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ONTOLOGY REPORT - ANNOTATIONS

Term:5'-deoxyribose-5-phosphate lyase activity
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Accession:GO:0051575 term browser browse the term
Definition:Catalysis of the reaction: a 5'-end 2'-deoxyribose-2'-deoxyribonucleotide-DNA = (2E,4S)-4-hydroxypenten-2-al-5-phosphate + a 5'-end 5'-phospho-2'-deoxyribonucleoside-DNA + H+.
Synonyms:exact_synonym: 5'-deoxyribose phosphate activity
 broad_synonym: dRP lyase activity;   dRPase activity
 xref: RHEA:76255


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5'-deoxyribose-5-phosphate lyase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga1 high mobility group AT-hook 1 enables ISO (PMID:19465398) RGD PMID:19465398 NCBI chr20:5,611,088...5,618,755
Ensembl chr20:5,611,694...5,618,752 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO
ISS		 (PMID:19465398)
GO_REF:0000024		 RGD
UniProt		 PMID:19465398 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Polb DNA polymerase beta enables ISO (PMID:9614142) RGD PMID:9614142 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit enables IEA
ISO
ISS		 GO_REF:0000107
(PMID:9770471)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:9770471 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:133,382,764...133,399,578
Ensembl chr 1:133,382,766...133,398,567 		JBrowse link
G Poll DNA polymerase lambda enables ISO
ISS		 (PMID:19806195)
GO_REF:0000024		 RGD
UniProt		 PMID:19806195 GO_REF:0000024 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662 		JBrowse link
G Polq DNA polymerase theta enables ISO (PMID:19188258) RGD PMID:19188258 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 contributes_to ISO (PMID:20383123) RGD PMID:20383123 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 enables ISO (PMID:20383123) RGD PMID:20383123 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762 		JBrowse link
Term paths to the root
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Term Annotations click to browse term
  molecular_function 20626
    catalytic activity 6028
      catalytic activity, acting on a nucleic acid 649
        catalytic activity, acting on DNA 283
          5'-deoxyribose-5-phosphate lyase activity 8
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