JBrowse link
G Tmem168 transmembrane protein 168 acts_upstream_of_or_within ISO (PMID:32175648) MGI PMID:32175648 NCBI chrNW_004624827:6,522,145...6,557,543
Ensembl chrNW_004624827:6,526,073...6,557,851
JBrowse link
retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:28,983,753...28,986,785
Ensembl chrNW_004624749:28,983,802...28,986,643
JBrowse link
G Derl1 derlin 1 acts_upstream_of_or_within
involved_in
ISO (PMID:15215855)
(PMID:15215856)
(PMID:25660456)
MGI
UniProt
ParkinsonsUK-UCL
PMID:15215855 PMID:15215856 PMID:25660456 NCBI chrNW_004624735:31,832,711...31,857,687
Ensembl chrNW_004624735:31,832,701...31,857,687
JBrowse link
G Derl2 derlin 2 involved_in
acts_upstream_of_or_within
ISO (PMID:16449189)
(PMID:21220515)
UniProt
MGI
PMID:16449189 PMID:21220515 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288
JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624833:7,964,815...7,992,277
Ensembl chrNW_004624833:7,964,810...7,992,582
JBrowse link
G Faf2 Fas associated factor family member 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624733:13,608,993...13,674,200
Ensembl chrNW_004624733:13,608,360...13,674,175
JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in