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ONTOLOGY REPORT - ANNOTATIONS

Term:cartilage development
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Accession:GO:0051216 term browser browse the term
Definition:The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
Synonyms:exact_synonym: cartilage biogenesis;   cartilage biosynthesis;   cartilage element development;   cartilage formation;   cartilage organ development;   chondrogenesis
 xref: Wikipedia:Chondrogenesis


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cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:8895222) MGI PMID:8895222 NCBI chr  X:60,203,336...60,356,525
Ensembl chr  X:60,203,270...60,352,869 		JBrowse link
G BBS1 Bardet-Biedl syndrome 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19195025) Ensembl
MGI		 PMID:19195025 GO_REF:0000107 NCBI chr18:50,816,126...50,835,354 JBrowse link
G BBS2 Bardet-Biedl syndrome 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19195025) Ensembl
MGI		 PMID:19195025 GO_REF:0000107 NCBI chr 2:59,650,439...59,705,728
Ensembl chr 2:59,677,216...59,705,730 		JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr24:15,199,667...15,211,509
Ensembl chr24:15,200,291...15,212,217 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IEA UniProt GO_REF:0000043 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15492776) Ensembl
MGI		 PMID:15492776 GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923 		JBrowse link
G CD44 CD44 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:32,735,493...32,826,483
Ensembl chr18:32,737,907...32,827,107 		JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:19828624) MGI PMID:19828624 NCBI chr38:2,878,677...2,956,226 JBrowse link
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16079159) Ensembl
MGI		 PMID:16079159 GO_REF:0000107 NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558 		JBrowse link
G CHSY1 chondroitin sulfate synthase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22280990) Ensembl
MGI		 PMID:22280990 GO_REF:0000107 NCBI chr 3:39,844,227...39,916,484
Ensembl chr 3:39,844,195...40,021,573 		JBrowse link
G CNMD chondromodulin involved_in IEA UniProt GO_REF:0000043 NCBI chr22:9,745,959...9,792,663
Ensembl chr22:9,753,441...9,759,713 		JBrowse link
G COL10A1 collagen type X alpha 1 chain ISO RGD PMID:10853827 RGD:704421 NCBI chr12:71,803,372...71,810,049
Ensembl chr12:71,798,692...71,809,399 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:4100752), (PMID:4110409), (PMID:7859283), (PMID:886247) Ensembl
MGI		 PMID:886247 PMID:4100752 PMID:4110409 PMID:7859283 GO_REF:0000107 MGI:60257 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:2,626,829...2,656,680
Ensembl chr12:2,627,828...2,655,814 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7276808), (PMID:9165353)
(PMID:10100048), (PMID:9061443)
(PMID:11171689), (PMID:11680679), (PMID:7590256), (PMID:9832566)		 RGD
MGI
Ensembl		 PMID:7276808 PMID:7590256 PMID:9061443 PMID:9165353 PMID:9822201 More... GO_REF:0000107 RGD:70694 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in ISO (PMID:31655293) MGI PMID:31655293 NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19248115), (PMID:22448243) Ensembl
MGI		 PMID:19248115 PMID:22448243 GO_REF:0000107 NCBI chr31:39,301,718...39,319,895
Ensembl chr31:39,301,748...39,448,062 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO (PMID:11680679)
(PMID:18191556)		 MGI PMID:11680679 PMID:18191556 NCBI chr12:32,763,782...32,847,456
Ensembl chr12:32,764,496...32,847,574 		JBrowse link
G COMP cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17588960)
(PMID:18191556)
(PMID:23951406)		 Ensembl
MGI		 PMID:17588960 PMID:18191556 PMID:23951406 GO_REF:0000107 NCBI chr20:44,306,813...44,314,575
Ensembl chr20:44,306,859...44,314,625 		JBrowse link
G CREB3L2 cAMP responsive element binding protein 3 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:10,683,169...10,803,071
Ensembl chr16:10,682,935...11,248,029 		JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20812917) Ensembl
MGI		 PMID:20812917 GO_REF:0000107 NCBI chr16:22,219,324...22,546,501
Ensembl chr16:22,219,861...22,392,937 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:18,085,865...18,098,868
Ensembl chr24:18,084,725...18,097,157 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21098571) MGI PMID:21098571 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879 		JBrowse link
G DLX2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:7590232) MGI PMID:7590232 NCBI chr36:16,499,009...16,502,365
Ensembl chr36:16,484,302...16,502,510 		JBrowse link
G DSPP dentin sialophosphoprotein ISO femoral head RGD PMID:20679519 RGD:12914771 NCBI chr32:11,017,440...11,022,780 JBrowse link
G EDN1 endothelin 1 acts_upstream_of_or_within ISO (PMID:8152482) MGI PMID:8152482 NCBI chr35:11,808,892...11,815,383
Ensembl chr35:11,808,892...11,815,383 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:24770645)
(PMID:15625282), (PMID:25260930)		 MGI PMID:15625282 PMID:24770645 PMID:25260930 NCBI chr 1:251,985...322,081
Ensembl chr 1:252,103...322,718 		JBrowse link
G ERRFI1 ERBB receptor feedback inhibitor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24550287) Ensembl
MGI		 PMID:24550287 GO_REF:0000107 NCBI chr 5:61,621,964...61,636,152
Ensembl chr 5:61,622,550...61,636,148 		JBrowse link
G ESRRA estrogen related receptor alpha ISO RGD PMID:17170100 RGD:1625657 NCBI chr18:52,755,547...52,762,938
Ensembl chr18:52,756,344...52,763,355 		JBrowse link
G EVC EvC ciliary complex subunit 1 ISO RGD PMID:15278943 RGD:1598913 NCBI chr 3:70,937,957...71,007,431
Ensembl chr 3:70,937,926...71,016,115 		JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9733575) Ensembl
MGI		 PMID:9733575 GO_REF:0000107 NCBI chr28:14,219,724...14,336,846
Ensembl chr28:14,219,893...14,301,924 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:15781473) MGI PMID:15781473 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896 		JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509771) Ensembl
MGI		 PMID:15509771 GO_REF:0000107 NCBI chr17:22,340,469...22,364,994
Ensembl chr17:22,341,322...22,361,772 		JBrowse link
G GATA3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760 		JBrowse link
G GNAS GNAS complex locus involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15797856) Ensembl
MGI		 PMID:15797856 GO_REF:0000107 NCBI chr24:43,643,409...43,658,641
Ensembl chr24:43,643,405...43,658,657 		JBrowse link
G HES5 hes family bHLH transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:57,387,961...57,389,412
Ensembl chr 5:57,388,674...57,389,388 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11691837) Ensembl
MGI		 PMID:11691837 GO_REF:0000107 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692 		JBrowse link
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI		 PMID:9441667 GO_REF:0000107 NCBI chr14:40,280,866...40,326,559
Ensembl chr14:40,280,861...40,296,147 		JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI		 PMID:9441667 GO_REF:0000107 NCBI chr 9:24,810,299...24,837,434
Ensembl chr 9:24,809,739...24,836,058 		JBrowse link
G HOXC4 homeobox C4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8626021) Ensembl
MGI		 PMID:8626021 GO_REF:0000107 NCBI chr27:1,209,510...1,246,873
Ensembl chr27:1,172,229...1,226,572 		JBrowse link
G HOXD3 homeobox D3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI		 PMID:9441667 GO_REF:0000107 NCBI chr36:19,961,393...19,981,672
Ensembl chr36:19,960,761...19,980,525 		JBrowse link
G HYAL1 hyaluronidase 1 involved_in ISO (PMID:11944887) UniProt PMID:11944887 NCBI chr20:39,035,924...39,040,443
Ensembl chr20:39,038,514...39,040,368 		JBrowse link
G HYAL2 hyaluronidase 2 involved_in ISO (PMID:11944887) UniProt PMID:11944887 NCBI chr20:39,029,426...39,034,451
Ensembl chr20:39,031,735...39,034,130 		JBrowse link
G HYAL3 hyaluronidase 3 involved_in ISO (PMID:11944887) UniProt PMID:11944887 NCBI chr20:39,041,940...39,047,388
Ensembl chr20:39,042,070...39,047,365 		JBrowse link
G IFT80 intraflagellar transport 80 acts_upstream_of_or_within ISO (PMID:32227389) MGI PMID:32227389 NCBI chr34:26,332,456...26,455,428 JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17191253) Ensembl
MGI		 PMID:17191253 GO_REF:0000107 NCBI chr37:25,616,942...25,622,989 JBrowse link
G IL17F interleukin 17F involved_in ISO (PMID:11574464) UniProt PMID:11574464 NCBI chr12:19,904,283...19,908,497
Ensembl chr12:19,904,126...19,908,619 		JBrowse link
G ITGB8 integrin subunit beta 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:34,370,957...34,449,091
Ensembl chr14:34,349,232...34,444,235 		JBrowse link
G LUM lumican ISO RGD PMID:19746167 RGD:2317685 NCBI chr15:31,792,872...31,800,444
Ensembl chr15:31,793,233...31,800,912 		JBrowse link
G MAPK3 mitogen-activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:17644814) MGI PMID:17644814 NCBI chr 6:18,109,184...18,115,728
Ensembl chr 6:18,109,222...18,114,425 		JBrowse link
G MATN3 matrilin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23951406) Ensembl
MGI		 PMID:23951406 GO_REF:0000107 NCBI chr17:15,037,175...15,054,451
Ensembl chr17:15,037,995...15,054,436 		JBrowse link
G MGP matrix Gla protein involved_in IEA UniProt GO_REF:0000043 NCBI chr27:31,735,301...31,738,673
Ensembl chr27:31,734,660...31,738,673 		JBrowse link
G MIR140 microRNA mir-140 acts_upstream_of_or_within ISO (PMID:20466812) MGI PMID:20466812 NCBI chr 5:79,814,256...79,814,316
Ensembl chr 5:79,814,246...79,814,326 		JBrowse link
G MKKS MKKS centrosomal shuttling protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19195025) Ensembl
MGI		 PMID:19195025 GO_REF:0000107 NCBI chr24:11,887,504...11,914,055
Ensembl chr24:11,898,236...11,913,740 		JBrowse link
G MSX1 msh homeobox 1 ISO RGD PMID:10332146 RGD:1600462 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:11668602)
(PMID:10742104)		 RGD
MGI		 PMID:10332146 PMID:10742104 PMID:11668602 RGD:1600462 NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407 		JBrowse link
G NFATC2 nuclear factor of activated T cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:37,606,977...37,734,813
Ensembl chr24:37,609,561...37,771,132 		JBrowse link
G NFIA nuclear factor I A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:48,489,521...49,064,867
Ensembl chr 5:48,496,773...49,064,848 		JBrowse link
G NOG noggin involved_in
acts_upstream_of		 IEA
ISO		 (PMID:10684250) UniProt
MGI
Ensembl		 PMID:10684250 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,283,680...52,339,247
Ensembl chr11:52,321,590...52,339,249 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:8631261) MGI PMID:8631261 NCBI chr 2:79,813,835...79,952,490
Ensembl chr 2:79,815,748...79,915,003 		JBrowse link
G PITX1 paired like homeodomain 1 acts_upstream_of_or_within ISO (PMID:10101115) MGI PMID:10101115 NCBI chr11:23,069,731...23,075,085
Ensembl chr11:23,069,716...23,080,941 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chr 6:38,811,051...38,865,503
Ensembl chr 6:38,837,964...38,865,503 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9876178)
(PMID:7758948)		 Ensembl
MGI		 PMID:7758948 PMID:9876178 GO_REF:0000107 NCBI chr 7:28,065,570...28,138,734
Ensembl chr 7:28,068,711...28,138,787 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9876178) MGI PMID:9876178 NCBI chr 9:54,089,046...54,112,595
Ensembl chr 9:54,093,163...54,096,348 		JBrowse link
G SATB2 SATB homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16751105) Ensembl
MGI		 PMID:16751105 GO_REF:0000107 NCBI chr37:8,548,295...8,837,416
Ensembl chr37:8,551,017...8,731,149 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:18729207) MGI PMID:18729207 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765 		JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19224984) Ensembl
MGI		 PMID:19224984 GO_REF:0000107 NCBI chr15:44,093,491...44,171,177
Ensembl chr15:44,095,497...44,170,098 		JBrowse link
G SMAD5 SMAD family member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19224984) Ensembl
MGI		 PMID:19224984 GO_REF:0000107 NCBI chr11:24,027,603...24,082,673
Ensembl chr11:24,028,126...24,078,169 		JBrowse link
G SMAD9 SMAD family member 9 acts_upstream_of_or_within ISO (PMID:19224984) MGI PMID:19224984 NCBI chr25:3,768,851...3,844,645
Ensembl chr25:3,779,197...3,841,321 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17591962)
(PMID:27325675)		 Ensembl
MGI		 PMID:17591962 PMID:27325675 GO_REF:0000107 NCBI chr 5:81,089,657...81,172,173
Ensembl chr 5:81,142,888...81,172,189 		JBrowse link
G SNORC secondary ossification center associated regulator of chondrocyte maturation involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr25:44,453,804...44,472,159
Ensembl chr25:44,466,852...44,470,935 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in
acts_upstream_of_or_within		 ISO (MGI:5780653|PMID:26150426)
(PMID:15634692)
(MGI:6414706|PMID:15529345)		 UniProt
MGI		 PMID:15529345 PMID:15634692 PMID:26150426 MGI:5780653 MGI:6414706 NCBI chr27:22,857,661...23,855,709
Ensembl chr27:23,452,985...23,851,380 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in
acts_upstream_of_or_within		 ISO (MGI:5780653|PMID:26150426)
(PMID:15634692)
(MGI:6414706|PMID:15529345)		 UniProt
MGI		 PMID:15529345 PMID:15634692 PMID:26150426 MGI:5780653 MGI:6414706 NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of
acts_upstream_of_or_within
involved_in		 ISO
IEA
ISS		 (PMID:19047045)
(PMID:11371614)		 RGD
MGI
Ensembl
UniProt		 PMID:11371614 PMID:15512770 PMID:19047045 GO_REF:0000024 GO_REF:0000107 RGD:1599098 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G SULF1 sulfatase 1 involved_in IEA
ISS		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr29:18,709,406...18,885,248
Ensembl chr29:18,709,445...18,884,378 		JBrowse link
G SULF2 sulfatase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr24:34,732,000...34,850,347
Ensembl chr24:34,732,037...34,828,569 		JBrowse link
G TAPT1 transmembrane anterior posterior transformation 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:64,124,645...64,189,509
Ensembl chr 3:64,124,045...64,188,071 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:13,886,869...13,946,480
Ensembl chr23:13,889,000...13,977,636 		JBrowse link
G TIMP1 TIMP metallopeptidase inhibitor 1 ISO RGD PMID:16208432 RGD:8694091 NCBI chr  X:41,201,623...41,205,314
Ensembl chr  X:41,201,638...41,205,310 		JBrowse link
G TRIP11 thyroid hormone receptor interactor 11 involved_in ISO (PMID:30728324) UniProt PMID:30728324 NCBI chr 8:1,244,104...1,314,251
Ensembl chr 8:1,247,155...1,354,720 		JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:3471366 RGD:2317423 NCBI chr 7:67,487,927...67,497,747
Ensembl chr 7:67,487,927...67,497,747 		JBrowse link
G WNT7A Wnt family member 7A involved_in ISO (MGI:4821073|PMID:16826533) BHF-UCL PMID:16826533 MGI:4821073 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of ISO (PMID:19047045) MGI PMID:19047045 NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9389660) Ensembl
MGI		 PMID:9389660 GO_REF:0000107 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495 		JBrowse link
articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BGN biglycan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19932218) Ensembl
MGI		 PMID:19932218 GO_REF:0000107 NCBI chr  X:121,330,371...121,334,634
Ensembl chr  X:121,330,259...121,334,634 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:28402956)
(PMID:22359666), (PMID:22927960)		 MGI PMID:22359666 PMID:22927960 PMID:28402956 NCBI chr 1:251,985...322,081
Ensembl chr 1:252,103...322,718 		JBrowse link
G EPYC epiphycan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19932218) Ensembl
MGI
TreeGrafter		 PMID:19932218 GO_REF:0000107 GO_REF:0000118 NCBI chr15:31,670,926...31,708,667
Ensembl chr15:31,671,182...31,708,674 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26098911) Ensembl
MGI		 PMID:26098911 GO_REF:0000107 NCBI chr34:26,332,456...26,455,428 JBrowse link
G OGN osteoglycin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:98,939,374...98,959,173
Ensembl chr 1:98,939,429...98,957,543 		JBrowse link
G OPTC opticin involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr38:215,404...223,247
Ensembl chr38:215,404...223,247 		JBrowse link
G PBXIP1 PBX homeobox interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30659184) Ensembl
MGI		 PMID:30659184 GO_REF:0000107 NCBI chr 7:42,514,306...42,524,056
Ensembl chr 7:42,514,423...42,523,585 		JBrowse link
bronchus cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24218621) Ensembl
MGI		 PMID:24218621 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24218621) Ensembl
MGI		 PMID:24218621 GO_REF:0000107 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544 		JBrowse link
G BARX2 BARX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15800003) Ensembl
MGI		 PMID:15800003 GO_REF:0000107 NCBI chr 5:5,238,795...5,311,027
Ensembl chr 5:5,239,517...5,310,648 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10631181) Ensembl
MGI		 PMID:10631181 GO_REF:0000107 NCBI chr32:17,761,555...17,978,056
Ensembl chr32:17,870,904...18,016,444 		JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15305294) Ensembl
MGI		 PMID:15305294 GO_REF:0000107 NCBI chr 1:25,508,082...25,511,058
Ensembl chr 1:25,507,662...25,510,145 		JBrowse link
G CHAD chondroadherin ISO RGD PMID:9461555 RGD:69806 NCBI chr 9:26,397,902...26,401,824
Ensembl chr 9:26,398,595...26,402,204 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012 		JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
G FGF4 fibroblast growth factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr18:48,413,480...48,417,494
Ensembl chr18:48,413,187...48,416,977 		JBrowse link
G FGF6 fibroblast growth factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr27:40,440,298...40,456,933
Ensembl chr27:40,440,377...40,455,257 		JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:5,145,647...5,221,558
Ensembl chr12:5,146,037...5,220,603 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chr17:11,720,857...11,724,308 JBrowse link
G MYF5 myogenic factor 5 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chr15:23,049,235...23,051,604
Ensembl chr15:23,048,585...23,051,970 		JBrowse link
G OTOR otoraplin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10998416) Ensembl
MGI
TreeGrafter		 PMID:10998416 GO_REF:0000107 GO_REF:0000118 NCBI chr24:6,095,781...6,099,583
Ensembl chr24:6,096,412...6,099,285 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:11593033) MGI PMID:11593033 NCBI chr 6:38,811,051...38,865,503
Ensembl chr 6:38,837,964...38,865,503 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chr 1:95,209,122...95,280,956
Ensembl chr 1:95,088,745...95,280,151 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr27:22,857,661...23,855,709
Ensembl chr27:23,452,985...23,851,380 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:10319868)
(PMID:12414734)		 UniProt
MGI
Ensembl		 PMID:10319868 PMID:12414734 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G SULF1 sulfatase 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr29:18,709,406...18,885,248
Ensembl chr29:18,709,445...18,884,378 		JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242 		JBrowse link
G THRA thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9250685) Ensembl
MGI		 PMID:9250685 GO_REF:0000107 NCBI chr 9:22,469,466...22,493,445
Ensembl chr 9:22,468,594...22,493,445 		JBrowse link
G UNCX UNC homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10804168)
(PMID:10804169)		 Ensembl
MGI		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr 6:15,652,600...15,657,016
Ensembl chr 6:15,653,576...15,657,927 		JBrowse link
G WNT7A Wnt family member 7A involved_in ISO (PMID:17202865) AgBase PMID:17202865 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436 		JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15622513) Ensembl
MGI		 PMID:15622513 GO_REF:0000107 NCBI chr31:37,230,900...37,247,170 JBrowse link
G COL1A1 collagen type I alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18248096) Ensembl
MGI		 PMID:18248096 GO_REF:0000107 NCBI chr 9:26,183,852...26,199,927
Ensembl chr 9:26,183,852...26,199,927 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 mandibular condylar cartilage
(PMID:8989518)
(PMID:11680679)
(PMID:9022054)		 RGD
MGI
Ensembl		 PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 GO_REF:0000107 RGD:8661659 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21185280), (PMID:23958822) Ensembl
MGI		 PMID:21185280 PMID:23958822 GO_REF:0000107 NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469 		JBrowse link
G GHR growth hormone receptor ISO RGD PMID:15749813 RGD:2307373 NCBI chr 4:67,021,821...67,245,499
Ensembl chr 4:67,022,252...67,290,473 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766 		JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10545953) MGI PMID:10545953 NCBI chr 2:77,263,534...77,366,558
Ensembl chr 2:77,301,858...77,367,724 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537395) Ensembl
MGI		 PMID:16537395 GO_REF:0000107 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566 		JBrowse link
G SIK3 SIK family kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22318228) Ensembl
MGI		 PMID:22318228 GO_REF:0000107 NCBI chr 5:16,623,756...16,733,259
Ensembl chr 5:16,527,504...16,733,243 		JBrowse link
G TRPV4 transient receptor potential cation channel subfamily V member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:17,293,334...17,330,156
Ensembl chr26:17,262,100...17,330,165 		JBrowse link
cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17764670) Ensembl
MGI		 PMID:17764670 GO_REF:0000107 NCBI chr 4:55,231,061...55,234,640
Ensembl chr 4:55,231,481...55,234,265 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17764670) Ensembl
MGI		 PMID:17764670 GO_REF:0000107 NCBI chr25:24,140,496...24,143,143
Ensembl chr25:24,141,243...24,152,958 		JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441679) Ensembl
MGI		 PMID:9441679 GO_REF:0000107 NCBI chr14:40,315,409...40,319,001
Ensembl chr14:40,315,639...40,317,768 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17420000) MGI PMID:17420000 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852 		JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12489152) Ensembl
MGI		 PMID:12489152 GO_REF:0000107 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17376812) Ensembl
MGI		 PMID:17376812 GO_REF:0000107 NCBI chr24:36,498,343...36,503,623
Ensembl chr24:36,498,062...36,503,628 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO (PMID:17376812) MGI PMID:17376812 NCBI chr29:1,154,132...1,156,653
Ensembl chr29:1,154,036...1,156,653 		JBrowse link
chondroblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan ISO RGD PMID:20001227 RGD:2315747 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544 		JBrowse link
G CCN1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:9441684) MGI PMID:9441684 NCBI chr 6:62,443,285...62,446,246
Ensembl chr 6:62,443,675...62,445,994 		JBrowse link
G FGF2 fibroblast growth factor 2 involved_in ISO (PMID:17167778) UniProt PMID:17167778 NCBI chr19:17,403,288...17,463,143
Ensembl chr19:16,994,661...17,463,151 		JBrowse link
G FGF4 fibroblast growth factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:48,413,480...48,417,494
Ensembl chr18:48,413,187...48,416,977 		JBrowse link
G GDF5 growth differentiation factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928 		JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr 9:22,254,803...22,298,614
Ensembl chr 9:22,254,806...22,289,459 		JBrowse link
chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9664687) Ensembl
MGI		 PMID:9664687 GO_REF:0000107 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:11,342,292...11,540,199
Ensembl chr37:11,342,384...11,533,024 		JBrowse link
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18539921) Ensembl
MGI		 PMID:18539921 GO_REF:0000107 NCBI chr29:8,176,977...8,215,561
Ensembl chr29:8,182,508...8,215,868 		JBrowse link
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16079159) Ensembl
MGI		 PMID:16079159 GO_REF:0000107 NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558 		JBrowse link
G CHSY1 chondroitin sulfate synthase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22280990) Ensembl
MGI		 PMID:22280990 GO_REF:0000107 NCBI chr 3:39,844,227...39,916,484
Ensembl chr 3:39,844,195...40,021,573 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:4100752) Ensembl
MGI		 PMID:4100752 GO_REF:0000107 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012 		JBrowse link
G COMP cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22006726)
(PMID:17588960)		 Ensembl
MGI		 PMID:17588960 PMID:22006726 GO_REF:0000107 NCBI chr20:44,306,813...44,314,575
Ensembl chr20:44,306,859...44,314,625 		JBrowse link
G ECM1 extracellular matrix protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20138147) Ensembl
MGI		 PMID:20138147 GO_REF:0000107 NCBI chr17:59,696,125...59,701,990
Ensembl chr17:59,696,477...59,701,744 		JBrowse link
G EIF2AK3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO (PMID:12865332) MGI PMID:12865332 NCBI chr17:37,886,397...37,950,671
Ensembl chr17:37,886,601...37,949,812 		JBrowse link
G FGF18 fibroblast growth factor 18 acts_upstream_of_or_within ISO (PMID:17014841) MGI PMID:17014841 NCBI chr 4:40,714,891...40,748,892
Ensembl chr 4:40,715,060...40,748,518 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of ISO (PMID:14668414) MGI PMID:14668414 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766 		JBrowse link
G MIA3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO (PMID:21606205) MGI PMID:21606205 NCBI chr38:16,880,411...16,936,368
Ensembl chr38:16,879,740...16,935,844 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:10742104) MGI PMID:10742104 NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407 		JBrowse link
G RARG retinoic acid receptor gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10213384) Ensembl
MGI		 PMID:10213384 GO_REF:0000107 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:18729207) MGI PMID:18729207 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17481601) Ensembl
MGI		 PMID:17481601 GO_REF:0000107 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24505141)
(PMID:17591962)		 Ensembl
MGI		 PMID:17591962 PMID:24505141 GO_REF:0000107 NCBI chr 5:81,089,657...81,172,173
Ensembl chr 5:81,142,888...81,172,189 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18415932) Ensembl
MGI		 PMID:18415932 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G SULF1 sulfatase 1 involved_in IEA
ISS		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr29:18,709,406...18,885,248
Ensembl chr29:18,709,445...18,884,378 		JBrowse link
G SULF2 sulfatase 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr24:34,732,000...34,850,347
Ensembl chr24:34,732,037...34,828,569 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SERPINH1 serpin family H member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22492985) Ensembl
MGI		 PMID:22492985 GO_REF:0000107 NCBI chr21:23,032,761...23,041,649
Ensembl chr21:23,032,767...23,041,625 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21788370) Ensembl
MGI		 PMID:21788370 GO_REF:0000107 NCBI chr 5:81,089,657...81,172,173
Ensembl chr 5:81,142,888...81,172,189 		JBrowse link
chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:45,141,870...45,159,255
Ensembl chr18:45,142,586...45,159,255 		JBrowse link
G ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:73,887,959...74,188,909
Ensembl chr 4:73,887,924...74,001,984 		JBrowse link
G ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:58,182,316...58,223,194
Ensembl chr 3:58,188,004...58,226,185 		JBrowse link
G ARID5A AT-rich interaction domain 5A acts_upstream_of_or_within ISO (PMID:21346191) MGI PMID:21346191 NCBI chr17:34,320,791...34,333,660
Ensembl chr17:34,321,177...34,333,621 		JBrowse link
G B9D2 B9 domain containing 2 involved_in ISO (PMID:15040835) UniProt PMID:15040835 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:15,199,667...15,211,509
Ensembl chr24:15,200,291...15,212,217 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17481601) Ensembl
MGI		 PMID:17481601 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18363966) Ensembl
MGI		 PMID:18363966 GO_REF:0000107 NCBI chr32:17,761,555...17,978,056
Ensembl chr32:17,870,904...18,016,444 		JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15305294) Ensembl
MGI		 PMID:15305294 GO_REF:0000107 NCBI chr 1:25,508,082...25,511,058
Ensembl chr 1:25,507,662...25,510,145 		JBrowse link
G CCN3 cellular communication network factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:18,507,586...18,515,755
Ensembl chr13:18,507,580...18,514,619 		JBrowse link
G CHRDL2 chordin like 2 acts_upstream_of_or_within ISO (PMID:14660436) MGI PMID:14660436 NCBI chr21:23,670,257...23,702,788
Ensembl chr21:23,670,238...23,702,788 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11668593) Ensembl
MGI		 PMID:11668593 GO_REF:0000107 NCBI chr12:2,626,829...2,656,680
Ensembl chr12:2,627,828...2,655,814 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11680679), (PMID:7590256) RGD
MGI
Ensembl		 PMID:7590256 PMID:11680679 PMID:21627568 GO_REF:0000107 RGD:5134342 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in ISO (PMID:31655293) MGI PMID:31655293 NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain ISO RGD PMID:8992886 RGD:1600950 NCBI chr12:32,763,782...32,847,456
Ensembl chr12:32,764,496...32,847,574 		JBrowse link
G CREB3L2 cAMP responsive element binding protein 3 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:10,683,169...10,803,071
Ensembl chr16:10,682,935...11,248,029 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:16818445)
(PMID:15866163)		 Ensembl
MGI		 PMID:15866163 PMID:16818445 GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G CYTL1 cytokine like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17644814) Ensembl
MGI		 PMID:17644814 GO_REF:0000107 NCBI chr 3:70,354,099...70,358,521
Ensembl chr 3:70,354,090...70,359,128 		JBrowse link
G DLL4 delta like canonical Notch ligand 4 ISO RGD PMID:26872979 RGD:11521858 NCBI chr30:8,059,463...8,068,742
Ensembl chr30:8,059,512...8,067,940 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20080592), (PMID:20404326), (PMID:23458899), (PMID:28768899) Ensembl
MGI		 PMID:20080592 PMID:20404326 PMID:23458899 PMID:28768899 GO_REF:0000107 NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469 		JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16236767) Ensembl
MGI		 PMID:16236767 GO_REF:0000107 NCBI chr18:44,987,310...45,122,339
Ensembl chr18:44,987,748...45,129,974 		JBrowse link
G FGF18 fibroblast growth factor 18 acts_upstream_of ISO (PMID:15781473) MGI PMID:15781473 NCBI chr 4:40,714,891...40,748,892
Ensembl chr 4:40,715,060...40,748,518 		JBrowse link
G FGF9 fibroblast growth factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17544391) Ensembl
MGI		 PMID:17544391 GO_REF:0000107 NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17544391) Ensembl
MGI		 PMID:17544391 GO_REF:0000107 NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261 		JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509771) Ensembl
MGI		 PMID:15509771 GO_REF:0000107 NCBI chr17:22,340,469...22,364,994
Ensembl chr17:22,341,322...22,361,772 		JBrowse link
G GDF5 growth differentiation factor 5 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:9885252) Ensembl
MGI		 PMID:9885252 GO_REF:0000107 NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23333501) Ensembl
MGI		 PMID:23333501 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:16284117) Ensembl
MGI		 PMID:16284117 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G GPLD1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISO (MGI:3583476|PMID:15946906) UniProt PMID:15946906 MGI:3583476 NCBI chr35:22,495,001...22,556,264
Ensembl chr35:22,495,073...22,554,105 		JBrowse link
G HES5 hes family bHLH transcription factor 5 NOT|involved_in ISO (MGI:5285816|PMID:17093926) UniProt PMID:17093926 MGI:5285816 NCBI chr 5:57,387,961...57,389,412
Ensembl chr 5:57,388,674...57,389,388 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15073147) Ensembl
MGI		 PMID:15073147 GO_REF:0000107 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692 		JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of ISO (PMID:14668414) MGI PMID:14668414 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766 		JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10545953) MGI PMID:10545953 NCBI chr 2:77,263,534...77,366,558
Ensembl chr 2:77,301,858...77,367,724 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23333501) Ensembl
MGI		 PMID:23333501 GO_REF:0000107 NCBI chr34:26,332,456...26,455,428 JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16284117)
(PMID:15951842)		 Ensembl
MGI		 PMID:15951842 PMID:16284117 GO_REF:0000107 NCBI chr37:25,616,942...25,622,989 JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:11790802) Ensembl
MGI		 PMID:11790802 GO_REF:0000107 NCBI chr18:51,653,783...51,667,793
Ensembl chr18:51,659,098...51,667,433 		JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17644814) Ensembl
MGI		 PMID:17644814 GO_REF:0000107 NCBI chr12:5,145,647...5,221,558
Ensembl chr12:5,146,037...5,220,603 		JBrowse link
G MATN1 matrilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16877353) Ensembl
MGI		 PMID:16877353 GO_REF:0000107 NCBI chr 2:70,225,642...70,234,972 JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17336904) MGI PMID:17336904 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852 		JBrowse link
G MEF2D myocyte enhancer factor 2D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17336904) Ensembl
MGI		 PMID:17336904 GO_REF:0000107 NCBI chr 7:41,455,771...41,473,807
Ensembl chr 7:41,458,514...41,470,197 		JBrowse link
G MUSTN1 musculoskeletal, embryonic nuclear protein 1 involved_in IEA InterPro GO_REF:0000002
G NFIB nuclear factor I B involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:34,573,136...35,010,319
Ensembl chr11:34,579,431...34,901,322 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,283,680...52,339,247
Ensembl chr11:52,321,590...52,339,249 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225 		JBrowse link
G PRKCA protein kinase C alpha acts_upstream_of_or_within ISO (PMID:17644814) MGI PMID:17644814 NCBI chr 9:13,638,106...13,879,571
Ensembl chr 9:13,644,010...13,967,630 		JBrowse link
G PTH1R parathyroid hormone 1 receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9832460)
(PMID:16476422)		 Ensembl
MGI		 PMID:9832460 PMID:16476422 GO_REF:0000107 NCBI chr20:41,905,265...41,924,712
Ensembl chr20:41,905,273...41,925,794 		JBrowse link
G PTHLH parathyroid hormone like hormone acts_upstream_of ISO (PMID:8895385) MGI PMID:8895385 NCBI chr27:19,781,557...19,795,078
Ensembl chr27:19,781,557...19,795,078 		JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:3,061,621...3,204,625
Ensembl chr22:3,063,239...3,257,726 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chr 1:95,209,122...95,280,956
Ensembl chr 1:95,088,745...95,280,151 		JBrowse link
G RUNX1 RUNX family transcription factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr31:30,170,859...30,420,344
Ensembl chr31:30,170,605...30,420,839 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10072783)
(PMID:22916278)
(PMID:16476422)		 Ensembl
MGI
TreeGrafter		 PMID:10072783 PMID:16476422 PMID:22916278 GO_REF:0000107 GO_REF:0000118 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785 		JBrowse link
G RUNX3 RUNX family transcription factor 3 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 2:74,829,960...74,856,947 JBrowse link
G RUNX3 RUNX family transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278) TreeGrafter
MGI		 PMID:22916278 GO_REF:0000118
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:4418577|PMID:20059955) UniProt PMID:20059955 MGI:4418577 NCBI chr13:37,701,781...37,704,949
Ensembl chr13:37,703,232...37,704,657 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278) Ensembl
MGI		 PMID:22916278 GO_REF:0000107 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566 		JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509 		JBrowse link
G SLC26A2 solute carrier family 26 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:59,068,601...59,090,803
Ensembl chr 4:59,074,008...59,078,892 		JBrowse link
G SLC39A14 solute carrier family 39 member 14 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:4950776|PMID:21445361) UniProt
Ensembl		 PMID:21445361 GO_REF:0000107 MGI:4950776 NCBI chr25:34,854,371...34,901,030
Ensembl chr25:34,846,653...34,869,695 		JBrowse link
G SNX19 sorting nexin 19 involved_in
acts_upstream_of_or_within		 ISO (PMID:19877062) GO_Central
MGI		 PMID:19877062 NCBI chr 5:4,044,597...4,085,438
Ensembl chr 5:4,045,097...4,084,363 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr27:22,857,661...23,855,709
Ensembl chr27:23,452,985...23,851,380 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within		 ISS
ISO
IEA
IBA		 (PMID:11371614)
(PMID:12414734)		 UniProt
MGI
TreeGrafter
GO_Central
Ensembl		 PMID:11371614 PMID:12414734 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
G TGFBI transforming growth factor beta induced ISO RGD PMID:16546826 RGD:1599388 NCBI chr11:23,932,038...23,971,983
Ensembl chr11:23,938,453...23,971,607 		JBrowse link
G TRPS1 transcriptional repressor GATA binding 1 acts_upstream_of_or_within ISO (PMID:18363966) MGI PMID:18363966 NCBI chr13:15,017,180...15,273,177
Ensembl chr13:15,022,652...15,273,666 		JBrowse link
G TWSG1 twisted gastrulation BMP signaling modulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14681194) Ensembl
MGI		 PMID:14681194 GO_REF:0000107 NCBI chr 7:75,337,347...75,397,485
Ensembl chr 7:75,335,235...75,398,325 		JBrowse link
G WNT10B Wnt family member 10B involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:5,599,905...5,605,506
Ensembl chr27:5,601,089...5,605,501 		JBrowse link
G WNT2B Wnt family member 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:63,034,719...63,054,369
Ensembl chr17:63,035,883...63,047,956 		JBrowse link
G WNT5B Wnt family member 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:43,662,482...43,679,713
Ensembl chr27:43,620,284...43,677,078 		JBrowse link
G WNT7A Wnt family member 7A involved_in ISO (PMID:17202865) AgBase PMID:17202865 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of ISO (PMID:16818445) MGI PMID:16818445 NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295 		JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19623616) Ensembl
MGI		 PMID:19623616 GO_REF:0000107 NCBI chr 9:14,559,476...14,588,950
Ensembl chr 9:14,559,388...14,588,530 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25639508) Ensembl
MGI		 PMID:25639508 GO_REF:0000107 NCBI chr37:25,616,942...25,622,989 JBrowse link
G SCUBE2 signal peptide, CUB domain and EGF like domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25639508) Ensembl
MGI		 PMID:25639508 GO_REF:0000107 NCBI chr21:32,370,361...32,435,608
Ensembl chr21:32,370,913...32,574,588 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G TRIP11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO (PMID:20089971) MGI PMID:20089971 NCBI chr 8:1,244,104...1,314,251
Ensembl chr 8:1,247,155...1,354,720 		JBrowse link
chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23958822) Ensembl
MGI		 PMID:23958822 GO_REF:0000107 NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469 		JBrowse link
G MEX3C mex-3 RNA binding family member C acts_upstream_of_or_within ISO (PMID:22357625) MGI PMID:22357625 NCBI chr 1:23,818,790...23,838,106
Ensembl chr 1:23,818,099...23,836,297 		JBrowse link
G MEX3C mex-3 RNA binding family member C involved_in IEA Ensembl GO_REF:0000107
G SOX9 SRY-box transcription factor 9 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STC1 stanniocalcin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:33,615,436...33,628,138
Ensembl chr25:33,615,451...33,625,218 		JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL27A1 collagen type XXVII alpha 1 chain acts_upstream_of_or_within ISO (PMID:22206015) MGI PMID:22206015 NCBI chr11:68,413,101...68,548,408
Ensembl chr11:68,420,263...68,546,947 		JBrowse link
G POC1A POC1 centriolar protein A acts_upstream_of_or_within ISO (PMID:26496357) MGI PMID:26496357 NCBI chr20:37,592,080...37,659,783
Ensembl chr20:37,544,186...37,681,725 		JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA6 annexin A6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:58,091,186...58,140,102
Ensembl chr 4:58,091,251...58,139,372 		JBrowse link
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:19,032,376...19,103,382
Ensembl chr36:19,010,717...19,103,292 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26098911) Ensembl
MGI		 PMID:26098911 GO_REF:0000107 NCBI chr34:26,332,456...26,455,428 JBrowse link
G NPPC natriuretic peptide C involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:43,714,545...43,718,969
Ensembl chr25:43,717,939...43,718,996 		JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RARG retinoic acid receptor gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21420963) Ensembl
MGI		 PMID:21420963 GO_REF:0000107 NCBI chr23:13,886,869...13,946,480
Ensembl chr23:13,889,000...13,977,636 		JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MATN1 matrilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16877353) Ensembl
MGI		 PMID:16877353 GO_REF:0000107 NCBI chr 2:70,225,642...70,234,972 JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:19,032,376...19,103,382
Ensembl chr36:19,010,717...19,103,292 		JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:35,155,568...35,159,085
Ensembl chr11:35,156,430...35,158,942 		JBrowse link
G NPPC natriuretic peptide C involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:43,714,545...43,718,969
Ensembl chr25:43,717,939...43,718,996 		JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain ISO spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO (PMID:18467703)
(PMID:18191556)		 MGI PMID:18191556 PMID:18467703 NCBI chr12:32,763,782...32,847,456
Ensembl chr12:32,764,496...32,847,574 		JBrowse link
G COMP cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18467703)
(PMID:17588960)
(PMID:18191556)		 Ensembl
MGI		 PMID:17588960 PMID:18191556 PMID:18467703 GO_REF:0000107 NCBI chr20:44,306,813...44,314,575
Ensembl chr20:44,306,859...44,314,625 		JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509771) Ensembl
MGI		 PMID:15509771 GO_REF:0000107 NCBI chr17:22,340,469...22,364,994
Ensembl chr17:22,341,322...22,361,772 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26098911) Ensembl
MGI		 PMID:26098911 GO_REF:0000107 NCBI chr34:26,332,456...26,455,428 JBrowse link
G MMP13 matrix metallopeptidase 13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21444811) Ensembl
MGI		 PMID:21444811 GO_REF:0000107 NCBI chr 5:28,793,568...28,864,832
Ensembl chr 5:28,850,522...28,864,121 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,283,680...52,339,247
Ensembl chr11:52,321,590...52,339,249 		JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19389355) Ensembl
MGI		 PMID:19389355 GO_REF:0000107 NCBI chr 9:22,254,803...22,298,614
Ensembl chr 9:22,254,806...22,289,459 		JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19389355) Ensembl
MGI		 PMID:19389355 GO_REF:0000107 NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19389355) Ensembl
MGI		 PMID:19389355 GO_REF:0000107 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21420963) Ensembl
MGI		 PMID:21420963 GO_REF:0000107 NCBI chr23:13,886,869...13,946,480
Ensembl chr23:13,889,000...13,977,636 		JBrowse link
G THBS1 thrombospondin 1 acts_upstream_of_or_within ISO (PMID:18467703) MGI PMID:18467703 NCBI chr30:6,770,212...6,786,875
Ensembl chr30:6,769,470...6,784,915 		JBrowse link
G THBS3 thrombospondin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18467703) Ensembl
MGI		 PMID:18467703 GO_REF:0000107 NCBI chr 7:42,327,899...42,338,177
Ensembl chr 7:42,328,592...42,338,171 		JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11923874) Ensembl
MGI		 PMID:11923874 GO_REF:0000107 NCBI chr15:2,669,546...2,708,480
Ensembl chr15:2,670,326...2,709,160 		JBrowse link
mandibular condyle articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:23900597) RGD
MGI		 PMID:20097540 PMID:23900597 RGD:15039407 NCBI chr32:11,017,440...11,022,780 JBrowse link
negative regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTSK cathepsin K acts_upstream_of_or_within ISO (PMID:19834056) MGI PMID:19834056 NCBI chr17:59,928,725...59,938,293
Ensembl chr17:59,929,287...59,938,507 		JBrowse link
G FRZB frizzled related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18991062) Ensembl
MGI		 PMID:18991062 GO_REF:0000107 NCBI chr36:25,884,557...25,907,436
Ensembl chr36:25,884,557...25,907,369 		JBrowse link
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:19834056) MGI PMID:19834056 NCBI chr 3:91,517,225...91,534,593
Ensembl chr 3:91,522,035...91,534,593 		JBrowse link
G LEP leptin ISO RGD PMID:19876764 RGD:5128612 NCBI chr14:8,115,396...8,130,946
Ensembl chr14:8,116,122...8,131,395 		JBrowse link
G MIR21 microRNA mir-21 involved_in ISO (PMID:24577233) BHF-UCL PMID:24577233 NCBI chr 9:34,340,550...34,340,609
Ensembl chr 9:34,340,533...34,340,624 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr 9:22,254,803...22,298,614
Ensembl chr 9:22,254,806...22,289,459 		JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476 		JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:21780244) MGI PMID:21780244 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (PMID:19047045) MGI PMID:19047045 NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295 		JBrowse link
negative regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTHLH parathyroid hormone like hormone acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:90087) MGI
Ensembl		 PMID:90087 GO_REF:0000107 NCBI chr27:19,781,557...19,795,078
Ensembl chr27:19,781,557...19,795,078 		JBrowse link
G RFLNA refilin A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:5,501,223...5,509,118
Ensembl chr26:5,502,106...5,505,458 		JBrowse link
G RFLNB refilin B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24436304) Ensembl
MGI
TreeGrafter		 PMID:24436304 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:45,232,910...45,239,569
Ensembl chr 9:45,232,975...45,239,130 		JBrowse link
negative regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:73,887,959...74,188,909
Ensembl chr 4:73,887,924...74,001,984 		JBrowse link
G ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in ISO (PMID:22247065) BHF-UCL PMID:22247065 NCBI chr 3:58,182,316...58,223,194
Ensembl chr 3:58,188,004...58,226,185 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17481601) Ensembl
MGI		 PMID:17481601 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G CCN4 cellular communication network factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:29,648,720...29,683,822
Ensembl chr13:29,648,639...29,679,732 		JBrowse link
G CHADL chondroadherin like involved_in ISO (MGI:5617405|PMID:25451920) UniProt PMID:25451920 MGI:5617405 NCBI chr10:23,992,848...24,006,492
Ensembl chr10:23,953,912...24,003,162 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15866163)
(PMID:16818445)		 Ensembl
MGI		 PMID:15866163 PMID:16818445 GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:56,632,801...56,694,872
Ensembl chr10:56,579,899...56,787,187 		JBrowse link
G GDF5 growth differentiation factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17328886) Ensembl
MGI		 PMID:17328886 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16284117) Ensembl
MGI		 PMID:16284117 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:2,219,535...2,231,868
Ensembl chr30:2,222,898...2,225,418 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16284117) Ensembl
MGI		 PMID:16284117 GO_REF:0000107 NCBI chr37:25,616,942...25,622,989 JBrowse link
G LOC487079 homeobox protein Mohawk ISO RGD PMID:27370800 RGD:40924660 NCBI chr 2:5,898,155...5,964,577 JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11790802) Ensembl
MGI		 PMID:11790802 GO_REF:0000107 NCBI chr18:51,653,783...51,667,793
Ensembl chr18:51,659,098...51,667,433 		JBrowse link
G NKX3-2 NK3 homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:66,543,046...66,546,779
Ensembl chr 3:66,543,046...66,545,580 		JBrowse link
G PTH parathyroid hormone involved_in ISO PMID:11604398 CAFA PMID:11604398 RGD:12793028 NCBI chr21:36,417,062...36,419,967
Ensembl chr21:36,417,058...36,419,967 		JBrowse link
G PTHLH parathyroid hormone like hormone acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:90087)
(PMID:17328886)
(PMID:8895385)		 MGI
Ensembl		 PMID:90087 PMID:8895385 PMID:17328886 GO_REF:0000107 NCBI chr27:19,781,557...19,795,078
Ensembl chr27:19,781,557...19,795,078 		JBrowse link
G PTPN11 protein tyrosine phosphatase non-receptor type 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:9,989,218...10,072,245
Ensembl chr26:9,989,425...10,067,481 		JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in ISO (PMID:19756381) BHF-UCL PMID:19756381 NCBI chr29:1,154,132...1,156,653
Ensembl chr29:1,154,036...1,156,653 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:11371614) UniProt
MGI
Ensembl		 PMID:11371614 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:56,191,383...56,223,042
Ensembl chr11:56,161,772...56,218,594 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (PMID:16818445) MGI PMID:16818445 NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295 		JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:26972716) MGI PMID:26972716 NCBI chr32:11,017,440...11,022,780 JBrowse link
positive regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP1 bone morphogenetic protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3201241) MGI
Ensembl		 PMID:3201241 GO_REF:0000107 NCBI chr25:35,043,594...35,087,282
Ensembl chr25:35,020,751...35,087,545 		JBrowse link
G BMP10 bone morphogenetic protein 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:67,717,047...67,724,778
Ensembl chr10:67,717,980...67,724,739 		JBrowse link
G BMP2 bone morphogenetic protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3201241)
(PMID:10684250)		 MGI
Ensembl		 PMID:3201241 PMID:10684250 GO_REF:0000107 NCBI chr24:15,199,667...15,211,509
Ensembl chr24:15,200,291...15,212,217 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3201241) MGI
Ensembl		 PMID:3201241 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G CCN1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:9441684) MGI PMID:9441684 NCBI chr 6:62,443,285...62,446,246
Ensembl chr 6:62,443,675...62,445,994 		JBrowse link
G GDF2 growth differentiation factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:34,996,767...35,001,094
Ensembl chr 4:34,997,579...35,001,203 		JBrowse link
G LOC491316 midkine involved_in ISO (MGI:5693192|PMID:25551381) UniProt PMID:25551381 MGI:5693192 NCBI chr 9:55,100,491...55,101,081 JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299) UniProt PMID:10477299 MGI:1343990 NCBI chr13:37,701,781...37,704,949
Ensembl chr13:37,703,232...37,704,657 		JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19251704) Ensembl
MGI		 PMID:19251704 GO_REF:0000107 NCBI chr15:44,093,491...44,171,177
Ensembl chr15:44,095,497...44,170,098 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:22,857,661...23,855,709
Ensembl chr27:23,452,985...23,851,380 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19047045) Ensembl
MGI		 PMID:19047045 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18991062) Ensembl
MGI		 PMID:18991062 GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628 		JBrowse link
positive regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766 		JBrowse link
positive regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP6 bone morphogenetic protein 6 ISO RGD PMID:23077084 RGD:7242190 NCBI chr35:7,780,763...7,833,095
Ensembl chr35:7,804,231...7,831,845 		JBrowse link
G FGF18 fibroblast growth factor 18 acts_upstream_of_or_within ISO (PMID:15781473) MGI PMID:15781473 NCBI chr 4:40,714,891...40,748,892
Ensembl chr 4:40,715,060...40,748,518 		JBrowse link
G GDF5 growth differentiation factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18363966)
(PMID:9885252)		 Ensembl
MGI		 PMID:9885252 PMID:18363966 GO_REF:0000107 NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928 		JBrowse link
G GDF6 growth differentiation factor 6 involved_in ISO (PMID:26643732) UniProt PMID:26643732 NCBI chr29:40,676,851...40,694,174
Ensembl chr29:40,676,851...40,694,174
Ensembl chr29:40,676,851...40,694,174 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17328886) Ensembl
MGI		 PMID:17328886 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766 		JBrowse link
G LOXL2 lysyl oxidase like 2 involved_in ISO (MGI:5320274|PMID:21071451) UniProt PMID:21071451 MGI:5320274 NCBI chr25:34,095,858...34,186,775
Ensembl chr25:34,126,335...34,185,969 		JBrowse link
G MUSTN1 musculoskeletal, embryonic nuclear protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19410023) Ensembl
MGI		 PMID:19410023 GO_REF:0000107
G PKDCC protein kinase domain containing, cytoplasmic involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:33,659,352...33,669,237
Ensembl chr17:33,659,272...33,668,892 		JBrowse link
G POR cytochrome p450 oxidoreductase ISO RGD PMID:19264869 RGD:2316785 NCBI chr 6:7,247,780...7,316,282
Ensembl chr 6:7,263,574...7,316,297 		JBrowse link
G PRKG2 protein kinase cGMP-dependent 2 ISO RGD PMID:15466490 RGD:150429792 NCBI chr32:5,266,435...5,365,396
Ensembl chr32:5,266,442...5,365,396 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit ISO RGD PMID:17884819 RGD:2298851 NCBI chr18:51,550,003...51,558,861
Ensembl chr18:51,550,040...51,558,875 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10072783) Ensembl
MGI		 PMID:10072783 GO_REF:0000107 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785 		JBrowse link
G SMAD3 SMAD family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr27:22,857,661...23,855,709
Ensembl chr27:23,452,985...23,851,380 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS
IEA
IBA		 UniProt
TreeGrafter
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G THRB thyroid hormone receptor beta ISO RGD PMID:15647824 RGD:1601663 NCBI chr23:19,278,650...19,648,547
Ensembl chr23:19,277,493...19,660,283 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628 		JBrowse link
G ZNF219 zinc finger protein 219 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:18,178,861...18,186,650
Ensembl chr15:18,180,901...18,192,773 		JBrowse link
positive regulation of chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMAD7 SMAD family member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:79,706,485...79,734,673
Ensembl chr 7:79,706,705...79,734,749 		JBrowse link
regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 acts_upstream_of_or_within ISO (PMID:20501701) MGI PMID:20501701 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20501701) Ensembl
MGI		 PMID:20501701 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G KAT2A lysine acetyltransferase 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:20,778,434...20,787,057
Ensembl chr 9:20,779,042...20,787,067 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027) UniProt PMID:18802027 MGI:4413438 NCBI chr13:37,701,781...37,704,949
Ensembl chr13:37,703,232...37,704,657 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24505141) Ensembl
MGI		 PMID:24505141 GO_REF:0000107 NCBI chr 5:81,089,657...81,172,173
Ensembl chr 5:81,142,888...81,172,189 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19623616) Ensembl
MGI		 PMID:19623616 GO_REF:0000107 NCBI chr 9:14,559,476...14,588,950
Ensembl chr 9:14,559,388...14,588,530 		JBrowse link
G RFLNA refilin A involved_in IEA InterPro GO_REF:0000002 NCBI chr26:5,501,223...5,509,118
Ensembl chr26:5,502,106...5,505,458 		JBrowse link
G RFLNB refilin B involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:45,232,910...45,239,569
Ensembl chr 9:45,232,975...45,239,130 		JBrowse link
regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18597638) Ensembl
MGI		 PMID:18597638 GO_REF:0000107 NCBI chr 1:25,508,082...25,511,058
Ensembl chr 1:25,507,662...25,510,145 		JBrowse link
G GLG1 golgi glycoprotein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20530870) Ensembl
MGI		 PMID:20530870 GO_REF:0000107 NCBI chr 5:76,020,743...76,171,477
Ensembl chr 5:76,020,084...76,167,007 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278) Ensembl
MGI		 PMID:22916278 GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766 		JBrowse link
G LNPK lunapark, ER junction formation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278) Ensembl
MGI		 PMID:22916278 GO_REF:0000107 NCBI chr36:19,731,523...19,809,349
Ensembl chr36:19,732,276...19,808,769 		JBrowse link
G LOC491316 midkine involved_in ISO (MGI:5693192|PMID:25551381) UniProt PMID:25551381 MGI:5693192 NCBI chr 9:55,100,491...55,101,081 JBrowse link
G MAF MAF bZIP transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14512017) Ensembl
MGI		 PMID:14512017 GO_REF:0000107 NCBI chr 5:71,965,291...71,982,903
Ensembl chr 5:71,965,500...71,981,735 		JBrowse link
G MBOAT2 membrane bound O-acyltransferase domain containing 2 involved_in ISO (MGI:6467698|PMID:29196633) UniProt PMID:29196633 MGI:6467698 NCBI chr17:6,090,746...6,217,139
Ensembl chr17:6,094,900...6,213,142 		JBrowse link
G PTHLH parathyroid hormone like hormone involved_in IBA GO_Central GO_REF:0000033 NCBI chr27:19,781,557...19,795,078
Ensembl chr27:19,781,557...19,795,078 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537395) Ensembl
MGI		 PMID:16537395 GO_REF:0000107 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509 		JBrowse link
G TRPS1 transcriptional repressor GATA binding 1 involved_in ISO (MGI:3848565|PMID:19389374) UniProt PMID:19389374 MGI:3848565 NCBI chr13:15,017,180...15,273,177
Ensembl chr13:15,022,652...15,273,666 		JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CARM1 coactivator associated arginine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:19725955) MGI PMID:19725955 NCBI chr20:50,328,466...50,371,845
Ensembl chr20:50,331,030...50,348,195 		JBrowse link
G POR cytochrome p450 oxidoreductase ISO positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr 6:7,247,780...7,316,282
Ensembl chr 6:7,263,574...7,316,297 		JBrowse link
trachea cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9376317) Ensembl
MGI		 PMID:9376317 GO_REF:0000107 NCBI chr 9:22,254,803...22,298,614
Ensembl chr 9:22,254,806...22,289,459 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8388780) Ensembl
MGI		 PMID:8388780 GO_REF:0000107 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24218621) Ensembl
MGI		 PMID:24218621 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24218621) Ensembl
MGI		 PMID:24218621 GO_REF:0000107 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533 		JBrowse link
trachea cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441679) Ensembl
MGI		 PMID:9441679 GO_REF:0000107 NCBI chr14:40,315,409...40,319,001
Ensembl chr14:40,315,639...40,317,768 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18256198) MGI PMID:18256198 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437 		JBrowse link
G RSPO2 R-spondin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18256198) Ensembl
MGI		 PMID:18256198 GO_REF:0000107 NCBI chr13:8,610,227...8,755,727
Ensembl chr13:8,611,952...8,754,859 		JBrowse link
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (PMID:18367557) MGI PMID:18367557 NCBI chr10:20,160,916...20,208,786
Ensembl chr10:20,160,206...20,243,160 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure development 6433
        animal organ development 3575
          cartilage development 237
            articular cartilage development + 8
            bronchus cartilage development + 2
            cartilage condensation + 23
            cartilage development involved in endochondral bone morphogenesis + 42
            cartilage morphogenesis + 12
            chondroblast differentiation 6
            chondrocyte differentiation + 133
            negative regulation of cartilage development + 34
            positive regulation of cartilage development + 32
            regulation of cartilage development + 75
            trachea cartilage development + 8
Path 2
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure development 6433
        multicellular organism development 5182
          system development 4509
            skeletal system development 572
              cartilage development 237
                articular cartilage development + 8
                bronchus cartilage development + 2
                cartilage condensation + 23
                cartilage development involved in endochondral bone morphogenesis + 42
                cartilage morphogenesis + 12
                chondroblast differentiation 6
                chondrocyte differentiation + 133
                negative regulation of cartilage development + 34
                positive regulation of cartilage development + 32
                regulation of cartilage development + 75
                trachea cartilage development + 8
paths to the root