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ONTOLOGY REPORT - ANNOTATIONS


Term:cartilage development
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Accession:GO:0051216 term browser browse the term
Definition:The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
Synonyms:exact_synonym: cartilage biogenesis;   cartilage biosynthesis;   cartilage element development;   cartilage formation;   cartilage organ development;   chondrogenesis
 xref: Wikipedia:Chondrogenesis



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cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856097 (MGI:83811|PMID:8895222) RGD PMID:8895222 MGI:83811 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672 (MGI:5474015|PMID:19195025) RGD PMID:19195025 MGI:5474015 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086
JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (MGI:5474015|PMID:19195025) RGD PMID:19195025 MGI:5474015 NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993
JBrowse link
G Bmp3 bone morphogenetic protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:10,712,489...10,737,153
Ensembl chr14:10,712,489...10,737,153
JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:26,318,121...26,469,034
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158390|MGI:3577961 (MGI:3576405|PMID:15492776) RGD PMID:15492776 MGI:3576405 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Cd44 CD44 molecule (Indian blood group) involved_in ISO
IEA
(PMID:11944887)
GO_REF:0000107
RGD
Ensembl
PMID:11944887 GO_REF:0000107 NCBI chr 3:89,155,850...89,244,615
Ensembl chr 3:89,157,058...89,244,620
JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111
JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO MGI:5007063 (MGI:5316547|PMID:22280990) RGD PMID:22280990 MGI:5316547 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601
JBrowse link
G Cnmd chondromodulin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:55,041,548...55,066,297
Ensembl chr15:55,041,561...55,066,297
JBrowse link
G Col10a1 collagen type X alpha 1 chain IMP RGD PMID:10853827 RGD:704421 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (MGI:53676|PMID:4100752), (MGI:53732|PMID:4110409), (MGI:54324|PMID:886247), (MGI:70833|PMID:7859283) RGD PMID:886247 PMID:4100752 PMID:4110409 PMID:7859283 MGI:53676 MGI:53732 MGI:54324 MGI:60257 MGI:70833 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in ISO
IBA
(PMID:9188673)
PMID:21873635
RGD PMID:9188673 PMID:21873635 RGD:13792537 NCBI chr20:4,786,929...4,816,598
Ensembl chr20:4,786,929...4,815,985
JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEP
ISO
MGI:1857275|MGI:2152978 (MGI:1315157|PMID:9832566), (MGI:1334159|PMID:10100048), (MGI:3618042|PMID:11171689), (MGI:3697977|PMID:11680679), (MGI:55057|PMID:7276808), (MGI:77563|PMID:7590256), (MGI:86483|PMID:9061443), (MGI:892501|PMID:9165353) RGD PMID:7276808 PMID:7590256 PMID:9061443 PMID:9165353 PMID:9832566 More... MGI:1315157 MGI:1334159 MGI:3618042 MGI:3697977 MGI:55057 MGI:77563 MGI:86483 MGI:892501, RGD:70694 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1857431 (MGI:6405577|PMID:31655293) RGD PMID:31655293 MGI:6405577 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469 (MGI:3697977|PMID:11680679), (MGI:3807836|PMID:18191556) RGD PMID:11680679 PMID:18191556 MGI:3697977 MGI:3807836 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213
JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO MGI:3758741|MGI:5550566|MGI:88465 (MGI:3723532|PMID:17588960), (MGI:3807836|PMID:18191556), (MGI:5510903|PMID:23951406) RGD PMID:17588960 PMID:18191556 PMID:23951406 MGI:3723532 MGI:3807836 MGI:5510903 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Cr2 complement C3d receptor 2 acts_upstream_of_or_within ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:106,678,579...106,716,595
Ensembl chr13:106,685,413...106,716,235
JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:4438315|PMID:19767744)
UniProt
RGD
PMID:19767744 GO_REF:0000024 MGI:4438315 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763
JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO MGI:4868209 (MGI:4849906|PMID:20812917) RGD PMID:20812917 MGI:4849906 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:21,235,784...21,330,319
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:28263186)
(MGI:5908314|PMID:28263186)
RGD PMID:28263186 MGI:5908314 NCBI chr 3:117,861,916...117,882,680
Ensembl chr 3:117,861,653...117,882,680
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (MGI:4849577|PMID:21098571) RGD PMID:21098571 MGI:4849577 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857828 (MGI:76977|PMID:7590232)
Ensembl
RGD
PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 3:56,371,347...56,373,230
Ensembl chr 3:56,370,483...56,373,597
JBrowse link
G Dspp dentin sialophosphoprotein IEP femoral head RGD PMID:20679519 RGD:12914771 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672
JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO MGI:1857637 (MGI:65725|PMID:8152482) RGD PMID:8152482 MGI:65725 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:2385534|MGI:6402836 (MGI:3630246|PMID:15625282), (MGI:5616480|PMID:25260930), (MGI:6101307|PMID:24770645) RGD PMID:15625282 PMID:24770645 PMID:25260930 MGI:3630246 MGI:5616480 MGI:6101307 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Esrra estrogen related receptor, alpha IMP RGD PMID:17170100 RGD:1625657 NCBI chr 1:204,104,100...204,114,182
Ensembl chr 1:204,104,101...204,114,268
JBrowse link
G Evc EvC ciliary complex subunit 1 IEP RGD PMID:15278943 RGD:1598913 NCBI chr14:73,456,181...73,498,955
Ensembl chr14:73,456,222...73,498,099
JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO MGI:1857833 (MGI:1278141|PMID:9733575) RGD PMID:9733575 MGI:1278141 NCBI chr 1:244,426,892...244,514,188
Ensembl chr 1:244,426,896...244,514,163
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (MGI:3584218|PMID:15781473) RGD PMID:15781473 MGI:3584218 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO MGI:3043361 (MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:3619837 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262
JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:5285816|PMID:17093926)
(PMID:17093926)
UniProt
RGD
PMID:17093926 GO_REF:0000024 MGI:5285816 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2386649|MGI:2386679 (MGI:2153426|PMID:11691837)
Ensembl
RGD
PMID:11691837 GO_REF:0000107 MGI:2153426 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO MGI:96184|MGI:96207 (MGI:1195045|PMID:9441667) RGD PMID:9441667 MGI:1195045 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218
JBrowse link
G Hoxb3 homeo box B3 acts_upstream_of_or_within ISO MGI:96175|MGI:96207 (MGI:1195045|PMID:9441667) RGD PMID:9441667 MGI:1195045 NCBI chr10:81,258,739...81,314,134
Ensembl chr10:81,299,357...81,313,107
JBrowse link
G Hoxc4 homeo box C4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857570 (MGI:79121|PMID:8626021)
Ensembl
RGD
PMID:8626021 GO_REF:0000107 MGI:79121 NCBI chr 7:134,135,279...134,173,133
Ensembl chr 7:134,170,591...134,173,133
JBrowse link
G Hoxd3 homeo box D3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96175|MGI:96184 (MGI:1195045|PMID:9441667)
Ensembl
RGD
PMID:9441667 GO_REF:0000107 MGI:1195045 NCBI chr 3:59,638,708...59,650,282
Ensembl chr 3:59,638,708...59,650,282
JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:11944887)
UniProt
Ensembl
RGD
PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,250,654...108,254,526
Ensembl chr 8:108,250,667...108,260,210
JBrowse link
G Hyal2 hyaluronidase 2 involved_in ISO
IEA
ISS
(PMID:11944887)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850
JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISO
IEA
(PMID:11944887)
GO_REF:0000107
RGD
Ensembl
PMID:11944887 GO_REF:0000107 NCBI chr 8:108,254,385...108,260,020
Ensembl chr 8:108,250,667...108,260,647
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
ISO (PMID:17889828)
MGI:1934258 (MGI:3695832|PMID:17191253)
RGD PMID:17191253 PMID:17889828 MGI:3695832 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Il17f interleukin 17F involved_in IEA
ISO
GO_REF:0000107
(PMID:11574464)
Ensembl
RGD
PMID:11574464 GO_REF:0000107 NCBI chr 9:23,190,094...23,201,482
Ensembl chr 9:23,190,100...23,201,482
JBrowse link
G Itgb8 integrin subunit beta 8 involved_in ISO (PMID:24312400) RGD PMID:24312400 NCBI chr 6:140,124,997...140,208,254
Ensembl chr 6:140,127,203...140,208,476
JBrowse link
G Lum lumican IEP RGD PMID:19746167 RGD:2317685 NCBI chr 7:32,358,990...32,365,794
Ensembl chr 7:32,358,614...32,365,793
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO (MGI:3758399|PMID:17644814) RGD PMID:17644814 MGI:3758399 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863
JBrowse link
G Matn3 matrilin 3 acts_upstream_of_or_within ISO MGI:3759029 (MGI:5510903|PMID:23951406) RGD PMID:23951406 MGI:5510903 NCBI chr 6:31,748,383...31,768,101
Ensembl chr 6:31,748,474...31,768,101
JBrowse link
G Mgp matrix Gla protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:169,766,290...169,769,612
Ensembl chr 4:169,766,279...169,769,667
JBrowse link
G Mir140 microRNA 140 acts_upstream_of_or_within ISO MGI:4461000 (MGI:4454342|PMID:20466812) RGD PMID:20466812 MGI:4454342 NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675
JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3526444 (MGI:5474015|PMID:19195025) RGD PMID:19195025 MGI:5474015 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162
JBrowse link
G Mmp13 matrix metallopeptidase 13 acts_upstream_of_or_within ISO MGI:3521852 (MGI:3513736|PMID:15563592) RGD PMID:15563592 MGI:3513736 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239
JBrowse link
G Msx1 msh homeobox 1 IMP RGD PMID:10332146 RGD:1600462 NCBI chr14:72,961,170...72,964,970
Ensembl chr14:72,961,148...72,964,966
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IMP
ISO
MGI:1926381 (MGI:1355063|PMID:10742104), (MGI:2151298|PMID:11668602) RGD PMID:10742104 PMID:11668602 PMID:10332146 MGI:1355063 MGI:2151298, RGD:1600462 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
G Nog noggin involved_in IEA GO_REF:0000104
GO_REF:0000043
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO MGI:1857831 (MGI:79520|PMID:8631261) RGD PMID:8631261 MGI:79520 NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979
JBrowse link
G Pitx1 paired-like homeodomain 1 acts_upstream_of_or_within ISO MGI:1857659 (MGI:1333095|PMID:10101115) RGD PMID:10101115 MGI:1333095 NCBI chr17:8,794,134...8,800,292
Ensembl chr17:8,794,134...8,800,291
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) RGD PMID:11891195 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO MGI:1857640|MGI:98218 (MGI:1321048|PMID:9876178), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9876178 MGI:1321048 MGI:73363 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (MGI:1321048|PMID:9876178) RGD PMID:9876178 MGI:1321048 NCBI chr 3:14,132,511...14,168,535
Ensembl chr 3:14,094,004...14,168,535
JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO MGI:3692768 (MGI:3692344|PMID:16751105) RGD PMID:16751105 MGI:3692344 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:3810257 (MGI:3806414|PMID:18729207) RGD PMID:18729207 MGI:3806414 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1328787|MGI:1859993 (MGI:3840027|PMID:19224984)
Ensembl
RGD
PMID:19224984 GO_REF:0000107 MGI:3840027 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad5 SMAD family member 5 acts_upstream_of_or_within ISO MGI:109452|MGI:1859993 (MGI:3840027|PMID:19224984) RGD PMID:19224984 MGI:3840027 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
JBrowse link
G Smad9 SMAD family member 9 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:109452|MGI:1328787 (MGI:3840027|PMID:19224984)
GO_REF:0000107
RGD
Ensembl
PMID:19224984 GO_REF:0000107 MGI:3840027 NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO MGI:3575405 (MGI:3715574|PMID:17591962), (MGI:5805317|PMID:27325675) RGD PMID:17591962 PMID:27325675 MGI:3715574 MGI:5805317 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
G Snorc secondary ossification center associated regulator of chondrocyte maturation involved_in ISO (MGI:6103145|PMID:28323137) RGD PMID:28323137 MGI:6103145 NCBI chr 9:88,140,419...88,145,891
Ensembl chr 9:88,140,419...88,145,891
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:5780653|PMID:26150426), (MGI:6414706|PMID:15529345)
MGI:98368 (MGI:3525903|PMID:15634692)
UniProt
RGD
PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 MGI:3525903 MGI:5780653 MGI:6414706 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:5780653|PMID:26150426), (MGI:6414706|PMID:15529345)
MGI:98367 (MGI:3525903|PMID:15634692)
UniProt
RGD
PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 MGI:3525903 MGI:5780653 MGI:6414706 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
TAS
ISO
NAS
ISS
IEP
(MGI:5908314|PMID:28263186), (MGI:6414706|PMID:15529345)
MGI:2158693 (MGI:2135696|PMID:11371614)
PMID:19828133
GO_REF:0000024
RGD
UniProt
PMID:11371614 PMID:15529345 PMID:28263186 PMID:11514554 PMID:19828133 More... GO_REF:0000024 MGI:2135696 MGI:5908314 MGI:6414706, RGD:70568, RGD:8553796, RGD:1599098 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Sulf1 sulfatase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5306560|PMID:20479257)
UniProt
RGD
PMID:20479257 GO_REF:0000024 MGI:5306560 NCBI chr 5:6,362,896...6,526,174
Ensembl chr 5:6,362,911...6,525,584
JBrowse link
G Sulf2 sulfatase 2 involved_in ISO (MGI:5306560|PMID:20479257) RGD PMID:20479257 MGI:5306560 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415
JBrowse link
G Tapt1 transmembrane anterior posterior transformation 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:66,873,467...66,919,737
Ensembl chr14:66,873,459...66,919,741
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO (MGI:3796269|PMID:18498113) RGD PMID:18498113 MGI:3796269 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 IEP RGD PMID:16208432 RGD:8694091 NCBI chr  X:1,212,969...1,217,714
Ensembl chr  X:1,212,972...1,217,664
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 involved_in ISO (PMID:30728324) RGD PMID:30728324 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781
JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:3471366 RGD:2317423 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (MGI:4821073|PMID:16826533) RGD PMID:16826533 MGI:4821073 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISS
ISO
GO_REF:0000024
(PMID:21547890)
UniProt
RGD
PMID:21547890 GO_REF:0000024 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857799 (MGI:1195626|PMID:9389660)
Ensembl
RGD
PMID:9389660 GO_REF:0000107 MGI:1195626 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214
JBrowse link
articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bgn biglycan acts_upstream_of_or_within ISO MGI:107942 (MGI:5644410|PMID:19932218) RGD PMID:19932218 MGI:5644410 NCBI chr  X:151,197,296...151,209,458
Ensembl chr  X:151,197,273...151,209,461
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079|MGI:3785162 (MGI:5462123|PMID:22927960), (MGI:5661140|PMID:22359666), (MGI:6103493|PMID:28402956) RGD PMID:22359666 PMID:22927960 PMID:28402956 MGI:5462123 MGI:5661140 MGI:6103493 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Epyc epiphycan acts_upstream_of_or_within ISO MGI:88158 (MGI:5644410|PMID:19932218) RGD PMID:19932218 MGI:5644410 NCBI chr 7:32,436,620...32,474,326
Ensembl chr 7:32,436,620...32,474,135
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (MGI:5817320|PMID:26098911) RGD PMID:26098911 MGI:5817320 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 acts_upstream_of_or_within ISO MGI:3665440|MGI:6363078|MGI:6363079 (MGI:6277636|PMID:30659184) RGD PMID:30659184 MGI:6277636 NCBI chr 2:174,856,339...174,868,922
Ensembl chr 2:174,856,397...174,868,919
JBrowse link
bronchus cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2429649 (MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:5524169 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206 (MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:5524169 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856465 (MGI:2664273|PMID:3070812)
Ensembl
RGD
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 1:132,981,034...133,044,416
Ensembl chr 1:132,981,582...133,043,627
JBrowse link
G Barx2 BARX homeobox 2 acts_upstream_of_or_within ISO (MGI:3578585|PMID:15800003) RGD PMID:15800003 MGI:3578585 NCBI chr 8:30,251,132...30,319,105
Ensembl chr 8:30,251,132...30,319,013
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:2158498 (MGI:1351297|PMID:10631181) RGD PMID:10631181 MGI:1351297 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (MGI:3050271|PMID:15305294) RGD PMID:15305294 MGI:3050271 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734
JBrowse link
G Chad chondroadherin IEP RGD PMID:9461555 RGD:69806 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:79,511,931...79,515,940
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (MGI:2664273|PMID:3070812) RGD PMID:3070812 MGI:2664273 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857275 (MGI:2664273|PMID:3070812)
Ensembl
RGD
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO MGI:98726 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466
JBrowse link
G Fgf6 fibroblast growth factor 6 acts_upstream_of_or_within ISO MGI:98726 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 4:159,854,913...159,863,447
Ensembl chr 4:159,854,913...159,863,447
JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO
GO_REF:0000107
(MGI:5487758|PMID:17202865)
Ensembl
RGD
PMID:17202865 GO_REF:0000107 MGI:5487758 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3790402|PMID:17360777)
Ensembl
RGD
PMID:17360777 GO_REF:0000107 MGI:3790402 NCBI chr 6:35,717,764...35,723,590
Ensembl chr 6:35,717,764...35,723,590
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857219 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177
JBrowse link
G Otor otoraplin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1928405|PMID:10998416)
RGD PMID:10998416 PMID:21873635 MGI:1928405, RGD:13792537 NCBI chr 3:130,415,339...130,418,601
Ensembl chr 3:130,415,339...130,418,601
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:2152589 (MGI:2152028|PMID:11593033) RGD PMID:11593033 MGI:2152028 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (MGI:3037488|PMID:14745966) RGD PMID:14745966 MGI:3037488 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2158693|MGI:2385468 (MGI:2159578|PMID:10319868), (MGI:2389523|PMID:12414734)
UniProt
RGD
PMID:10319868 PMID:12414734 GO_REF:0000024 MGI:2159578 MGI:2389523 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Sulf1 sulfatase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:6,362,896...6,526,174
Ensembl chr 5:6,362,911...6,525,584
JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO MGI:95518|MGI:95520 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Thra thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1860442 (MGI:894529|PMID:9250685)
Ensembl
RGD
PMID:9250685 GO_REF:0000107 MGI:894529 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
JBrowse link
G Uncx UNC homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1859373|MGI:1928812 (MGI:1855901|PMID:10804169), (MGI:1855902|PMID:10804168)
Ensembl
RGD
PMID:10804168 PMID:10804169 GO_REF:0000107 MGI:1855901 MGI:1855902 NCBI chr12:15,092,779...15,097,300
Ensembl chr12:15,092,784...15,097,300
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) RGD PMID:17202865 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO MGI:1857139 (MGI:3656462|PMID:15622513) RGD PMID:15622513 MGI:3656462 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO MGI:3769585 (MGI:3769669|PMID:18248096) RGD PMID:18248096 MGI:3769669 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in
IEP
ISO
IEA
mandibular condylar cartilage
MGI:1857275|MGI:2152978 (MGI:3697977|PMID:11680679), (MGI:84914|PMID:8989518), (MGI:85592|PMID:9022054)
GO_REF:0000107
RGD
Ensembl
PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 GO_REF:0000107 MGI:3697977 MGI:84914 MGI:85592, RGD:8661659 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:4946896|PMID:21185280), (MGI:5528913|PMID:23958822) RGD PMID:21185280 PMID:23958822 MGI:4946896 MGI:5528913 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Ghr growth hormone receptor IEP RGD PMID:15749813 RGD:2307373 NCBI chr 2:52,541,452...52,804,960
Ensembl chr 2:52,542,594...52,804,735
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232
JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 3:59,584,840...59,587,257 JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (MGI:1930356|PMID:10545953) RGD PMID:10545953 MGI:1930356 NCBI chr 5:149,677,437...149,778,594 JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3628798 (MGI:3621617|PMID:16537395)
GO_REF:0000107
RGD
Ensembl
PMID:16537395 GO_REF:0000107 MGI:3621617 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO MGI:5317918 (MGI:5316542|PMID:22318228) RGD PMID:22318228 MGI:5316542 NCBI chr 8:46,312,253...46,522,444
Ensembl chr 8:46,311,989...46,522,444
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO (PMID:26249260) RGD PMID:26249260 NCBI chr12:41,938,533...41,977,517
Ensembl chr12:41,938,560...41,977,517
JBrowse link
cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO MGI:103580 (MGI:3765375|PMID:17764670) RGD PMID:17764670 MGI:3765375 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103577 (MGI:3765375|PMID:17764670)
Ensembl
RGD
PMID:17764670 GO_REF:0000107 MGI:3765375 NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (MGI:1195049|PMID:9441679) RGD PMID:9441679 MGI:1195049 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234
JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (MGI:3714538|PMID:17420000) RGD PMID:17420000 MGI:3714538 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766 (MGI:3608570|PMID:12489152) RGD PMID:12489152 MGI:3608570 NCBI chr14:72,961,170...72,964,970
Ensembl chr14:72,961,148...72,964,966
JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:1096393 (MGI:3709678|PMID:17376812) RGD PMID:17376812 MGI:3709678 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
JBrowse link
G Snai2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:98330 (MGI:3709678|PMID:17376812) RGD PMID:17376812 MGI:3709678 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
chondroblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IEP RGD PMID:20001227 RGD:2315747 NCBI chr 1:132,981,034...133,044,416
Ensembl chr 1:132,981,582...133,043,627
JBrowse link
G Ccn1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:1195020|PMID:9441684)
Ensembl
RGD
PMID:9441684 GO_REF:0000107 MGI:1195020 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:17167778) RGD PMID:17167778 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Fgf4 fibroblast growth factor 4 involved_in ISO (PMID:17167778) RGD PMID:17167778 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466
JBrowse link
G Gdf5 growth differentiation factor 5 involved_in ISO (PMID:25092592) RGD PMID:25092592 NCBI chr 3:144,454,306...144,458,757
Ensembl chr 3:144,454,338...144,458,612
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO (MGI:1353721|PMID:10684250) RGD PMID:10684250 MGI:1353721 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856465 (MGI:1270958|PMID:9664687)
Ensembl
RGD
PMID:9664687 GO_REF:0000107 MGI:1270958 NCBI chr 1:132,981,034...133,044,416
Ensembl chr 1:132,981,582...133,043,627
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (PMID:9442116) RGD PMID:9442116 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO MGI:3806990 (MGI:3799383|PMID:18539921) RGD PMID:18539921 MGI:3799383 NCBI chr 5:17,775,684...17,802,570
Ensembl chr 5:17,772,608...17,802,570
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111
JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO MGI:5007063 (MGI:5316547|PMID:22280990) RGD PMID:22280990 MGI:5316547 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (MGI:53676|PMID:4100752) RGD PMID:4100752 MGI:53676 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3758741|MGI:5550566 (MGI:3723532|PMID:17588960), (MGI:5550565|PMID:22006726)
Ensembl
RGD
PMID:17588960 PMID:22006726 GO_REF:0000107 MGI:3723532 MGI:5550565 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Ecm1 extracellular matrix protein 1 acts_upstream_of_or_within ISO (MGI:4452294|PMID:20138147) RGD PMID:20138147 MGI:4452294 NCBI chr 2:183,287,491...183,292,729
Ensembl chr 2:183,287,322...183,292,671
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO MGI:2183829 (MGI:2670283|PMID:12865332) RGD PMID:12865332 MGI:2670283 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911
JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2178751 (MGI:3703411|PMID:17014841)
Ensembl
RGD
PMID:17014841 GO_REF:0000107 MGI:3703411 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO MGI:5007248 (MGI:5008683|PMID:21606205) RGD PMID:21606205 MGI:5008683 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972
JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1926381 (MGI:1355063|PMID:10742104)
Ensembl
RGD
PMID:10742104 GO_REF:0000107 MGI:1355063 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176466 (MGI:1334093|PMID:10213384)
Ensembl
RGD
PMID:10213384 GO_REF:0000107 MGI:1334093 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:3810257 (MGI:3806414|PMID:18729207) RGD PMID:18729207 MGI:3806414 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3605739 (MGI:3714677|PMID:17481601)
GO_REF:0000107
RGD
Ensembl
PMID:17481601 GO_REF:0000107 MGI:3714677 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO MGI:3575405 (MGI:3715574|PMID:17591962), (MGI:5582670|PMID:24505141) RGD PMID:17591962 PMID:24505141 MGI:3715574 MGI:5582670 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:3784676|PMID:18415932) RGD PMID:18415932 MGI:3784676 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Sulf1 sulfatase 1 involved_in IEA
ISO
ISS
GO_REF:0000104
(MGI:5306560|PMID:20479257)
GO_REF:0000024
UniProt
RGD
PMID:20479257 GO_REF:0000024 GO_REF:0000104 MGI:5306560 NCBI chr 5:6,362,896...6,526,174
Ensembl chr 5:6,362,911...6,525,584
JBrowse link
G Sulf2 sulfatase 2 involved_in ISO (MGI:5306560|PMID:20479257) RGD PMID:20479257 MGI:5306560 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415
JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serpin family H member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176070|MGI:5505265 (MGI:5494537|PMID:22492985)
Ensembl
RGD
PMID:22492985 GO_REF:0000107 MGI:5494537 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856877 (MGI:5293259|PMID:21788370)
Ensembl
RGD
PMID:21788370 GO_REF:0000107 MGI:5293259 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO MGI:1347346 (MGI:6193362|PMID:29618652) RGD PMID:29618652 MGI:6193362 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629
JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO MGI:2146046 (MGI:6193362|PMID:29618652) RGD PMID:29618652 MGI:6193362 NCBI chr 8:90,704,727...90,744,331
Ensembl chr 8:90,704,727...90,744,328
JBrowse link
G Arid5a AT-rich interaction domain 5A acts_upstream_of_or_within ISO (MGI:5317270|PMID:21346191) RGD PMID:21346191 MGI:5317270 NCBI chr 9:38,534,612...38,549,467
Ensembl chr 9:38,534,590...38,547,597
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:16194878)
Ensembl
RGD
PMID:16194878 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4418577|PMID:20059955)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20059955 GO_REF:0000024 GO_REF:0000107 MGI:4418577 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (MGI:5522580|PMID:24098149) RGD PMID:24098149 MGI:5522580 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within
involved_in
ISO MGI:1927616|MGI:95688 (MGI:3819026|PMID:18363966)
(MGI:5522580|PMID:24098149)
RGD PMID:18363966 PMID:24098149 MGI:3819026 MGI:5522580 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Ccn3 cellular communication network factor 3 involved_in ISO
ISS
IMP
(PMID:21871891)
GO_REF:0000024
RGD
UniProt
PMID:21871891 PMID:21871891 GO_REF:0000024, RGD:10400852 NCBI chr 7:86,094,000...86,101,022
Ensembl chr 7:86,094,000...86,101,019
JBrowse link
G Col11a2 collagen type XI alpha 2 chain acts_upstream_of_or_within ISO MGI:2154689 (MGI:2151300|PMID:11668593) RGD PMID:11668593 MGI:2151300 NCBI chr20:4,786,929...4,816,598
Ensembl chr20:4,786,929...4,815,985
JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in
IEP
ISO
IEA
MGI:2152978 (MGI:3697977|PMID:11680679), (MGI:77563|PMID:7590256), (PMID:9119111)
GO_REF:0000107
RGD
Ensembl
PMID:7590256 PMID:9119111 PMID:11680679 PMID:21627568 GO_REF:0000107 MGI:3697977 MGI:77563, RGD:5134342 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1857431 (MGI:6405577|PMID:31655293) RGD PMID:31655293 MGI:6405577 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
G Col9a1 collagen type IX alpha 1 chain IEP RGD PMID:8992886 RGD:1600950 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213
JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:4438315|PMID:19767744)
UniProt
RGD
PMID:19767744 GO_REF:0000024 MGI:4438315 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763
JBrowse link
G Cst5 cystatin D acts_upstream_of_or_within ISO (MGI:2681375|PMID:13679380) RGD PMID:13679380 MGI:2681375 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754
JBrowse link
G Cytl1 cytokine like 1 acts_upstream_of_or_within ISO (MGI:3758399|PMID:17644814) RGD PMID:17644814 MGI:3758399 NCBI chr14:73,053,876...73,058,886
Ensembl chr14:73,053,877...73,058,886
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:4431165|PMID:20080592), (MGI:4834113|PMID:20404326), (MGI:5487694|PMID:23458899), (MGI:6407539|PMID:28768899) RGD PMID:20080592 PMID:20404326 PMID:23458899 PMID:28768899 MGI:4431165 MGI:4834113 MGI:5487694 MGI:6407539 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961|MGI:95522 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:104723 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr16:66,492,445...66,546,731
Ensembl chr16:66,494,042...66,547,350
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1915509 (MGI:5473722|PMID:23333501) RGD PMID:23333501 MGI:5473722 NCBI chr13:29,946,809...30,163,901
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:15946906)
UniProt
RGD
PMID:15946906 GO_REF:0000024 NCBI chr17:40,084,427...40,132,035
Ensembl chr17:40,084,617...40,126,939
JBrowse link
G Hes5 hes family bHLH transcription factor 5 NOT|involved_in ISS
ISO
GO_REF:0000024
(MGI:5285816|PMID:17093926)
UniProt
RGD
PMID:17093926 GO_REF:0000024 MGI:5285816 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS
(PMID:21484705)
GO_REF:0000024
RGD
UniProt
PMID:21484705 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (MGI:1930356|PMID:10545953) RGD PMID:10545953 MGI:1930356 NCBI chr 5:149,677,437...149,778,594 JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:95728 (MGI:5473722|PMID:23333501) RGD PMID:23333501 MGI:5473722 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3758399|PMID:17644814)
(MGI:5487758|PMID:17202865)
Ensembl
RGD
PMID:17202865 PMID:17644814 GO_REF:0000107 MGI:3758399 MGI:5487758 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
JBrowse link
G Matn1 matrilin 1 acts_upstream_of_or_within ISO MGI:2153042|MGI:3663272 (MGI:3655339|PMID:16877353) RGD PMID:16877353 MGI:3655339 NCBI chr 5:143,117,198...143,127,140
Ensembl chr 5:143,117,504...143,127,059
JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:99533 (MGI:3701381|PMID:17336904) RGD PMID:17336904 MGI:3701381 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mef2d myocyte enhancer factor 2D involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99458 (MGI:3701381|PMID:17336904)
Ensembl
RGD
PMID:17336904 GO_REF:0000107 MGI:3701381 NCBI chr 2:173,606,054...173,635,620
Ensembl chr 2:173,606,490...173,634,457
JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:6,072,908...6,075,158
Ensembl chr16:6,072,833...6,075,161
JBrowse link
G Nfib nuclear factor I/B involved_in ISS
ISO
GO_REF:0000024
(MGI:5284771|PMID:17904922)
UniProt
RGD
PMID:17904922 GO_REF:0000024 MGI:5284771 NCBI chr 5:96,759,208...96,973,092
Ensembl chr 5:96,764,653...96,975,479
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
JBrowse link
G Prkca protein kinase C, alpha acts_upstream_of_or_within ISO (MGI:3758399|PMID:17644814) RGD PMID:17644814 MGI:3758399 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012
JBrowse link
G Pth1r parathyroid hormone 1 receptor acts_upstream_of_or_within ISO MGI:2154519|MGI:99829 (MGI:3620436|PMID:16476422), (MGI:3624906|PMID:9832460) RGD PMID:9832460 PMID:16476422 MGI:3620436 MGI:3624906 NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729
JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO (MGI:3807134|PMID:18638549) RGD PMID:18638549 MGI:3807134 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302
JBrowse link
G Runx1 RUNX family transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:102672|MGI:2176466|MGI:97801 (MGI:3620436|PMID:16476422), (MGI:5462316|PMID:22916278)
RGD PMID:16476422 PMID:22916278 PMID:21873635 MGI:3620436 MGI:5462316, RGD:13792537 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Runx3 RUNX family transcription factor 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:99829 (MGI:5462316|PMID:22916278)
RGD PMID:22916278 PMID:21873635 MGI:5462316, RGD:13792537 NCBI chr 5:147,393,926...147,419,161
Ensembl chr 5:147,360,994...147,419,156
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4418577|PMID:20059955) RGD PMID:20059955 MGI:4418577 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within ISO (MGI:5462316|PMID:22916278) RGD PMID:22916278 MGI:5462316 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO MGI:3691857 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193
JBrowse link
G Slc39a14 solute carrier family 39 member 14 acts_upstream_of ISO (MGI:4950776|PMID:21445361) RGD PMID:21445361 MGI:4950776 NCBI chr15:45,376,806...45,423,549
Ensembl chr15:45,376,917...45,423,524
JBrowse link
G Snx19 sorting nexin 19 involved_in
acts_upstream_of_or_within
ISO (PMID:19877062)
(MGI:5605298|PMID:19877062)
RGD PMID:19877062 MGI:5605298 NCBI chr 8:28,829,881...28,867,600
Ensembl chr 8:28,829,886...28,867,061
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(PMID:9119111)
(MGI:3044231|PMID:15132997), (MGI:6414736|PMID:29644115), (MGI:6414737|PMID:32103177)
GO_REF:0000024
RGD
UniProt
PMID:9119111 PMID:15132997 PMID:29644115 PMID:32103177 PMID:21873635 GO_REF:0000024 MGI:3044231 MGI:6414736 MGI:6414737, RGD:13792537 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:15040835)
UniProt
RGD
PMID:15040835 GO_REF:0000024 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfbi transforming growth factor, beta induced IEP RGD PMID:16546826 RGD:1599388 NCBI chr17:7,955,603...7,984,903
Ensembl chr17:7,955,603...7,985,240
JBrowse link
G Trps1 transcriptional repressor GATA binding 1 acts_upstream_of_or_within ISO MGI:107191|MGI:95688 (MGI:3819026|PMID:18363966) RGD PMID:18363966 MGI:3819026 NCBI chr 7:81,916,668...82,142,733
Ensembl chr 7:81,921,601...82,141,905
JBrowse link
G Wnt10b Wnt family member 10B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 2:192,454,226...192,468,599
Ensembl chr 2:192,453,824...192,470,308
JBrowse link
G Wnt5b Wnt family member 5B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 4:152,609,566...152,733,790
Ensembl chr 4:152,609,569...152,733,407
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) RGD PMID:17202865 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3579503 (MGI:4818263|PMID:19623616)
Ensembl
RGD
PMID:19623616 GO_REF:0000107 MGI:4818263 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:5698232 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 acts_upstream_of_or_within ISO MGI:5698367 (MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:5698232 NCBI chr 1:163,831,876...163,899,925
Ensembl chr 1:163,832,015...163,899,393
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:20676705)
GO_REF:0000024
RGD
UniProt
PMID:20676705 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO MGI:4829605 (MGI:4822550|PMID:20089971) RGD PMID:20089971 MGI:4822550 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781
JBrowse link
chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:5528913|PMID:23958822) RGD PMID:23958822 MGI:5528913 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Mex3c mex-3 RNA binding family member C acts_upstream_of_or_within ISO MGI:3764947 (MGI:5446032|PMID:22357625) RGD PMID:22357625 MGI:5446032 NCBI chr18:67,167,600...67,188,595
Ensembl chr18:67,166,718...67,188,595
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO
GO_REF:0000024
(MGI:4950303|PMID:21367821)
UniProt
RGD
PMID:21367821 GO_REF:0000024 MGI:4950303 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264
JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain acts_upstream_of_or_within ISO MGI:5315593 (MGI:5315238|PMID:22206015) RGD PMID:22206015 MGI:5315238 NCBI chr 5:76,647,302...76,765,987
Ensembl chr 5:76,647,429...76,765,174
JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within ISO MGI:2135614 (MGI:5700251|PMID:26496357) RGD PMID:26496357 MGI:5700251 NCBI chr 8:106,922,058...106,991,678
Ensembl chr 8:106,922,978...106,991,089
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa6 annexin A6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:39,101,395...39,156,483
Ensembl chr10:39,097,109...39,156,433
JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO MGI:1857283 (MGI:3807134|PMID:18638549) RGD PMID:18638549 MGI:3807134 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (MGI:5817320|PMID:26098911) RGD PMID:26098911 MGI:5817320 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Nppc natriuretic peptide C involved_in ISS
ISO
GO_REF:0000024
(MGI:2177134|PMID:11259675)
UniProt
RGD
PMID:11259675 GO_REF:0000024 MGI:2177134 NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251
JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst5 cystatin D involved_in ISO MGI:3629665 (MGI:3629269|PMID:16680148) RGD PMID:16680148 MGI:3629269 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754
JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO
GO_REF:0000024
(MGI:5317468|PMID:22421045)
UniProt
RGD
PMID:22421045 GO_REF:0000024 MGI:5317468 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO MGI:2384513 (MGI:4949016|PMID:21420963) RGD PMID:21420963 MGI:4949016 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn1 matrilin 1 acts_upstream_of_or_within ISO MGI:2153042|MGI:3663272 (MGI:3655339|PMID:16877353) RGD PMID:16877353 MGI:3655339 NCBI chr 5:143,117,198...143,127,140
Ensembl chr 5:143,117,504...143,127,059
JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO MGI:1857283 (MGI:3807134|PMID:18638549) RGD PMID:18638549 MGI:3807134 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (PMID:19113921) RGD PMID:19113921 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783
JBrowse link
G Nppc natriuretic peptide C involved_in ISS
ISO
GO_REF:0000024
(MGI:2177134|PMID:11259675)
UniProt
RGD
PMID:11259675 GO_REF:0000024 MGI:2177134 NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251
JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain IEP spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469|MGI:98737|MGI:98739 (MGI:3795666|PMID:18467703), (MGI:3807836|PMID:18191556) RGD PMID:18191556 PMID:18467703 MGI:3795666 MGI:3807836 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213
JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180787|MGI:3758741|MGI:88465|MGI:98737|MGI:98739 (MGI:3723532|PMID:17588960), (MGI:3795666|PMID:18467703), (MGI:3807836|PMID:18191556)
Ensembl
RGD
PMID:17588960 PMID:18191556 PMID:18467703 GO_REF:0000107 MGI:3723532 MGI:3795666 MGI:3807836 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (MGI:5817320|PMID:26098911) RGD PMID:26098911 MGI:5817320 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:98729 (MGI:4949554|PMID:21444811)
Ensembl
RGD
PMID:21444811 GO_REF:0000107 MGI:4949554 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97856|MGI:97857 (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO MGI:1340026 (MGI:4949016|PMID:21420963) RGD PMID:21420963 MGI:4949016 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
G Thbs1 thrombospondin 1 acts_upstream_of_or_within ISO MGI:2154534|MGI:88465|MGI:88469|MGI:98739 (MGI:3795666|PMID:18467703) RGD PMID:18467703 MGI:3795666 NCBI chr 3:105,056,286...105,071,445
Ensembl chr 3:105,056,292...105,071,440
JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO MGI:3581964|MGI:88465|MGI:88469|MGI:98737 (MGI:3795666|PMID:18467703) RGD PMID:18467703 MGI:3795666 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:174,621,812...174,633,594
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:2178865|PMID:11923874) RGD PMID:11923874 MGI:2178865 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
mandibular condyle articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within IEP
ISO
MGI:2653208 (MGI:5588521|PMID:23900597) RGD PMID:23900597 PMID:20097540 MGI:5588521, RGD:15039407 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672
JBrowse link
negative regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsk cathepsin K acts_upstream_of_or_within ISO MGI:2182131 (MGI:4397742|PMID:19834056) RGD PMID:19834056 MGI:4397742 NCBI chr 2:183,058,586...183,069,551
Ensembl chr 2:183,058,569...183,069,550
JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO MGI:98958 (MGI:3823145|PMID:18991062) RGD PMID:18991062 MGI:3823145 NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208
JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (MGI:4397742|PMID:19834056) RGD PMID:19834056 MGI:4397742 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
JBrowse link
G Lep leptin IDA RGD PMID:19876764 RGD:5128612 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:1353721|PMID:10684250)
Ensembl
RGD
PMID:10684250 GO_REF:0000107 MGI:1353721 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO (MGI:1353721|PMID:10684250) RGD PMID:10684250 MGI:1353721 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO (MGI:1353721|PMID:10684250) RGD PMID:10684250 MGI:1353721 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO (MGI:1353721|PMID:10684250) RGD PMID:10684250 MGI:1353721 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO MGI:1888389 (MGI:5140242|PMID:21780244) RGD PMID:21780244 MGI:5140242 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (MGI:3839710|PMID:19047045) RGD PMID:19047045 MGI:3839710 NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133
JBrowse link
negative regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within ISO (PMID:90087) RGD PMID:90087 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847
JBrowse link
G Rflna refilin A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1923816 (MGI:5570967|PMID:24436304)
RGD PMID:24436304 PMID:21873635 MGI:5570967, RGD:13792537 NCBI chr12:31,633,361...31,642,317
Ensembl chr12:31,633,361...31,642,317
JBrowse link
G Rflnb refilin B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1920371 (MGI:5570967|PMID:24436304)
RGD PMID:24436304 PMID:21873635 MGI:5570967, RGD:13792537 NCBI chr10:60,893,693...60,899,970
Ensembl chr10:60,893,713...60,899,976
JBrowse link
negative regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO (PMID:22247065) RGD PMID:22247065 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629
JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO (PMID:22247065) RGD PMID:22247065 NCBI chr 8:90,704,727...90,744,331
Ensembl chr 8:90,704,727...90,744,328
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3714677|PMID:17481601)
Ensembl
RGD
PMID:17481601 GO_REF:0000107 MGI:3714677 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Ccn4 cellular communication network factor 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:6294593|PMID:15331410)
Ensembl
RGD
PMID:15331410 GO_REF:0000107 MGI:6294593 NCBI chr 7:98,645,238...98,677,253
Ensembl chr 7:98,645,182...98,677,248
JBrowse link
G Chadl chondroadherin-like involved_in ISO (MGI:5617405|PMID:25451920) RGD PMID:25451920 MGI:5617405 NCBI chr 7:113,205,323...113,218,678
Ensembl chr 7:113,210,748...113,217,272
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2446084 (MGI:3701031|PMID:16818445)
Ensembl
RGD
PMID:16818445 GO_REF:0000107 MGI:3701031 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA
ISS
(PMID:20005202)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20005202 GO_REF:0000024 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018
JBrowse link
G Gdf5 growth differentiation factor 5 involved_in ISO (PMID:21976273) RGD PMID:21976273 NCBI chr 3:144,454,306...144,458,757
Ensembl chr 3:144,454,338...144,458,612
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (MGI:3709778|PMID:17328886) RGD PMID:17328886 MGI:3709778 NCBI chr13:29,946,809...30,163,901
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:10556075) RGD PMID:10556075 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within ISO MGI:2180017 (MGI:2178869|PMID:11790802) RGD PMID:11790802 MGI:2178869 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975
JBrowse link
G Mkx mohawk homeobox IMP RGD PMID:27370800 RGD:40924660 NCBI chr17:55,077,073...55,156,877
Ensembl chr17:55,077,540...55,156,124
JBrowse link
G Nkx3-2 NK3 homeobox 2 involved_in ISO (MGI:3617032|PMID:16421188) RGD PMID:16421188 MGI:3617032 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061
JBrowse link
G Pth parathyroid hormone involved_in IMP PMID:11604398 CAFA PMID:11604398 RGD:12793028 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within ISO MGI:2154515|MGI:95728 (MGI:1352921|PMID:8895385), (MGI:3709778|PMID:17328886)
(PMID:90087)
RGD PMID:90087 PMID:8895385 PMID:17328886 MGI:1352921 MGI:3709778 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:6414736|PMID:29644115)
UniProt
RGD
PMID:29644115 GO_REF:0000024 MGI:6414736 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO (MGI:1353721|PMID:10684250) RGD PMID:10684250 MGI:1353721 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO (MGI:1353721|PMID:10684250) RGD PMID:10684250 MGI:1353721 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:19756381) RGD PMID:19756381 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2158693 (MGI:2135696|PMID:11371614)
UniProt
RGD
PMID:11371614 GO_REF:0000024 MGI:2135696 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in ISO (MGI:3848261|PMID:19494318) RGD PMID:19494318 MGI:3848261 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO MGI:3701350|MGI:88276 (MGI:3701031|PMID:16818445) RGD PMID:16818445 MGI:3701031 NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133
JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (MGI:6187806|PMID:26972716) RGD PMID:26972716 MGI:6187806 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672
JBrowse link
positive regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp1 bone morphogenetic protein 1 acts_upstream_of_or_within ISO (PMID:3201241) RGD PMID:3201241 NCBI chr15:45,551,603...45,595,862
Ensembl chr15:45,551,603...45,595,776
JBrowse link
G Bmp10 bone morphogenetic protein 10 involved_in IEA
ISO
GO_REF:0000107
(MGI:5621263|PMID:19956691)
Ensembl
RGD
PMID:19956691 GO_REF:0000107 MGI:5621263 NCBI chr 4:119,872,066...119,877,694
Ensembl chr 4:119,872,045...119,878,627
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:3201241)
(MGI:1353721|PMID:10684250)
Ensembl
RGD
PMID:3201241 PMID:10684250 GO_REF:0000107 MGI:1353721 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:3201241)
GO_REF:0000107
RGD
Ensembl
PMID:3201241 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Ccn1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:1195020|PMID:9441684)
Ensembl
RGD
PMID:9441684 GO_REF:0000107 MGI:1195020 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
JBrowse link
G Gdf2 growth differentiation factor 2 involved_in ISO (MGI:5621263|PMID:19956691) RGD PMID:19956691 MGI:5621263 NCBI chr16:9,255,430...9,261,429
Ensembl chr16:9,255,430...9,261,429
JBrowse link
G Mdk midkine involved_in ISS
ISO
GO_REF:0000024
(MGI:5693192|PMID:25551381)
UniProt
RGD
PMID:25551381 GO_REF:0000024 MGI:5693192 NCBI chr 3:77,901,156...77,903,997
Ensembl chr 3:77,901,158...77,903,130
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299) RGD PMID:10477299 MGI:1343990 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3849246|PMID:19251704)
Ensembl
RGD
PMID:19251704 GO_REF:0000107 MGI:3849246 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO (PMID:21401405) RGD PMID:21401405 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO (PMID:21401405) RGD PMID:21401405 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:21401405), (PMID:29503843)
(MGI:3839710|PMID:19047045)
GO_REF:0000024
RGD
UniProt
PMID:19047045 PMID:21401405 PMID:29503843 GO_REF:0000024 MGI:3839710 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3823145|PMID:18991062)
Ensembl
RGD
PMID:18991062 GO_REF:0000107 MGI:3823145 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISO
ISS
(PMID:21547890)
GO_REF:0000024
RGD
UniProt
PMID:21547890 GO_REF:0000024 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011
JBrowse link
positive regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp6 bone morphogenetic protein 6 IDA RGD PMID:23077084 RGD:7242190 NCBI chr17:26,318,121...26,469,034
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:95524 (MGI:3584218|PMID:15781473)
Ensembl
RGD
PMID:15781473 GO_REF:0000107 MGI:3584218 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818
JBrowse link
G Gdf5 growth differentiation factor 5 involved_in
acts_upstream_of_or_within
ISO (PMID:21976273), (PMID:24098149)
MGI:1927616 (MGI:1329266|PMID:9885252), (MGI:3819026|PMID:18363966)
RGD PMID:9885252 PMID:18363966 PMID:21976273 PMID:24098149 MGI:1329266 MGI:3819026 NCBI chr 3:144,454,306...144,458,757
Ensembl chr 3:144,454,338...144,458,612
JBrowse link
G Gdf6 growth differentiation factor 6 involved_in ISO
ISS
(PMID:26643732)
GO_REF:0000024
RGD
UniProt
PMID:26643732 GO_REF:0000024 NCBI chr 5:22,996,246...23,012,567
Ensembl chr 5:22,996,246...23,012,567
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (MGI:3709778|PMID:17328886) RGD PMID:17328886 MGI:3709778 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232
JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 3:59,584,840...59,587,257 JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5320274|PMID:21071451)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21071451 GO_REF:0000024 GO_REF:0000107 MGI:5320274 NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067
JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 acts_upstream_of_or_within ISO (MGI:5703727|PMID:19410023) RGD PMID:19410023 MGI:5703727 NCBI chr16:6,072,908...6,075,158
Ensembl chr16:6,072,833...6,075,161
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO (MGI:3813934|PMID:19097194), (MGI:4438146|PMID:19465597) RGD PMID:19097194 PMID:19465597 MGI:3813934 MGI:4438146 NCBI chr 6:11,455,686...11,465,002
Ensembl chr 6:11,455,686...11,465,556
JBrowse link
G Por cytochrome p450 oxidoreductase IMP RGD PMID:19264869 RGD:2316785 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit IMP RGD PMID:17884819 RGD:2298851 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176465 (MGI:1332911|PMID:10072783)
Ensembl
RGD
PMID:10072783 GO_REF:0000107 MGI:1332911 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Smad3 SMAD family member 3 involved_in ISO (MGI:5285145|PMID:21035443) RGD PMID:21035443 MGI:5285145 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO
IBA
(PMID:21401405)
(MGI:5285147|PMID:20940257)
PMID:21873635
RGD PMID:20940257 PMID:21401405 PMID:21873635 MGI:5285147, RGD:13792537 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO
IBA
(PMID:21401405)
(MGI:5285147|PMID:20940257)
PMID:21873635
RGD PMID:20940257 PMID:21401405 PMID:21873635 MGI:5285147, RGD:13792537 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
IBA
(PMID:20676705), (PMID:21401405)
(MGI:4950303|PMID:21367821), (MGI:5285147|PMID:20940257)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:20676705 PMID:20940257 PMID:21367821 PMID:21401405 PMID:21873635 GO_REF:0000024 MGI:4950303 MGI:5285147, RGD:13792537 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Thrb thyroid hormone receptor beta IDA RGD PMID:15647824 RGD:1601663 NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISO
ISS
(PMID:21547890)
GO_REF:0000024
RGD
UniProt
PMID:21547890 GO_REF:0000024 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011
JBrowse link
G Zfp219 zinc finger protein 219 involved_in ISO (MGI:5285147|PMID:20940257) RGD PMID:20940257 MGI:5285147 NCBI chr15:24,695,831...24,710,039
Ensembl chr15:24,695,837...24,710,030
JBrowse link
positive regulation of chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad7 SMAD family member 7 involved_in IEA
ISO
GO_REF:0000107
(MGI:6377914|PMID:29503843)
Ensembl
RGD
PMID:29503843 GO_REF:0000107 MGI:6377914 NCBI chr18:68,988,429...69,016,774
Ensembl chr18:68,988,429...69,016,765
JBrowse link
regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:4830625|PMID:20501701) RGD PMID:20501701 MGI:4830625 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (MGI:6377983|PMID:30424580) RGD PMID:30424580 MGI:6377983 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027) RGD PMID:18802027 MGI:4413438 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5582670|PMID:24505141)
Ensembl
RGD
PMID:24505141 GO_REF:0000107 MGI:5582670 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (MGI:4830625|PMID:20501701) RGD PMID:20501701 MGI:4830625 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3579503 (MGI:4818263|PMID:19623616)
Ensembl
RGD
PMID:19623616 GO_REF:0000107 MGI:4818263 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
JBrowse link
regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO MGI:2663631 (MGI:4413658|PMID:18597638) RGD PMID:18597638 MGI:4413658 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734
JBrowse link
G Glg1 golgi glycoprotein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4829764 (MGI:4829577|PMID:20530870)
Ensembl
RGD
PMID:20530870 GO_REF:0000107 MGI:4829577 NCBI chr19:39,124,892...39,224,178
Ensembl chr19:39,124,641...39,224,178
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (MGI:5462316|PMID:22916278) RGD PMID:22916278 MGI:5462316 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232
JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (MGI:5462316|PMID:22916278) RGD PMID:22916278 MGI:5462316 NCBI chr 3:59,584,840...59,587,257 JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO (MGI:5462316|PMID:22916278) RGD PMID:22916278 MGI:5462316 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518
JBrowse link
G Maf MAF bZIP transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148636 (MGI:2676505|PMID:14512017)
Ensembl
RGD
PMID:14512017 GO_REF:0000107 MGI:2676505 NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365
JBrowse link
G Mboat2 membrane bound O-acyltransferase domain containing 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6467698|PMID:29196633)
UniProt
RGD
PMID:29196633 GO_REF:0000024 MGI:6467698 NCBI chr 6:41,471,135...41,597,599
Ensembl chr 6:41,471,161...41,593,485
JBrowse link
G Mdk midkine involved_in ISS
ISO
GO_REF:0000024
(MGI:5693192|PMID:25551381)
UniProt
RGD
PMID:25551381 GO_REF:0000024 MGI:5693192 NCBI chr 3:77,901,156...77,903,997
Ensembl chr 3:77,901,158...77,903,130
JBrowse link
G Prkg2 protein kinase cGMP-dependent 2 IGI RGD PMID:15466490 RGD:150429792 NCBI chr14:10,559,882...10,668,479
Ensembl chr14:10,559,882...10,666,888
JBrowse link
G Pthlh parathyroid hormone-like hormone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847
JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3628798 (MGI:3621617|PMID:16537395)
GO_REF:0000107
RGD
Ensembl
PMID:16537395 GO_REF:0000107 MGI:3621617 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193
JBrowse link
G Trps1 transcriptional repressor GATA binding 1 involved_in ISO (MGI:3848565|PMID:19389374) RGD PMID:19389374 MGI:3848565 NCBI chr 7:81,916,668...82,142,733
Ensembl chr 7:81,921,601...82,141,905
JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO MGI:2663959 (MGI:4365886|PMID:19725955) RGD PMID:19725955 MGI:4365886 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689
JBrowse link
G Por cytochrome p450 oxidoreductase IMP positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245
JBrowse link
trachea cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:1857622 (MGI:1096258|PMID:9376317) RGD PMID:9376317 MGI:1096258 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:1932114|MGI:2445724 (MGI:1096258|PMID:9376317)
MGI:1931079 (MGI:60925|PMID:8388780)
RGD PMID:8388780 PMID:9376317 MGI:1096258 MGI:60925 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2429649 (MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:5524169 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206 (MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:5524169 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
trachea cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (MGI:1195049|PMID:9441679) RGD PMID:9441679 MGI:1195049 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1922667 (MGI:3774879|PMID:18256198)
RGD PMID:18256198 PMID:21873635 MGI:3774879, RGD:13792537 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO MGI:1298218 (MGI:3774879|PMID:18256198) RGD PMID:18256198 MGI:3774879 NCBI chr 7:74,096,378...74,239,398
Ensembl chr 7:74,103,090...74,238,933
JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO MGI:3793280 (MGI:3788965|PMID:18367557) RGD PMID:18367557 MGI:3788965 NCBI chr 7:116,634,817...116,679,089
Ensembl chr 7:116,634,814...116,679,581
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        animal organ development 4130
          cartilage development 221
            articular cartilage development + 6
            bronchus cartilage development + 2
            cartilage condensation + 23
            cartilage development involved in endochondral bone morphogenesis + 42
            cartilage morphogenesis + 12
            chondroblast differentiation 6
            chondrocyte differentiation + 122
            negative regulation of cartilage development + 31
            positive regulation of cartilage development + 32
            regulation of cartilage development + 73
            trachea cartilage development + 8
Path 2
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        multicellular organism development 5727
          system development 5373
            skeletal system development 572
              cartilage development 221
                articular cartilage development + 6
                bronchus cartilage development + 2
                cartilage condensation + 23
                cartilage development involved in endochondral bone morphogenesis + 42
                cartilage morphogenesis + 12
                chondroblast differentiation 6
                chondrocyte differentiation + 122
                negative regulation of cartilage development + 31
                positive regulation of cartilage development + 32
                regulation of cartilage development + 73
                trachea cartilage development + 8
paths to the root