Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:cartilage development
go back to main search page
Accession:GO:0051216 term browser browse the term
Definition:The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
Synonyms:exact_synonym: cartilage biogenesis;   cartilage biosynthesis;   cartilage element development;   cartilage formation;   cartilage organ development;   chondrogenesis
 xref: Wikipedia:Chondrogenesis


show annotations for term's descendants           Sort by:
cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856097 (PMID:8895222) RGD PMID:8895222 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO
IEA 		MGI:3767672 (PMID:19195025)
GO_REF:0000107 		RGD
Ensembl		 PMID:19195025 GO_REF:0000107 NCBI chr 1:211,614,195...211,633,504
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO
IEA 		MGI:3521669 (PMID:19195025)
GO_REF:0000107 		RGD
Ensembl		 PMID:19195025 GO_REF:0000107 NCBI chr19:10,915,566...10,950,911
Ensembl chr19:10,909,619...10,944,993 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp3 bone morphogenetic protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:10,712,489...10,737,153
Ensembl chr14:10,712,489...10,737,153 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:26,523,704...26,785,558
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158390|MGI:3577961 (PMID:15492776)
GO_REF:0000107 		RGD
Ensembl		 PMID:15492776 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Cd44 CD44 molecule involved_in ISO
IEA 		(PMID:11944887)
GO_REF:0000107 		RGD
Ensembl		 PMID:11944887 GO_REF:0000107 NCBI chr 3:109,610,824...109,699,776
Ensembl chr 3:89,157,058...89,244,620 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:19828624) RGD PMID:19828624 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (PMID:16079159) RGD PMID:16079159 NCBI chr 7:22,412,121...22,630,577
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO
IEA 		MGI:5007063 (PMID:22280990)
GO_REF:0000107 		RGD
Ensembl		 PMID:22280990 GO_REF:0000107 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Cnmd chondromodulin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:55,041,548...55,066,297
Ensembl chr15:55,041,561...55,066,297 		JBrowse link
G Col10a1 collagen type X alpha 1 chain IMP RGD PMID:10853827 RGD:704421 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:4100752), (PMID:4110409), (PMID:7859283), (PMID:886247) RGD PMID:886247 PMID:4100752 PMID:4110409 PMID:7859283 MGI:60257 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in ISO
IBA 		(PMID:9188673)
GO_REF:0000033 		RGD
GO_Central		 PMID:9188673 GO_REF:0000033 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEP
IEA
ISO 		GO_REF:0000107
MGI:1857275|MGI:2152978 (PMID:10100048), (PMID:11171689), (PMID:11680679), (PMID:7276808), (PMID:7590256), (PMID:9061443), (PMID:9165353), (PMID:9832566) 		Ensembl
RGD		 PMID:7276808 PMID:7590256 PMID:9061443 PMID:9165353 PMID:9832566 More... GO_REF:0000107, RGD:70694 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1857431 (PMID:31655293) RGD PMID:31655293 NCBI chr 9:54,866,646...54,902,578
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:2153356 (PMID:19248115), (PMID:22448243)
GO_REF:0000107 		RGD
Ensembl		 PMID:19248115 PMID:22448243 GO_REF:0000107 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469 (PMID:11680679), (PMID:18191556) RGD PMID:11680679 PMID:18191556 NCBI chr 9:34,081,364...34,164,552
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO
IEA 		MGI:3758741|MGI:5550566|MGI:88465 (PMID:17588960), (PMID:18191556), (PMID:23951406)
GO_REF:0000107 		RGD
Ensembl		 PMID:17588960 PMID:18191556 PMID:23951406 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Cr2 complement C3d receptor 2 acts_upstream_of_or_within ISO (PMID:19828624) RGD PMID:19828624 NCBI chr13:109,207,034...109,244,980
Ensembl chr13:106,685,413...106,716,235 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:19767744) 		UniProt
RGD		 PMID:19767744 GO_REF:0000024 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:4868209 (PMID:20812917)
GO_REF:0000107 		RGD
Ensembl		 PMID:20812917 GO_REF:0000107 NCBI chr16:25,761,946...26,097,306
Ensembl chr16:21,235,784...21,330,319 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO
IEA
IBA 		(PMID:28263186)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28263186 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:138,315,006...138,336,691
Ensembl chr 3:117,861,653...117,882,680 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (PMID:21098571) RGD PMID:21098571 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857828 (PMID:7590232)
GO_REF:0000107 		RGD
Ensembl		 PMID:7590232 GO_REF:0000107 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Dspp dentin sialophosphoprotein IEP femoral head RGD PMID:20679519 RGD:12914771 NCBI chr14:5,870,232...5,876,339
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857637 (PMID:8152482)
GO_REF:0000107 		RGD
Ensembl		 PMID:8152482 GO_REF:0000107 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:2385534|MGI:6402836 (PMID:15625282), (PMID:24770645), (PMID:25260930) RGD PMID:15625282 PMID:24770645 PMID:25260930 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 acts_upstream_of_or_within ISO
IEA 		MGI:5575860 (PMID:24550287)
GO_REF:0000107 		RGD
Ensembl		 PMID:24550287 GO_REF:0000107 NCBI chr 5:161,323,981...161,337,289
Ensembl chr 5:161,323,998...161,337,282 		JBrowse link
G Esrra estrogen related receptor, alpha IMP RGD PMID:17170100 RGD:1625657 NCBI chr 1:213,533,309...213,543,432
Ensembl chr 1:204,104,101...204,114,268 		JBrowse link
G Evc EvC ciliary complex subunit 1 IEP RGD PMID:15278943 RGD:1598913 NCBI chr14:73,456,181...73,498,955
Ensembl chr14:73,456,222...73,498,099 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:23458899) RGD PMID:23458899 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO MGI:1857833 (PMID:9733575) RGD PMID:9733575 NCBI chr 1:244,426,892...244,514,188
Ensembl chr 1:244,426,896...244,514,163 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (PMID:15781473) RGD PMID:15781473 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within ISO
IEA 		(PMID:15509771)
GO_REF:0000107 		RGD
Ensembl		 PMID:15509771 GO_REF:0000107 NCBI chr 6:30,017,952...30,039,269
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO
IEA 		(PMID:29247144)
GO_REF:0000107 		RGD
Ensembl		 PMID:29247144 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO
IEA 		MGI:3043361 (PMID:15797856)
GO_REF:0000107 		RGD
Ensembl		 PMID:15797856 GO_REF:0000107 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO 		GO_REF:0000024
(PMID:17093926) 		UniProt
RGD		 PMID:17093926 GO_REF:0000024 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA 		MGI:2386649|MGI:2386679 (PMID:11691837)
GO_REF:0000107 		RGD
Ensembl		 PMID:11691837 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO
IEA 		MGI:96184|MGI:96207 (PMID:9441667)
GO_REF:0000107 		RGD
Ensembl		 PMID:9441667 GO_REF:0000107 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Hoxb3 homeo box B3 acts_upstream_of_or_within ISO
IEA 		MGI:96175|MGI:96207 (PMID:9441667)
GO_REF:0000107 		RGD
Ensembl		 PMID:9441667 GO_REF:0000107 NCBI chr10:81,786,001...81,810,655
Ensembl chr10:81,299,357...81,313,107 		JBrowse link
G Hoxc4 homeo box C4 acts_upstream_of_or_within ISO
IEA 		MGI:1857570 (PMID:8626021)
GO_REF:0000107 		RGD
Ensembl		 PMID:8626021 GO_REF:0000107 NCBI chr 7:134,135,279...134,173,133
Ensembl chr 7:134,170,591...134,173,133 		JBrowse link
G Hoxc6 homeo box C6 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:134,138,017...134,148,899
Ensembl chr 7:134,135,502...134,148,392 		JBrowse link
G Hoxd3 homeo box D3 acts_upstream_of_or_within ISO
IEA 		MGI:96175|MGI:96184 (PMID:9441667)
GO_REF:0000107 		RGD
Ensembl		 PMID:9441667 GO_REF:0000107 NCBI chr 3:59,638,708...59,650,282
Ensembl chr 3:59,638,708...59,650,282 		JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11944887) 		UniProt
Ensembl
RGD		 PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,250,668...108,254,519
Ensembl chr 8:108,250,667...108,260,210 		JBrowse link
G Hyal2 hyaluronidase 2 involved_in ISO
IEA
ISS 		(PMID:11944887)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850 		JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISO (PMID:11944887) RGD PMID:11944887 NCBI chr 8:108,254,385...108,260,020
Ensembl chr 8:108,250,667...108,260,647 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		(PMID:32227389)
GO_REF:0000107 		RGD
Ensembl		 PMID:32227389 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:17889828)
GO_REF:0000107
MGI:1934258 (PMID:17191253) 		RGD
Ensembl		 PMID:17191253 PMID:17889828 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Il17f interleukin 17F involved_in IEA
ISO 		GO_REF:0000107
(PMID:11574464) 		Ensembl
RGD		 PMID:11574464 GO_REF:0000107 NCBI chr 9:30,686,532...30,697,918
Ensembl chr 9:23,190,100...23,201,482 		JBrowse link
G Itgb8 integrin subunit beta 8 involved_in ISO (PMID:24312400) RGD PMID:24312400 NCBI chr 6:146,267,982...146,351,245
Ensembl chr 6:140,127,203...140,208,476 		JBrowse link
G Lum lumican IEP RGD PMID:19746167 RGD:2317685 NCBI chr 7:34,245,323...34,252,510
Ensembl chr 7:32,358,614...32,365,793 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:17644814) RGD PMID:17644814 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Matn3 matrilin 3 acts_upstream_of_or_within ISO
IEA 		MGI:3759029 (PMID:23951406)
GO_REF:0000107 		RGD
Ensembl		 PMID:23951406 GO_REF:0000107 NCBI chr 6:31,748,517...31,768,564
Ensembl chr 6:31,748,474...31,768,101 		JBrowse link
G Mgp matrix Gla protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:169,766,290...169,769,612
Ensembl chr 4:169,766,279...169,769,667 		JBrowse link
G Mir140 microRNA 140 acts_upstream_of_or_within ISO MGI:4461000 (PMID:20466812) RGD PMID:20466812 NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675 		JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO
IEA 		MGI:3526444 (PMID:19195025)
GO_REF:0000107 		RGD
Ensembl		 PMID:19195025 GO_REF:0000107 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162 		JBrowse link
G Msx1 msh homeobox 1 IMP RGD PMID:10332146 RGD:1600462 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IMP
IEA
ISO 		GO_REF:0000107
MGI:1926381 (PMID:10742104), (PMID:11668602) 		Ensembl
RGD		 PMID:10742104 PMID:11668602 PMID:10332146 GO_REF:0000107, RGD:1600462 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:6,072,908...6,075,161
Ensembl chr16:6,072,833...6,075,161 		JBrowse link
G Nfatc2 nuclear factor of activated T-cells 2 involved_in ISO
IEA 		(PMID:35789258)
GO_REF:0000107
(PMID:10620601) 		RGD
Ensembl		 PMID:10620601 PMID:35789258 GO_REF:0000107 NCBI chr 3:177,615,189...177,747,493
Ensembl chr 3:157,198,872...157,328,325 		JBrowse link
G Nfia nuclear factor I/A involved_in IEA
ISO 		GO_REF:0000107
MGI:2449024 (PMID:29247144) 		Ensembl
RGD		 PMID:29247144 GO_REF:0000107 NCBI chr 5:112,436,655...112,781,878
Ensembl chr 5:112,436,644...112,775,885 		JBrowse link
G Nog noggin involved_in
acts_upstream_of 		IEA
ISO 		GO_REF:0000104
GO_REF:0000043
GO_REF:0000107
(PMID:10684250) 		UniProt
Ensembl
RGD		 PMID:10684250 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO
IEA 		MGI:1856702|MGI:3774275 (PMID:15722353), (PMID:17728275)
GO_REF:0000107 		RGD
Ensembl		 PMID:15722353 PMID:17728275 GO_REF:0000107 NCBI chr 5:62,678,197...62,697,360
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:36905926) 		Ensembl
RGD		 PMID:36905926 GO_REF:0000107 NCBI chr13:50,865,253...50,985,107
Ensembl chr13:48,316,301...48,433,326 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO
IEA 		MGI:1857831 (PMID:8631261)
GO_REF:0000107 		RGD
Ensembl		 PMID:8631261 GO_REF:0000107 NCBI chr 5:157,279,623...157,381,188
Ensembl chr 5:151,999,092...152,097,979 		JBrowse link
G Pitx1 paired-like homeodomain 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857659 (PMID:10101115)
GO_REF:0000107 		RGD
Ensembl		 PMID:10101115 GO_REF:0000107 NCBI chr17:8,794,134...8,800,292
Ensembl chr17:8,794,134...8,800,291 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO
IEA 		(PMID:11891195)
GO_REF:0000107 		RGD
Ensembl		 PMID:11891195 GO_REF:0000107 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857640|MGI:98218 (PMID:7758948), (PMID:9876178)
GO_REF:0000107 		RGD
Ensembl		 PMID:7758948 PMID:9876178 GO_REF:0000107 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9876178) RGD PMID:9876178 NCBI chr 3:14,132,574...14,168,533
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3692768 (PMID:16751105)
GO_REF:0000107 		RGD
Ensembl		 PMID:16751105 GO_REF:0000107 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:3810257 (PMID:18729207)
GO_REF:0000107 		RGD
Ensembl		 PMID:18729207 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Smad1 SMAD family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:1328787|MGI:1859993 (PMID:19224984)
GO_REF:0000107 		RGD
Ensembl		 PMID:19224984 GO_REF:0000107 NCBI chr19:45,417,430...45,477,962
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
G Smad5 SMAD family member 5 acts_upstream_of_or_within ISO
IEA 		MGI:109452|MGI:1859993 (PMID:19224984)
GO_REF:0000107 		RGD
Ensembl		 PMID:19224984 GO_REF:0000107 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634 		JBrowse link
G Smad9 SMAD family member 9 acts_upstream_of_or_within ISO
IEA 		MGI:109452|MGI:1328787 (PMID:19224984)
GO_REF:0000107 		RGD
Ensembl		 PMID:19224984 GO_REF:0000107 NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA 		MGI:3575405 (PMID:17591962), (PMID:27325675)
GO_REF:0000107 		RGD
Ensembl		 PMID:17591962 PMID:27325675 GO_REF:0000107 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Snorc secondary ossification center associated regulator of chondrocyte maturation involved_in ISO (PMID:28323137) RGD PMID:28323137 NCBI chr 9:95,574,943...95,593,394
Ensembl chr 9:88,140,419...88,145,891 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:15529345), (PMID:26150426)
MGI:98368 (PMID:15634692) 		UniProt
RGD		 PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:15529345), (PMID:26150426)
MGI:98367 (PMID:15634692) 		UniProt
RGD		 PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of
involved_in
acts_upstream_of_or_within 		TAS
IEA
ISO
NAS
ISS
IEP 		GO_REF:0000107
(PMID:15529345), (PMID:28263186)
MGI:2158693 (PMID:11371614)
(PMID:19047045)
PMID:19828133
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11371614 PMID:15529345 PMID:19047045 PMID:28263186 PMID:11514554 More... GO_REF:0000024 GO_REF:0000107, RGD:70568, RGD:8553796, RGD:1599098 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000104
(PMID:20479257) 		UniProt
RGD		 PMID:20479257 GO_REF:0000024 GO_REF:0000104 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Sulf2 sulfatase 2 involved_in ISO
IEA 		(PMID:20479257)
GO_REF:0000107
GO_REF:0000104 		RGD
Ensembl
UniProt		 PMID:20479257 GO_REF:0000104 GO_REF:0000107 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415 		JBrowse link
G Tapt1 transmembrane anterior posterior transformation 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:66,873,467...66,919,737
Ensembl chr14:66,873,459...66,919,741 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO
IEA 		(PMID:18498113)
GO_REF:0000107 		RGD
Ensembl		 PMID:18498113 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 IEP RGD PMID:16208432 RGD:8694091 NCBI chr  X:3,766,509...3,772,578
Ensembl chr  X:1,212,972...1,217,664 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 involved_in ISO
IEA 		(PMID:30728324)
GO_REF:0000107 		RGD
Ensembl		 PMID:30728324 GO_REF:0000107 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:3471366 RGD:2317423 NCBI chr 9:120,760,057...120,776,149
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO
IEA 		(PMID:16826533)
GO_REF:0000107 		RGD
Ensembl		 PMID:16826533 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of ISO (PMID:19047045) RGD PMID:19047045 NCBI chr10:44,593,691...44,620,682
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:21547890) 		UniProt
Ensembl
RGD		 PMID:21547890 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1857799 (PMID:9389660) RGD PMID:9389660 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bgn biglycan acts_upstream_of_or_within ISO
IEA 		MGI:107942 (PMID:19932218)
GO_REF:0000107 		RGD
Ensembl		 PMID:19932218 GO_REF:0000107 NCBI chr  X:156,348,633...156,360,797
Ensembl chr  X:151,197,273...151,209,461 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079|MGI:3785162 (PMID:22359666), (PMID:22927960), (PMID:28402956) RGD PMID:22359666 PMID:22927960 PMID:28402956 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Epyc epiphycan involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:88158 (PMID:19932218) 		GO_Central
Ensembl
RGD		 PMID:19932218 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:32,436,620...32,474,326
Ensembl chr 7:32,436,620...32,474,135 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:5818514 (PMID:26098911)
GO_REF:0000107 		RGD
Ensembl		 PMID:26098911 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Ogn osteoglycin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:15,032,069...15,052,626
Ensembl chr17:15,032,069...15,052,739 		JBrowse link
G Optc opticin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:45,353,954...45,368,254
Ensembl chr13:45,355,148...45,365,237 		JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:6363078|MGI:6363079 (PMID:30659184)
GO_REF:0000107 		RGD
Ensembl		 PMID:30659184 GO_REF:0000107 NCBI chr 2:177,154,056...177,167,810
Ensembl chr 2:174,856,397...174,868,919 		JBrowse link
bronchus cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO
IEA 		MGI:2429649 (PMID:24218621)
GO_REF:0000107 		RGD
Ensembl		 PMID:24218621 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA 		MGI:3522206 (PMID:24218621)
GO_REF:0000107 		RGD
Ensembl		 PMID:24218621 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan acts_upstream_of_or_within ISO
IEA 		MGI:1856465 (PMID:3070812)
GO_REF:0000107 		RGD
Ensembl		 PMID:3070812 GO_REF:0000107 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Barx2 BARX homeobox 2 acts_upstream_of_or_within ISO
IEA 		(PMID:15800003)
GO_REF:0000107 		RGD
Ensembl		 PMID:15800003 GO_REF:0000107 NCBI chr 8:30,251,132...30,319,105
Ensembl chr 8:30,251,132...30,319,013 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO
IEA 		MGI:2158498 (PMID:10631181)
GO_REF:0000107 		RGD
Ensembl		 PMID:10631181 GO_REF:0000107 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (PMID:15305294) RGD PMID:15305294 NCBI chr 1:22,621,498...22,624,614
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Chad chondroadherin IEP RGD PMID:9461555 RGD:69806 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:79,511,931...79,515,940 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:3070812) RGD PMID:3070812 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:1857275 (PMID:3070812)
GO_REF:0000107 		RGD
Ensembl		 PMID:3070812 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO
IEA 		MGI:98726 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr 1:209,453,229...209,457,085
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Fgf6 fibroblast growth factor 6 acts_upstream_of_or_within ISO
IEA 		MGI:98726 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr 4:161,541,089...161,549,624
Ensembl chr 4:159,854,913...159,863,447 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17202865) 		Ensembl
RGD		 PMID:17202865 GO_REF:0000107 NCBI chr20:6,751,288...6,812,294
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO
IEA 		(PMID:17360777)
GO_REF:0000107 		RGD
Ensembl		 PMID:17360777 GO_REF:0000107 NCBI chr 6:41,446,683...41,452,584
Ensembl chr 6:35,717,764...35,723,590 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA 		MGI:1857219 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Otor otoraplin involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:10998416) 		GO_Central
Ensembl
RGD		 PMID:10998416 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:130,415,339...130,418,601
Ensembl chr 3:130,415,339...130,418,601 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO
IEA 		MGI:2152589 (PMID:11593033)
GO_REF:0000107 		RGD
Ensembl		 PMID:11593033 GO_REF:0000107 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11702786), (PMID:14993235) 		UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11702786), (PMID:14993235) 		UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2158693|MGI:2385468 (PMID:10319868), (PMID:12414734) 		UniProt
Ensembl
RGD		 PMID:10319868 PMID:12414734 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO
IEA 		MGI:95518|MGI:95520 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Thra thyroid hormone receptor alpha acts_upstream_of_or_within ISO MGI:1860442 (PMID:9250685) RGD PMID:9250685 NCBI chr10:84,198,141...84,225,659
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
G Uncx UNC homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1859373|MGI:1928812 (PMID:10804168), (PMID:10804169)
GO_REF:0000107 		RGD
Ensembl		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr12:15,092,779...15,097,300
Ensembl chr12:15,092,784...15,097,300 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO
IEA 		(PMID:17202865)
GO_REF:0000107 		RGD
Ensembl		 PMID:17202865 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO
IEA 		MGI:1857139 (PMID:15622513)
GO_REF:0000107 		RGD
Ensembl		 PMID:15622513 GO_REF:0000107 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:3769585 (PMID:18248096)
GO_REF:0000107 		RGD
Ensembl		 PMID:18248096 GO_REF:0000107 NCBI chr10:80,380,458...80,397,461
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEP
IEA
ISO 		mandibular condylar cartilage
GO_REF:0000107
MGI:1857275|MGI:2152978 (PMID:11680679), (PMID:8989518), (PMID:9022054) 		Ensembl
RGD		 PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 GO_REF:0000107, RGD:8661659 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21185280), (PMID:23958822)
GO_REF:0000107 		RGD
Ensembl		 PMID:21185280 PMID:23958822 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ghr growth hormone receptor IEP RGD PMID:15749813 RGD:2307373 NCBI chr 2:54,269,066...54,532,595
Ensembl chr 2:52,542,594...52,804,735 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96203 (PMID:14668414)
GO_REF:0000107 		RGD
Ensembl		 PMID:14668414 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (PMID:10545953) RGD PMID:10545953 NCBI chr 5:154,960,818...155,061,971
Ensembl chr 5:149,677,476...149,778,594 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3628798 (PMID:16537395)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537395 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO
IEA 		MGI:5317918 (PMID:22318228)
GO_REF:0000107 		RGD
Ensembl		 PMID:22318228 GO_REF:0000107 NCBI chr 8:46,312,253...46,522,444
Ensembl chr 8:46,311,989...46,522,444 		JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO
IEA 		(PMID:26249260)
GO_REF:0000107 		RGD
Ensembl		 PMID:26249260 GO_REF:0000107 NCBI chr12:47,599,161...47,638,143
Ensembl chr12:41,938,560...41,977,517 		JBrowse link
cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO
IEA 		MGI:103580 (PMID:17764670)
GO_REF:0000107 		RGD
Ensembl		 PMID:17764670 GO_REF:0000107 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO
IEA 		MGI:103577 (PMID:17764670)
GO_REF:0000107 		RGD
Ensembl		 PMID:17764670 GO_REF:0000107 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (PMID:9441679) RGD PMID:9441679 NCBI chr 4:82,632,958...82,636,851
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (PMID:17420000) RGD PMID:17420000 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766 (PMID:12489152) RGD PMID:12489152 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1096393 (PMID:17376812)
GO_REF:0000107 		RGD
Ensembl		 PMID:17376812 GO_REF:0000107 NCBI chr 3:176,667,476...176,671,965
Ensembl chr 3:156,248,485...156,252,969 		JBrowse link
G Snai2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:98330 (PMID:17376812) RGD PMID:17376812 NCBI chr11:99,686,934...99,690,349
Ensembl chr11:86,181,909...86,186,200 		JBrowse link
chondroblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IEP RGD PMID:20001227 RGD:2315747 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:9441684) RGD PMID:9441684 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO
IEA 		(PMID:17167778)
GO_REF:0000107 		RGD
Ensembl		 PMID:17167778 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Fgf4 fibroblast growth factor 4 involved_in ISO
IEA 		(PMID:17167778)
GO_REF:0000107 		RGD
Ensembl		 PMID:17167778 GO_REF:0000107 NCBI chr 1:209,453,229...209,457,085
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Gdf5 growth differentiation factor 5 involved_in ISO
IEA 		(PMID:25092592)
GO_REF:0000107 		RGD
Ensembl		 PMID:25092592 GO_REF:0000107 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO
IEA 		(PMID:10684250)
GO_REF:0000107 		RGD
Ensembl		 PMID:10684250 GO_REF:0000107 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan acts_upstream_of_or_within ISO
IEA 		MGI:1856465 (PMID:9664687)
GO_REF:0000107 		RGD
Ensembl		 PMID:9664687 GO_REF:0000107 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO
IEA 		(PMID:9442116)
GO_REF:0000107 		RGD
Ensembl		 PMID:9442116 GO_REF:0000107 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO MGI:3806990 (PMID:18539921) RGD PMID:18539921 NCBI chr 5:17,775,684...17,802,570
Ensembl chr 5:17,772,608...17,802,570 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (PMID:16079159) RGD PMID:16079159 NCBI chr 7:22,412,121...22,630,577
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO
IEA 		MGI:5007063 (PMID:22280990)
GO_REF:0000107 		RGD
Ensembl		 PMID:22280990 GO_REF:0000107 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:4100752) RGD PMID:4100752 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO
IEA 		MGI:3758741|MGI:5550566 (PMID:17588960), (PMID:22006726)
GO_REF:0000107 		RGD
Ensembl		 PMID:17588960 PMID:22006726 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Ecm1 extracellular matrix protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:20138147)
GO_REF:0000107 		RGD
Ensembl		 PMID:20138147 GO_REF:0000107 NCBI chr 2:183,287,491...183,292,729
Ensembl chr 2:183,287,322...183,292,671 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO MGI:2183829 (PMID:12865332) RGD PMID:12865332 NCBI chr 4:104,363,838...104,425,271
Ensembl chr 4:102,805,510...102,866,911 		JBrowse link
G Fgf18 fibroblast growth factor 18 acts_upstream_of_or_within ISO MGI:2178751 (PMID:17014841) RGD PMID:17014841 NCBI chr10:18,210,240...18,241,929
Ensembl chr10:17,706,174...17,736,818 		JBrowse link
G Galnt3 polypeptide N-acetylgalactosaminyltransferase 3 acts_upstream_of_or_within ISO
IEA 		(PMID:25107907)
GO_REF:0000107 		RGD
Ensembl		 PMID:25107907 GO_REF:0000107 NCBI chr 3:50,742,500...50,779,266
Ensembl chr 3:50,742,512...50,766,268 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of ISO
IEA 		MGI:96203 (PMID:14668414)
GO_REF:0000107 		RGD
Ensembl		 PMID:14668414 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO MGI:5007248 (PMID:21606205) RGD PMID:21606205 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1926381 (PMID:10742104)
GO_REF:0000107 		RGD
Ensembl		 PMID:10742104 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO
IEA 		(PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:2176466 (PMID:10213384) RGD PMID:10213384 NCBI chr 9:23,661,278...23,990,248
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:3810257 (PMID:18729207)
GO_REF:0000107 		RGD
Ensembl		 PMID:18729207 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3605739 (PMID:17481601)
GO_REF:0000107 		RGD
Ensembl		 PMID:17481601 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA 		MGI:3575405 (PMID:17591962), (PMID:24505141)
GO_REF:0000107 		RGD
Ensembl		 PMID:17591962 PMID:24505141 GO_REF:0000107 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO
IEA 		(PMID:18415932)
GO_REF:0000107 		RGD
Ensembl		 PMID:18415932 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in IEA
ISO
ISS 		GO_REF:0000104
(PMID:20479257)
GO_REF:0000024 		UniProt
RGD		 PMID:20479257 GO_REF:0000024 GO_REF:0000104 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Sulf2 sulfatase 2 involved_in ISO
IEA 		(PMID:20479257)
GO_REF:0000107
GO_REF:0000104 		RGD
Ensembl
UniProt		 PMID:20479257 GO_REF:0000104 GO_REF:0000107 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serpin family H member 1 acts_upstream_of_or_within ISO
IEA 		MGI:2176070|MGI:5505265 (PMID:22492985)
GO_REF:0000107 		RGD
Ensembl		 PMID:22492985 GO_REF:0000107 NCBI chr 1:163,055,630...163,063,177
Ensembl chr 1:153,643,510...153,650,801 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856877 (PMID:21788370)
GO_REF:0000107 		RGD
Ensembl		 PMID:21788370 GO_REF:0000107 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO
IEA 		MGI:1347346 (PMID:29618652)
GO_REF:0000107 		RGD
Ensembl		 PMID:29618652 GO_REF:0000107 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO MGI:2146046 (PMID:29618652) RGD PMID:29618652 NCBI chr 8:90,704,727...90,744,333
Ensembl chr 8:90,704,727...90,744,328 		JBrowse link
G Arid5a AT-rich interaction domain 5A acts_upstream_of_or_within ISO (PMID:21346191) RGD PMID:21346191 NCBI chr 9:38,534,612...38,549,467
Ensembl chr 9:38,534,590...38,547,597 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:16194878) 		Ensembl
RGD		 PMID:16194878 GO_REF:0000107 NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20059955)
(PMID:17481601) 		UniProt
Ensembl
RGD		 PMID:17481601 PMID:20059955 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO
IEA 		(PMID:24098149)
GO_REF:0000107 		RGD
Ensembl		 PMID:24098149 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:1927616|MGI:95688 (PMID:18363966)
GO_REF:0000107
(PMID:24098149) 		RGD
Ensembl		 PMID:18363966 PMID:24098149 GO_REF:0000107 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (PMID:15305294) RGD PMID:15305294 NCBI chr 1:22,621,498...22,624,614
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Ccn3 cellular communication network factor 3 involved_in ISO
IBA
ISS
IMP 		(PMID:21871891)
GO_REF:0000033
GO_REF:0000024 		RGD
GO_Central
UniProt		 PMID:21871891 PMID:21871891 GO_REF:0000024 GO_REF:0000033, RGD:10400852 NCBI chr 7:87,983,788...87,990,810
Ensembl chr 7:86,094,000...86,101,019 		JBrowse link
G Chrdl2 chordin-like 2 acts_upstream_of_or_within ISO (PMID:14660436) RGD PMID:14660436 NCBI chr 1:154,343,201...154,370,651
Ensembl chr 1:154,343,201...154,370,640 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain acts_upstream_of_or_within ISO MGI:2154689 (PMID:11668593) RGD PMID:11668593 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in 		IEP
IEA
ISO 		GO_REF:0000107
(PMID:9119111)
MGI:2152978 (PMID:11680679), (PMID:7590256) 		Ensembl
RGD		 PMID:7590256 PMID:9119111 PMID:11680679 PMID:21627568 GO_REF:0000107, RGD:5134342 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1857431 (PMID:31655293) RGD PMID:31655293 NCBI chr 9:54,866,646...54,902,578
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain IEP RGD PMID:8992886 RGD:1600950 NCBI chr 9:34,081,364...34,164,552
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:19767744) 		UniProt
RGD		 PMID:19767744 GO_REF:0000024 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763 		JBrowse link
G Cst5 cystatin D acts_upstream_of_or_within ISO (PMID:13679380) RGD PMID:13679380 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of ISO
IEA 		MGI:2148591|MGI:2148594|MGI:2446084|MGI:2450929 (PMID:15866163), (PMID:16818445)
GO_REF:0000107 		RGD
Ensembl		 PMID:15866163 PMID:16818445 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Cytl1 cytokine like 1 acts_upstream_of_or_within ISO
IEA 		(PMID:17644814)
GO_REF:0000107 		RGD
Ensembl		 PMID:17644814 GO_REF:0000107 NCBI chr14:73,053,876...73,058,886
Ensembl chr14:73,053,877...73,058,886 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 IEP RGD PMID:26872979 RGD:11521858 NCBI chr 3:126,770,945...126,780,769
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:20080592), (PMID:20404326), (PMID:23458899), (PMID:28768899)
GO_REF:0000107 		RGD
Ensembl		 PMID:20080592 PMID:20404326 PMID:23458899 PMID:28768899 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO
IEA 		MGI:3608690 (PMID:16236767)
GO_REF:0000107 		RGD
Ensembl		 PMID:16236767 GO_REF:0000107 NCBI chr 3:100,120,776...100,253,424
Ensembl chr 3:79,665,415...79,798,059 		JBrowse link
G Fgf18 fibroblast growth factor 18 acts_upstream_of ISO MGI:95524 (PMID:15781473) RGD PMID:15781473 NCBI chr10:18,210,240...18,241,929
Ensembl chr10:17,706,174...17,736,818 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961|MGI:95522 (PMID:17544391) RGD PMID:17544391 NCBI chr15:36,325,552...36,369,995
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:104723 (PMID:17544391)
GO_REF:0000107 		RGD
Ensembl		 PMID:17544391 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within ISO
IEA 		(PMID:15509771)
GO_REF:0000107 		RGD
Ensembl		 PMID:15509771 GO_REF:0000107 NCBI chr 6:30,017,952...30,039,269
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of ISO
IEA 		(PMID:9885252)
GO_REF:0000107 		RGD
Ensembl		 PMID:9885252 GO_REF:0000107 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1915509 (PMID:23333501) RGD PMID:23333501 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of ISO
IEA 		MGI:96533 (PMID:16284117)
GO_REF:0000107 		RGD
Ensembl		 PMID:16284117 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:15946906) 		UniProt
RGD		 PMID:15946906 GO_REF:0000024 NCBI chr17:40,084,427...40,132,035
Ensembl chr17:40,084,617...40,126,939 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 NOT|involved_in ISS
ISO 		GO_REF:0000024
(PMID:17093926) 		UniProt
RGD		 PMID:17093926 GO_REF:0000024 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA 		MGI:2386679 (PMID:15073147)
GO_REF:0000107 		RGD
Ensembl		 PMID:15073147 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
IEA
ISS 		(PMID:21484705)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:21484705 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:57,762,710...57,884,555
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of ISO
IEA 		MGI:96203 (PMID:14668414)
GO_REF:0000107 		RGD
Ensembl		 PMID:14668414 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (PMID:10545953) RGD PMID:10545953 NCBI chr 5:154,960,818...155,061,971
Ensembl chr 5:149,677,476...149,778,594 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:95728 (PMID:23333501)
GO_REF:0000107 		RGD
Ensembl		 PMID:23333501 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of
acts_upstream_of_or_within 		ISO
IEA 		MGI:1934258 (PMID:16284117)
GO_REF:0000107
(PMID:15951842) 		RGD
Ensembl		 PMID:15951842 PMID:16284117 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of ISO
IEA 		MGI:2180017 (PMID:11790802)
GO_REF:0000107 		RGD
Ensembl		 PMID:11790802 GO_REF:0000107 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:17644814)
GO_REF:0000107
(PMID:17202865) 		RGD
Ensembl		 PMID:17202865 PMID:17644814 GO_REF:0000107 NCBI chr20:6,751,288...6,812,294
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Matn1 matrilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2153042|MGI:3663272 (PMID:16877353)
GO_REF:0000107 		RGD
Ensembl		 PMID:16877353 GO_REF:0000107 NCBI chr 5:148,401,364...148,411,256
Ensembl chr 5:143,117,504...143,127,059 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:99533 (PMID:17336904) RGD PMID:17336904 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mef2d myocyte enhancer factor 2D acts_upstream_of_or_within ISO MGI:99458 (PMID:17336904) RGD PMID:17336904 NCBI chr 2:175,904,332...175,933,451
Ensembl chr 2:173,606,490...173,634,457 		JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:6,072,908...6,075,161
Ensembl chr16:6,072,833...6,075,161 		JBrowse link
G Nfib nuclear factor I/B involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:17904922) 		UniProt
Ensembl
RGD		 PMID:17904922 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO 		GO_REF:0000107
MGI:3774275 (PMID:17728275) 		Ensembl
RGD		 PMID:17728275 GO_REF:0000107 NCBI chr 5:62,678,197...62,697,360
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO
IEA 		UniProtKB:Q91ZD1 (PMID:21262216)
GO_REF:0000107 		RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA 		UniProtKB:Q9WVG7 (PMID:21262216)
GO_REF:0000107 		RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Prkca protein kinase C, alpha acts_upstream_of_or_within ISO (PMID:17644814) RGD PMID:17644814 NCBI chr10:93,388,991...93,787,617
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Pth1r parathyroid hormone 1 receptor acts_upstream_of_or_within ISO
IEA 		MGI:2154519|MGI:99829 (PMID:16476422), (PMID:9832460)
GO_REF:0000107 		RGD
Ensembl		 PMID:9832460 PMID:16476422 GO_REF:0000107 NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729 		JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of ISO MGI:2154515 (PMID:8895385) RGD PMID:8895385 NCBI chr 4:181,919,400...181,930,454
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:18638549) 		Ensembl
RGD		 PMID:18638549 GO_REF:0000107 NCBI chr15:54,780,858...54,911,989
Ensembl chr15:48,371,296...48,502,302 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Runx1 RUNX family transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:45,325,778...45,560,300
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of
acts_upstream_of_or_within 		ISO MGI:2176465 (PMID:10072783)
MGI:102672|MGI:2176466|MGI:97801 (PMID:16476422), (PMID:22916278) 		RGD PMID:10072783 PMID:16476422 PMID:22916278 NCBI chr 9:23,661,278...23,990,248
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Runx3 RUNX family transcription factor 3 acts_upstream_of_or_within
involved_in 		ISO
IBA 		MGI:99829 (PMID:22916278)
GO_REF:0000033 		RGD
GO_Central		 PMID:22916278 GO_REF:0000033 NCBI chr 5:152,644,270...152,702,835
Ensembl chr 5:147,360,994...147,419,156 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:20059955) RGD PMID:20059955 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA 		(PMID:22916278)
GO_REF:0000107 		RGD
Ensembl		 PMID:22916278 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3691857 (PMID:20515681)
GO_REF:0000107 		RGD
Ensembl		 PMID:20515681 GO_REF:0000107 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Slc26a2 solute carrier family 26 member 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:24302720) 		UniProt
Ensembl
RGD		 PMID:24302720 GO_REF:0000024 GO_REF:0000107 NCBI chr18:54,648,276...54,666,627
Ensembl chr18:54,652,951...54,666,626 		JBrowse link
G Slc39a14 solute carrier family 39 member 14 acts_upstream_of ISO
IEA 		(PMID:21445361)
GO_REF:0000107 		RGD
Ensembl		 PMID:21445361 GO_REF:0000107 NCBI chr15:51,786,517...51,833,260
Ensembl chr15:45,376,917...45,423,524 		JBrowse link
G Snx19 sorting nexin 19 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:19877062)
GO_REF:0000107 		RGD
Ensembl		 PMID:19877062 GO_REF:0000107 NCBI chr 8:28,829,881...28,867,600
Ensembl chr 8:28,829,886...28,867,061 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11702786), (PMID:14993235) 		UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11702786), (PMID:14993235) 		UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within 		ISS
IEA
ISO
IBA 		GO_REF:0000024
GO_REF:0000107
(PMID:15132997), (PMID:29644115), (PMID:32103177), (PMID:9119111)
MGI:2158693 (PMID:11371614)
MGI:2385468 (PMID:12414734)
GO_REF:0000033 		UniProt
Ensembl
RGD
GO_Central		 PMID:9119111 PMID:11371614 PMID:12414734 PMID:15132997 PMID:29644115 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:15040835) 		UniProt
Ensembl
RGD		 PMID:15040835 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tgfbi transforming growth factor, beta induced IEP RGD PMID:16546826 RGD:1599388 NCBI chr17:7,955,603...7,984,903
Ensembl chr17:7,955,603...7,985,240 		JBrowse link
G Trps1 transcriptional repressor GATA binding 1 acts_upstream_of_or_within ISO MGI:107191|MGI:95688 (PMID:18363966) RGD PMID:18363966 NCBI chr 7:81,916,668...82,142,733
Ensembl chr 7:81,921,601...82,141,905 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO
IEA 		MGI:3044357 (PMID:14681194)
GO_REF:0000107 		RGD
Ensembl		 PMID:14681194 GO_REF:0000107 NCBI chr 9:105,533,116...105,567,460
Ensembl chr 9:105,533,136...105,567,479 		JBrowse link
G Wnt10b Wnt family member 10B involved_in ISO
IEA 		(PMID:15135146)
GO_REF:0000107 		RGD
Ensembl		 PMID:15135146 GO_REF:0000107 NCBI chr 7:131,801,046...131,806,850
Ensembl chr 7:129,922,088...129,927,892 		JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO
IEA 		(PMID:15135146)
GO_REF:0000107 		RGD
Ensembl		 PMID:15135146 GO_REF:0000107 NCBI chr 2:195,142,573...195,156,945
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
G Wnt5b Wnt family member 5B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 4:154,281,852...154,406,081
Ensembl chr 4:152,609,569...152,733,407 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO
IEA 		(PMID:17202865)
GO_REF:0000107 		RGD
Ensembl		 PMID:17202865 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of ISO MGI:3701350|MGI:88276 (PMID:16818445) RGD PMID:16818445 NCBI chr10:44,593,691...44,620,682
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3579503 (PMID:19623616)
GO_REF:0000107 		RGD
Ensembl		 PMID:19623616 GO_REF:0000107 NCBI chr10:94,393,379...94,426,579
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:29545125) RGD PMID:29545125 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		(PMID:25639508)
GO_REF:0000107 		RGD
Ensembl		 PMID:25639508 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 acts_upstream_of_or_within ISO MGI:5698367 (PMID:25639508) RGD PMID:25639508 NCBI chr 1:163,831,876...163,899,925
Ensembl chr 1:163,832,015...163,899,393 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
IEA
ISS 		(PMID:20676705)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:20676705 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO
IEA 		MGI:4829605 (PMID:20089971)
GO_REF:0000107 		RGD
Ensembl		 PMID:20089971 GO_REF:0000107 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:23958822)
GO_REF:0000107 		RGD
Ensembl		 PMID:23958822 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Mex3c mex-3 RNA binding family member C acts_upstream_of_or_within ISO
IEA 		MGI:3764947 (PMID:22357625)
GO_REF:0000107 		RGD
Ensembl		 PMID:22357625 GO_REF:0000107 NCBI chr18:67,167,600...67,188,595
Ensembl chr18:67,166,718...67,188,595 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:21367821) 		UniProt
Ensembl
RGD		 PMID:21367821 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO
IEA 		(PMID:16377640)
GO_REF:0000107 		RGD
Ensembl		 PMID:16377640 GO_REF:0000107 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264 		JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:5315593 (PMID:22206015)
GO_REF:0000107 		RGD
Ensembl		 PMID:22206015 GO_REF:0000107 NCBI chr 5:76,647,302...76,765,989
Ensembl chr 5:76,647,429...76,765,174 		JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within ISO
IEA 		MGI:2135614 (PMID:26496357)
GO_REF:0000107 		RGD
Ensembl		 PMID:26496357 GO_REF:0000107 NCBI chr 8:115,801,335...115,869,812
Ensembl chr 8:106,922,978...106,991,089 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO MGI:1857283 (PMID:18638549) RGD PMID:18638549 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:5818514 (PMID:26098911)
GO_REF:0000107 		RGD
Ensembl		 PMID:26098911 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Nppc natriuretic peptide C involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11259675) 		UniProt
Ensembl
RGD		 PMID:11259675 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251 		JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO
IEA 		(PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:22421045) 		UniProt
Ensembl
RGD		 PMID:22421045 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:2384513 (PMID:21420963)
GO_REF:0000107 		RGD
Ensembl		 PMID:21420963 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn1 matrilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2153042|MGI:3663272 (PMID:16877353)
GO_REF:0000107 		RGD
Ensembl		 PMID:16877353 GO_REF:0000107 NCBI chr 5:148,401,364...148,411,256
Ensembl chr 5:143,117,504...143,127,059 		JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO MGI:1857283 (PMID:18638549) RGD PMID:18638549 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO
IEA 		(PMID:19113921)
GO_REF:0000107 		RGD
Ensembl		 PMID:19113921 GO_REF:0000107 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Nppc natriuretic peptide C involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11259675) 		UniProt
Ensembl
RGD		 PMID:11259675 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251 		JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain IEP spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469|MGI:98737|MGI:98739 (PMID:18191556), (PMID:18467703) RGD PMID:18191556 PMID:18467703 NCBI chr 9:34,081,364...34,164,552
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO
IEA 		MGI:2180787|MGI:3758741|MGI:88465|MGI:98737|MGI:98739 (PMID:17588960), (PMID:18191556), (PMID:18467703)
GO_REF:0000107 		RGD
Ensembl		 PMID:17588960 PMID:18191556 PMID:18467703 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within ISO
IEA 		(PMID:15509771)
GO_REF:0000107 		RGD
Ensembl		 PMID:15509771 GO_REF:0000107 NCBI chr 6:30,017,952...30,039,269
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:5818514 (PMID:26098911), (PMID:32227389)
GO_REF:0000107 		RGD
Ensembl		 PMID:26098911 PMID:32227389 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Mmp13 matrix metallopeptidase 13 acts_upstream_of_or_within ISO
IEA 		MGI:98729 (PMID:21444811)
GO_REF:0000107 		RGD
Ensembl		 PMID:21444811 GO_REF:0000107 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO 		GO_REF:0000107
MGI:3774275|MGI:4358115 (PMID:17728275), (PMID:23065701) 		Ensembl
RGD		 PMID:17728275 PMID:23065701 GO_REF:0000107 NCBI chr 5:62,678,197...62,697,360
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO
IEA 		MGI:97858 (PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO
IEA 		MGI:97858 (PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		MGI:97856|MGI:97857 (PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:1340026 (PMID:21420963)
GO_REF:0000107 		RGD
Ensembl		 PMID:21420963 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Thbs1 thrombospondin 1 acts_upstream_of_or_within ISO MGI:2154534|MGI:88465|MGI:88469|MGI:98739 (PMID:18467703) RGD PMID:18467703 NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO
IEA 		MGI:3581964|MGI:88465|MGI:88469|MGI:98737 (PMID:18467703)
GO_REF:0000107 		RGD
Ensembl		 PMID:18467703 GO_REF:0000107 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:174,621,812...174,633,594 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO
IEA 		MGI:2180033 (PMID:11923874)
GO_REF:0000107 		RGD
Ensembl		 PMID:11923874 GO_REF:0000107 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
mandibular condyle articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within IEP
ISO 		MGI:2653208 (PMID:23900597) RGD PMID:23900597 PMID:20097540 RGD:15039407 NCBI chr14:5,870,232...5,876,339
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
negative regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsk cathepsin K acts_upstream_of_or_within ISO MGI:2182131 (PMID:19834056) RGD PMID:19834056 NCBI chr 2:185,747,548...185,758,512
Ensembl chr 2:183,058,569...183,069,550 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO
IEA 		MGI:98958 (PMID:18991062)
GO_REF:0000107 		RGD
Ensembl		 PMID:18991062 GO_REF:0000107 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:65,332,277...65,365,208 		JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (PMID:19834056) RGD PMID:19834056 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522 		JBrowse link
G Lep leptin IDA RGD PMID:19876764 RGD:5128612 NCBI chr 4:58,626,529...58,640,663
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Mir21 microRNA 21 involved_in ISO (PMID:24577233) RGD PMID:24577233 NCBI chr10:71,902,600...71,902,691
Ensembl chr10:71,405,257...71,405,348 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA 		(PMID:10684250)
GO_REF:0000107 		RGD
Ensembl		 PMID:10684250 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO
IEA 		(PMID:10684250)
GO_REF:0000107 		RGD
Ensembl		 PMID:10684250 GO_REF:0000107 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO
IEA 		(PMID:10684250)
GO_REF:0000107 		RGD
Ensembl		 PMID:10684250 GO_REF:0000107 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		(PMID:10684250)
GO_REF:0000107 		RGD
Ensembl		 PMID:10684250 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO
IEA 		MGI:1888389 (PMID:21780244)
GO_REF:0000107 		RGD
Ensembl		 PMID:21780244 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (PMID:19047045) RGD PMID:19047045 NCBI chr10:44,593,691...44,620,682
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
negative regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within ISO (PMID:90087) RGD PMID:90087 NCBI chr 4:181,919,400...181,930,454
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Rflna refilin A involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:1923816 (PMID:24436304) 		GO_Central
RGD		 PMID:24436304 GO_REF:0000033 NCBI chr12:31,633,360...31,642,313
Ensembl chr12:31,633,361...31,642,317 		JBrowse link
G Rflnb refilin B involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1920371 (PMID:24436304) 		GO_Central
Ensembl
RGD		 PMID:24436304 GO_REF:0000033 GO_REF:0000107 NCBI chr10:60,893,693...60,899,970
Ensembl chr10:60,893,713...60,899,976 		JBrowse link
negative regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO
IEA 		(PMID:22247065)
GO_REF:0000107 		RGD
Ensembl		 PMID:22247065 GO_REF:0000107 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO (PMID:22247065) RGD PMID:22247065 NCBI chr 8:90,704,727...90,744,333
Ensembl chr 8:90,704,727...90,744,328 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:17481601)
GO_REF:0000107 		RGD
Ensembl		 PMID:17481601 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Ccn4 cellular communication network factor 4 involved_in ISO (PMID:15331410) RGD PMID:15331410 NCBI chr 7:100,534,578...100,566,287
Ensembl chr 7:98,645,182...98,677,248 		JBrowse link
G Chadl chondroadherin-like involved_in ISO
IEA 		(PMID:25451920)
GO_REF:0000107 		RGD
Ensembl		 PMID:25451920 GO_REF:0000107 NCBI chr 7:113,205,323...113,218,678
Ensembl chr 7:113,210,748...113,217,272 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148591|MGI:2148594|MGI:2446084|MGI:2450929 (PMID:15866163), (PMID:16818445)
GO_REF:0000107 		RGD
Ensembl		 PMID:15866163 PMID:16818445 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA
ISS 		(PMID:20005202)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:20005202 GO_REF:0000024 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Gdf5 growth differentiation factor 5 involved_in ISO
IEA 		(PMID:21976273)
GO_REF:0000107 		RGD
Ensembl		 PMID:21976273 GO_REF:0000107 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:17328886) RGD PMID:17328886 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:96533 (PMID:16284117)
GO_REF:0000107 		RGD
Ensembl		 PMID:16284117 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:10556075) RGD PMID:10556075 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1934258 (PMID:16284117)
GO_REF:0000107 		RGD
Ensembl		 PMID:16284117 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:2180017 (PMID:11790802)
GO_REF:0000107 		RGD
Ensembl		 PMID:11790802 GO_REF:0000107 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975 		JBrowse link
G Mkx mohawk homeobox IMP RGD PMID:27370800 RGD:40924660 NCBI chr17:55,077,073...55,156,877
Ensembl chr17:55,077,540...55,156,124 		JBrowse link
G Nkx3-2 NK3 homeobox 2 involved_in ISO
IEA 		(PMID:16421188)
GO_REF:0000107 		RGD
Ensembl		 PMID:16421188 GO_REF:0000107 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061 		JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:36905926) 		UniProt
Ensembl
RGD		 PMID:36905926 GO_REF:0000024 GO_REF:0000107 NCBI chr13:50,865,253...50,985,107
Ensembl chr13:48,316,301...48,433,326 		JBrowse link
G Pth parathyroid hormone involved_in IMP PMID:11604398 CAFA PMID:11604398 RGD:12793028 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530 		JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within ISO (PMID:90087)
MGI:2154515|MGI:95728 (PMID:17328886), (PMID:8895385) 		RGD PMID:90087 PMID:8895385 PMID:17328886 NCBI chr 4:181,919,400...181,930,454
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:29644115)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:29644115 GO_REF:0000024 GO_REF:0000107 NCBI chr12:41,026,079...41,085,577
Ensembl chr12:35,383,144...35,424,925 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO
IEA 		(PMID:10684250)
GO_REF:0000107 		RGD
Ensembl		 PMID:10684250 GO_REF:0000107 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		(PMID:10684250)
GO_REF:0000107 		RGD
Ensembl		 PMID:10684250 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:19756381) RGD PMID:19756381 NCBI chr11:99,686,934...99,690,349
Ensembl chr11:86,181,909...86,186,200 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2158693 (PMID:11371614) 		UniProt
Ensembl
RGD		 PMID:11371614 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19494318) 		Ensembl
RGD		 PMID:19494318 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO MGI:3701350|MGI:88276 (PMID:16818445) RGD PMID:16818445 NCBI chr10:44,593,691...44,620,682
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:26972716) RGD PMID:26972716 NCBI chr14:5,870,232...5,876,339
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
positive regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp1 bone morphogenetic protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:3201241)
GO_REF:0000107 		RGD
Ensembl		 PMID:3201241 GO_REF:0000107 NCBI chr15:45,551,603...45,595,862
Ensembl chr15:45,551,603...45,595,776 		JBrowse link
G Bmp10 bone morphogenetic protein 10 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19956691) 		Ensembl
RGD		 PMID:19956691 GO_REF:0000107 NCBI chr 4:119,872,066...119,877,694
Ensembl chr 4:119,872,045...119,878,627 		JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO
IEA 		(PMID:3201241)
GO_REF:0000107
(PMID:10684250) 		RGD
Ensembl		 PMID:3201241 PMID:10684250 GO_REF:0000107 NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:3201241)
GO_REF:0000107 		RGD
Ensembl		 PMID:3201241 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:9441684) RGD PMID:9441684 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Gdf2 growth differentiation factor 2 involved_in ISO
IEA 		(PMID:19956691)
GO_REF:0000107 		RGD
Ensembl		 PMID:19956691 GO_REF:0000107 NCBI chr16:9,261,679...9,267,678
Ensembl chr16:9,255,430...9,261,429 		JBrowse link
G Mdk midkine involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:25551381)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:25551381 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:98,356,789...98,358,960
Ensembl chr 3:77,901,158...77,903,130 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:10477299) RGD PMID:10477299 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Smad1 SMAD family member 1 acts_upstream_of_or_within ISO
IEA 		(PMID:19251704)
GO_REF:0000107 		RGD
Ensembl		 PMID:19251704 GO_REF:0000107 NCBI chr19:45,417,430...45,477,962
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO
IEA 		(PMID:21401405)
GO_REF:0000107 		RGD
Ensembl		 PMID:21401405 GO_REF:0000107 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO
IEA 		(PMID:21401405)
GO_REF:0000107 		RGD
Ensembl		 PMID:21401405 GO_REF:0000107 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISO
IEA
ISS 		(PMID:21401405), (PMID:29503843)
GO_REF:0000107
(PMID:19047045)
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:19047045 PMID:21401405 PMID:29503843 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		(PMID:18991062)
GO_REF:0000107 		RGD
Ensembl		 PMID:18991062 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISO
IEA
ISS 		(PMID:21547890)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:21547890 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
positive regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96203 (PMID:14668414)
GO_REF:0000107 		RGD
Ensembl		 PMID:14668414 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
positive regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp6 bone morphogenetic protein 6 IDA RGD PMID:23077084 RGD:7242190 NCBI chr17:26,523,704...26,785,558
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Fgf18 fibroblast growth factor 18 acts_upstream_of_or_within ISO MGI:95524 (PMID:15781473) RGD PMID:15781473 NCBI chr10:18,210,240...18,241,929
Ensembl chr10:17,706,174...17,736,818 		JBrowse link
G Gdf5 growth differentiation factor 5 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:21976273), (PMID:24098149)
GO_REF:0000107
MGI:1927616 (PMID:18363966), (PMID:9885252) 		RGD
Ensembl		 PMID:9885252 PMID:18363966 PMID:21976273 PMID:24098149 GO_REF:0000107 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Gdf6 growth differentiation factor 6 involved_in ISO
ISS 		(PMID:26643732)
GO_REF:0000024 		RGD
UniProt		 PMID:26643732 GO_REF:0000024 NCBI chr 5:22,996,246...23,012,567
Ensembl chr 5:22,996,246...23,012,567 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:17328886)
GO_REF:0000107 		RGD
Ensembl		 PMID:17328886 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96203 (PMID:14668414)
GO_REF:0000107 		RGD
Ensembl		 PMID:14668414 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:21071451)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:21071451 GO_REF:0000024 GO_REF:0000107 NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067 		JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:19410023)
GO_REF:0000107 		RGD
Ensembl		 PMID:19410023 GO_REF:0000107 NCBI chr16:6,072,908...6,075,161
Ensembl chr16:6,072,833...6,075,161 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO
IEA 		(PMID:19097194), (PMID:19465597)
GO_REF:0000107 		RGD
Ensembl		 PMID:19097194 PMID:19465597 GO_REF:0000107 NCBI chr 6:11,455,686...11,465,002
Ensembl chr 6:11,455,686...11,465,556 		JBrowse link
G Por cytochrome p450 oxidoreductase IMP RGD PMID:19264869 RGD:2316785 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245 		JBrowse link
G Prkg2 protein kinase cGMP-dependent 2 IGI RGD PMID:15466490 RGD:150429792 NCBI chr14:10,559,882...10,668,479
Ensembl chr14:10,559,882...10,666,888 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit IMP RGD PMID:17884819 RGD:2298851 NCBI chr 1:212,354,336...212,364,815
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:2176465 (PMID:10072783) RGD PMID:10072783 NCBI chr 9:23,661,278...23,990,248
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Smad3 SMAD family member 3 involved_in ISO
IEA 		(PMID:21035443)
GO_REF:0000107 		RGD
Ensembl		 PMID:21035443 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO
IEA
IBA 		(PMID:21401405)
GO_REF:0000107
(PMID:20940257)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20940257 PMID:21401405 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO
IBA
IEA 		(PMID:21401405)
(PMID:20940257)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:20940257 PMID:21401405 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
IEA
IBA
ISS 		(PMID:20676705), (PMID:21401405)
GO_REF:0000107
(PMID:20940257), (PMID:21367821)
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:20676705 PMID:20940257 PMID:21367821 PMID:21401405 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Thrb thyroid hormone receptor beta IDA RGD PMID:15647824 RGD:1601663 NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISO
IEA
ISS 		(PMID:21547890)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:21547890 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zfp219 zinc finger protein 219 involved_in ISO
IEA 		(PMID:20940257)
GO_REF:0000107 		RGD
Ensembl		 PMID:20940257 GO_REF:0000107 NCBI chr15:24,695,831...24,710,039
Ensembl chr15:24,695,837...24,710,030 		JBrowse link
positive regulation of chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad7 SMAD family member 7 involved_in IEA
ISO 		GO_REF:0000107
(PMID:29503843) 		Ensembl
RGD		 PMID:29503843 GO_REF:0000107 NCBI chr18:71,263,508...71,291,849
Ensembl chr18:68,988,429...69,016,765 		JBrowse link
positive regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Por cytochrome p450 oxidoreductase IMP positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245 		JBrowse link
regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:20501701)
GO_REF:0000107 		RGD
Ensembl		 PMID:20501701 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO
IEA 		(PMID:30424580)
GO_REF:0000107 		RGD
Ensembl		 PMID:30424580 GO_REF:0000107 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:18802027) RGD PMID:18802027 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA 		(PMID:24505141)
GO_REF:0000107 		RGD
Ensembl		 PMID:24505141 GO_REF:0000107 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:20501701)
GO_REF:0000107 		RGD
Ensembl		 PMID:20501701 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3579503 (PMID:19623616)
GO_REF:0000107 		RGD
Ensembl		 PMID:19623616 GO_REF:0000107 NCBI chr10:94,393,379...94,426,579
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Rflna refilin A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:31,633,360...31,642,313
Ensembl chr12:31,633,361...31,642,317 		JBrowse link
G Rflnb refilin B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:60,893,693...60,899,970
Ensembl chr10:60,893,713...60,899,976 		JBrowse link
regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO MGI:2663631 (PMID:18597638) RGD PMID:18597638 NCBI chr 1:22,621,498...22,624,614
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Glg1 golgi glycoprotein 1 acts_upstream_of_or_within ISO
IEA 		MGI:4829764 (PMID:20530870)
GO_REF:0000107 		RGD
Ensembl		 PMID:20530870 GO_REF:0000107 NCBI chr19:39,124,892...39,224,178
Ensembl chr19:39,124,641...39,224,178 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96203 (PMID:22916278)
GO_REF:0000107 		RGD
Ensembl		 PMID:22916278 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:22916278) RGD PMID:22916278 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO
IEA 		(PMID:22916278)
GO_REF:0000107 		RGD
Ensembl		 PMID:22916278 GO_REF:0000107 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO MGI:2148636 (PMID:14512017) RGD PMID:14512017 NCBI chr19:60,259,200...60,622,145
Ensembl chr19:43,360,342...43,712,365 		JBrowse link
G Mboat2 membrane bound O-acyltransferase domain containing 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:29196633) 		UniProt
Ensembl
RGD		 PMID:29196633 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:41,471,135...41,597,599
Ensembl chr 6:41,471,161...41,593,485 		JBrowse link
G Mdk midkine involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:25551381)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:25551381 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:98,356,789...98,358,960
Ensembl chr 3:77,901,158...77,903,130 		JBrowse link
G Pthlh parathyroid hormone-like hormone involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:181,919,400...181,930,454
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3628798 (PMID:16537395)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537395 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO
IEA 		(PMID:20515681)
GO_REF:0000107 		RGD
Ensembl		 PMID:20515681 GO_REF:0000107 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Trps1 transcriptional repressor GATA binding 1 involved_in ISO (PMID:19389374) RGD PMID:19389374 NCBI chr 7:81,916,668...82,142,733
Ensembl chr 7:81,921,601...82,141,905 		JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO MGI:2663959 (PMID:19725955) RGD PMID:19725955 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
trachea cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO
IEA 		MGI:1857622 (PMID:9376317)
GO_REF:0000107 		RGD
Ensembl		 PMID:9376317 GO_REF:0000107 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		MGI:1931079 (PMID:8388780)
GO_REF:0000107 		RGD
Ensembl		 PMID:8388780 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO
IEA 		MGI:2429649 (PMID:24218621)
GO_REF:0000107 		RGD
Ensembl		 PMID:24218621 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA 		MGI:3522206 (PMID:24218621)
GO_REF:0000107 		RGD
Ensembl		 PMID:24218621 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
trachea cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (PMID:9441679) RGD PMID:9441679 NCBI chr 4:82,632,958...82,636,851
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1922667 (PMID:18256198) RGD PMID:18256198 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:18256198)
GO_REF:0000107 		RGD
Ensembl		 PMID:18256198 GO_REF:0000107 NCBI chr 7:74,096,378...74,239,398
Ensembl chr 7:74,103,090...74,238,933 		JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO MGI:3793280 (PMID:18367557) RGD PMID:18367557 NCBI chr 7:118,514,684...118,559,316
Ensembl chr 7:116,634,814...116,679,581 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        animal organ development 3718
          cartilage development 238
            articular cartilage development + 8
            bronchus cartilage development + 2
            cartilage condensation + 23
            cartilage development involved in endochondral bone morphogenesis + 43
            cartilage morphogenesis + 12
            chondroblast differentiation 6
            chondrocyte differentiation + 132
            negative regulation of cartilage development + 35
            positive regulation of cartilage development + 33
            regulation of cartilage development + 76
            trachea cartilage development + 8
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            skeletal system development 594
              cartilage development 238
                articular cartilage development + 8
                bronchus cartilage development + 2
                cartilage condensation + 23
                cartilage development involved in endochondral bone morphogenesis + 43
                cartilage morphogenesis + 12
                chondroblast differentiation 6
                chondrocyte differentiation + 132
                negative regulation of cartilage development + 35
                positive regulation of cartilage development + 33
                regulation of cartilage development + 76
                trachea cartilage development + 8
paths to the root