Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:cofactor biosynthetic process
go back to main search page
Accession:GO:0051188 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a cofactor, a substance that is required for the activity of an enzyme or other protein.
Synonyms:exact_synonym: cofactor anabolism;   cofactor biosynthesis;   cofactor formation;   cofactor synthesis


show annotations for term's descendants       view all columns           Sort by:
 
'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afmid arylformamidase JBrowse link 10 106,828,963 106,844,314 RGD:1600115
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link 6 7,045,145 7,059,227 RGD:13792537
RGD:1600115
G Ido1 indoleamine 2,3-dioxygenase 1 JBrowse link 16 72,216,326 72,228,098 RGD:13792537
G Ido2 indoleamine 2,3-dioxygenase 2 JBrowse link 16 72,232,852 72,291,227 RGD:13792537
G Kmo kynurenine 3-monooxygenase JBrowse link 13 93,684,324 93,715,378 RGD:1600115
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:1600115
10-formyltetrahydrofolate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC680432 similar to methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase JBrowse link 3 121,490,787 121,493,932 RGD:13792537
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link 6 99,282,850 99,350,367 RGD:1624291
RGD:13792537
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like JBrowse link 1 40,529,092 40,719,232 RGD:1624291
RGD:13792537
7,8-dihydroneopterin 3'-triphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gch1 GTP cyclohydrolase 1 JBrowse link 15 23,935,011 23,968,971 RGD:1600115
[2Fe-2S] cluster assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bola2 bolA family member 2 JBrowse link 1 198,120,104 198,121,158 RGD:1624291
G Glrx3 glutaredoxin 3 JBrowse link 1 209,768,696 209,799,912 RGD:1624291
RGD:1600115
G Hscb HscB mitochondrial iron-sulfur cluster co-chaperone JBrowse link 12 51,878,267 51,888,645 RGD:13792537
G Nfs1 NFS1 cysteine desulfurase JBrowse link 3 151,665,813 151,688,151 RGD:1600115
acetyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link 8 58,166,990 58,195,884 RGD:1624291
G Acly ATP citrate lyase JBrowse link 10 88,392,248 88,442,845 RGD:631761
RGD:13792537
RGD:1600115
RGD:1624291
G Acss1 acyl-CoA synthetase short-chain family member 1 JBrowse link 3 146,420,346 146,470,293 RGD:1624291
G Acss2 acyl-CoA synthetase short-chain family member 2 JBrowse link 3 151,032,925 151,075,856 RGD:1624291
G Mlycd malonyl-CoA decarboxylase JBrowse link 19 52,032,950 52,048,773 RGD:1600790
RGD:13792537
RGD:1624291
RGD:1600115
G Ppcs phosphopantothenoylcysteine synthetase JBrowse link 5 138,466,298 138,470,108 RGD:1624291
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acss1 acyl-CoA synthetase short-chain family member 1 JBrowse link 3 146,420,346 146,470,293 RGD:1600115
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlat dihydrolipoamide S-acetyltransferase JBrowse link 8 55,062,549 55,087,832 RGD:1599112
G Dld dihydrolipoamide dehydrogenase JBrowse link 6 50,597,677 50,618,694 RGD:1599112
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 JBrowse link X 37,329,779 37,343,410 RGD:1599112
RGD:13792537
RGD:1624291
RGD:1600115
G Pdha1l1 pyruvate dehydrogenase (lipoamide) alpha 1-like 1 JBrowse link 16 88,344,440 88,347,335 RGD:1600115
G Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 JBrowse link 2 246,736,449 246,737,997 RGD:1599112
RGD:13792537
G Pdhb pyruvate dehydrogenase E1 subunit beta JBrowse link 15 18,540,826 18,546,855 RGD:1599112
RGD:13792537
RGD:1624291
RGD:1600115
G Pdhx pyruvate dehydrogenase complex, component X JBrowse link 3 92,910,300 92,933,725 RGD:1600115
G Pdk4 pyruvate dehydrogenase kinase 4 JBrowse link 4 30,546,772 30,556,774 RGD:729541
coenzyme A biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link 8 58,166,990 58,195,884 RGD:1624291
G Acot7 acyl-CoA thioesterase 7 JBrowse link 5 169,357,582 169,450,215 RGD:1624291
G Ak6 adenylate kinase 6 JBrowse link 2 30,664,407 30,676,464 RGD:1600115
G Coasy Coenzyme A synthase JBrowse link 10 88,992,413 88,996,677 RGD:1624291
RGD:13792537
G Dcakd dephospho-CoA kinase domain containing JBrowse link 10 91,095,601 91,126,733 RGD:13792537
G Pank1 pantothenate kinase 1 JBrowse link 1 253,115,400 253,189,643 RGD:1624291
RGD:13792537
G Pank2 pantothenate kinase 2 JBrowse link 3 123,807,911 123,841,797 RGD:1624291
RGD:13792537
G Pank3 pantothenate kinase 3 JBrowse link 10 20,591,432 20,615,258 RGD:1624291
RGD:13792537
G Pank4 pantothenate kinase 4 JBrowse link 5 172,367,593 172,384,077 RGD:13792537
RGD:1600115
G Ppcdc phosphopantothenoylcysteine decarboxylase JBrowse link 8 62,191,722 62,219,434 RGD:1624291
G Ppcs phosphopantothenoylcysteine synthetase JBrowse link 5 138,466,298 138,470,108 RGD:1624291
coenzyme biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mmadhc metabolism of cobalamin associated D JBrowse link 3 35,783,511 35,801,474 RGD:1624291
RGD:1600115
FAD biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Flad1 flavin adenine dinucleotide synthetase 1 JBrowse link 2 188,726,994 188,736,462 RGD:1600115
RGD:13792537
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcdh glutaryl-CoA dehydrogenase JBrowse link 19 26,000,497 26,006,970 RGD:1598697
FMN biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rfk riboflavin kinase JBrowse link 1 236,494,221 236,501,733 RGD:13792537
folic acid-containing compound biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fpgs folylpolyglutamate synthase JBrowse link 3 11,717,667 11,729,694 RGD:13792537
G Mthfs methenyltetrahydrofolate synthetase JBrowse link 8 96,564,877 96,614,386 RGD:13792537
glutathione biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gclc glutamate-cysteine ligase, catalytic subunit JBrowse link 8 85,059,051 85,097,471 RGD:1582661
RGD:13792537
RGD:1624291
RGD:1600115
G Gclm glutamate cysteine ligase, modifier subunit JBrowse link 2 225,827,504 225,847,876 RGD:1582661
RGD:13792537
RGD:1624291
RGD:1600115
G Ggt1 gamma-glutamyltransferase 1 JBrowse link 20 14,019,723 14,045,781 RGD:1624291
G Ggt5 gamma-glutamyltransferase 5 JBrowse link 20 13,988,444 14,001,296 RGD:1600115
G Ggt6 gamma-glutamyl transferase 6 JBrowse link 10 58,995,253 58,998,431 RGD:1600115
G Ggt7 gamma-glutamyltransferase 7 JBrowse link 3 151,005,960 151,029,941 RGD:1600115
G Gss glutathione synthetase JBrowse link 3 151,076,254 151,106,557 RGD:1599340
RGD:1600115
G Hagh hydroxyacyl glutathione hydrolase JBrowse link 10 14,215,913 14,230,506 RGD:1600115
RGD:1624291
G Mgst2 microsomal glutathione S-transferase 2 JBrowse link 2 140,708,396 140,727,381 RGD:1624291
heme A biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 JBrowse link 10 50,439,778 50,563,920 RGD:1624291
G Cox15 cytochrome c oxidase assembly homolog COX15 JBrowse link 1 263,494,850 263,511,510 RGD:1624291
RGD:13792537
heme biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alad aminolevulinate dehydratase JBrowse link 5 78,368,867 78,379,206 RGD:1599020
RGD:13792537
RGD:1624291
RGD:1600115
G Alas2 5'-aminolevulinate synthase 2 JBrowse link X 23,167,576 23,187,356 RGD:1624291
RGD:1600115
G Atp5if1 ATP synthase inhibitory factor subunit 1 JBrowse link 5 150,719,570 150,723,287 RGD:1624291
RGD:13792537
RGD:1600115
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 JBrowse link 10 50,439,778 50,563,920 RGD:13792537
G Cpox coproporphyrinogen oxidase JBrowse link 11 44,039,665 44,049,648 RGD:1600961
RGD:1624291
G Fech ferrochelatase JBrowse link 18 59,941,992 59,975,192 RGD:1600961
RGD:1624291
RGD:13792537
G Fxn frataxin JBrowse link 1 242,123,975 242,152,834 RGD:1600115
G Hmbs hydroxymethylbilane synthase JBrowse link 8 48,667,278 48,674,673 RGD:13792537
G Hnf1a HNF1 homeobox A JBrowse link 12 47,407,811 47,433,342 RGD:1624291
G Pgrmc1 progesterone receptor membrane component 1 JBrowse link X 123,205,869 123,213,880 RGD:1600115
RGD:1624291
G Ppox protoporphyrinogen oxidase JBrowse link 13 89,650,094 89,654,998 RGD:1600961
RGD:13792537
RGD:1624291
G Slc11a2 solute carrier family 11 member 2 JBrowse link 7 142,025,812 142,062,892 RGD:1624291
RGD:1600115
G Slc25a39 solute carrier family 25, member 39 JBrowse link 10 90,351,899 90,356,905 RGD:1600115
G Tmem14c transmembrane protein 14C JBrowse link 17 21,571,510 21,577,651 RGD:1600115
G Urod uroporphyrinogen decarboxylase JBrowse link 5 135,855,429 135,859,515 RGD:70052
RGD:13792537
RGD:1624291
RGD:2301379
G Uros uroporphyrinogen III synthase JBrowse link 1 205,755,766 205,778,170 RGD:1624291
RGD:13792537
heme O biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 JBrowse link 10 50,439,778 50,563,920 RGD:1600115
hydrogen peroxide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyba cytochrome b-245 alpha chain JBrowse link 19 55,249,634 55,257,824 RGD:2317869
G Cybb cytochrome b-245 beta chain JBrowse link X 14,578,330 14,610,049 RGD:1624291
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:1624291
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 JBrowse link 8 62,451,360 62,458,244 RGD:1624291
G Duox1 dual oxidase 1 JBrowse link 3 114,251,794 114,286,827 RGD:1600115
RGD:1624291
G Duox2 dual oxidase 2 JBrowse link 3 114,218,187 114,237,808 RGD:1600115
RGD:1624291
G Ncf1 neutrophil cytosolic factor 1 JBrowse link 12 25,497,104 25,506,300 RGD:1624291
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:1581090
RGD:1600115
RGD:1624291
RGD:1601266
RGD:634854
G Sod2 superoxide dismutase 2 JBrowse link 1 47,914,757 47,921,587 RGD:2291946
iron incorporation into metallo-sulfur cluster term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fxn frataxin JBrowse link 1 242,123,975 242,152,834 RGD:1624291
RGD:1600115
RGD:13792537
G Nfs1 NFS1 cysteine desulfurase JBrowse link 3 151,665,813 151,688,151 RGD:1624291
iron-sulfur cluster assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ciao1 cytosolic iron-sulfur assembly component 1 JBrowse link 3 119,671,778 119,677,324 RGD:1600115
RGD:13792537
RGD:1624291
G Ciao2a cytosolic iron-sulfur assembly component 2A JBrowse link 8 71,786,336 71,798,258 RGD:1624291
G Ciao2b cytosolic iron-sulfur assembly component 2B JBrowse link 19 551,708 553,573 RGD:1624291
RGD:13792537
G Ciao3 cytosolic iron-sulfur assembly component 3 JBrowse link 10 15,143,732 15,152,706 RGD:1624291
RGD:13792537
RGD:1600115
G Ciapin1 cytokine induced apoptosis inhibitor 1 JBrowse link 19 10,596,923 10,612,414 RGD:13792537
G Fxn frataxin JBrowse link 1 242,123,975 242,152,834 RGD:1600115
RGD:1624291
G Hscb HscB mitochondrial iron-sulfur cluster co-chaperone JBrowse link 12 51,878,267 51,888,645 RGD:1624291
G Hspa9 heat shock protein family A (Hsp70) member 9 JBrowse link 18 27,731,072 27,749,235 RGD:1600115
RGD:1624291
G Iba57 iron-sulfur cluster assembly factor IBA57 JBrowse link 10 45,506,124 45,514,909 RGD:13792537
G Isca1 iron-sulfur cluster assembly 1 JBrowse link 17 5,281,727 5,294,386 RGD:13792537
G Isca2 iron-sulfur cluster assembly 2 JBrowse link 6 108,488,678 108,490,188 RGD:13792537
G Iscu iron-sulfur cluster assembly enzyme JBrowse link 12 48,621,454 48,627,297 RGD:1600115
G Lyrm4 LYR motif containing 4 JBrowse link 17 29,439,042 29,552,773 RGD:13792537
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component JBrowse link 1 261,191,646 261,229,070 RGD:1624291
RGD:13792537
G Ndor1 NADPH dependent diflavin oxidoreductase 1 JBrowse link 3 2,466,698 2,474,928 RGD:1600115
G Nfs1 NFS1 cysteine desulfurase JBrowse link 3 151,665,813 151,688,151 RGD:13792537
G Nfu1 NFU1 iron-sulfur cluster scaffold JBrowse link 4 118,814,284 118,834,955 RGD:1624291
RGD:13792537
G Nubp1 nucleotide binding protein 1 JBrowse link 10 5,333,378 5,343,949 RGD:1624291
RGD:13792537
RGD:1600115
G Nubp2 nucleotide binding protein 2 JBrowse link 10 14,244,201 14,247,930 RGD:13792537
G Nubpl nucleotide binding protein-like JBrowse link 6 72,891,758 73,147,837 RGD:13792537
G Tst thiosulfate sulfurtransferase JBrowse link 7 119,616,323 119,623,072 RGD:729953
L-ascorbic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akr1a1 aldo-keto reductase family 1 member A1 JBrowse link 5 135,482,068 135,498,693 RGD:13825440
RGD:13792537
RGD:1624291
G Gsto1 glutathione S-transferase omega 1 JBrowse link 1 267,607,437 267,617,387 RGD:70644
G Gulo gulonolactone (L-) oxidase JBrowse link 15 42,671,206 42,693,711 RGD:1600115
G Rgn regucalcin JBrowse link X 1,833,484 1,848,904 RGD:1624291
RGD:13792537
RGD:1600115
lipoate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lias lipoic acid synthetase JBrowse link 14 44,507,217 44,524,287 RGD:1624291
RGD:13792537
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acsl1 acyl-CoA synthetase long-chain family member 1 JBrowse link 16 48,937,456 49,003,898 RGD:2312800
G Acsl4 acyl-CoA synthetase long-chain family member 4 JBrowse link X 113,596,247 113,660,024 RGD:2312800
G Acsl5 acyl-CoA synthetase long-chain family member 5 JBrowse link 1 276,240,703 276,290,012 RGD:2312800
G Acsl6 acyl-CoA synthetase long-chain family member 6 JBrowse link 10 39,654,771 39,717,592 RGD:2312800
G Elovl1 ELOVL fatty acid elongase 1 JBrowse link 5 137,255,868 137,260,486 RGD:1600115
G Elovl3 ELOVL fatty acid elongase 3 JBrowse link 1 265,883,353 265,887,181 RGD:1600115
G Elovl4 ELOVL fatty acid elongase 4 JBrowse link 8 91,310,690 91,338,625 RGD:1600115
G Elovl5 ELOVL fatty acid elongase 5 JBrowse link 8 85,220,941 85,287,449 RGD:1600115
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:1600115
G Elovl7 ELOVL fatty acid elongase 7 JBrowse link 2 40,373,211 40,386,643 RGD:1600115
G LOC102549542 elongation of very long chain fatty acids protein 6-like JBrowse link 2 234,375,172 234,486,639 RGD:1600115
malonyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acaca acetyl-CoA carboxylase alpha JBrowse link 10 71,519,392 71,719,910 RGD:1600115
G Acacb acetyl-CoA carboxylase beta JBrowse link 12 48,127,149 48,238,969 RGD:1624291
menaquinone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ubiad1 UbiA prenyltransferase domain containing 1 JBrowse link 5 165,247,630 165,259,228 RGD:1600115
RGD:13792537
RGD:1624291
mitochondrial acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mpc1 mitochondrial pyruvate carrier 1 JBrowse link 1 53,026,608 53,038,229 RGD:1624291
G Mpc2 mitochondrial pyruvate carrier 2 JBrowse link 13 83,680,527 83,700,491 RGD:1624291
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 JBrowse link X 37,329,779 37,343,410 RGD:1624291
Mo-molybdopterin cofactor biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gphn gephyrin JBrowse link 6 101,327,874 101,859,169 RGD:1624291
RGD:13792537
RGD:1600115
RGD:8554131
G Mocos molybdenum cofactor sulfurase JBrowse link 18 16,590,086 16,636,312 RGD:1600115
G Mocs1 molybdenum cofactor synthesis 1 JBrowse link 9 13,493,705 13,513,972 RGD:1624291
G Mocs2 molybdenum cofactor synthesis 2 JBrowse link 2 46,980,964 46,992,886 RGD:1600115
RGD:1624291
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:1624291
G Nfs1 NFS1 cysteine desulfurase JBrowse link 3 151,665,813 151,688,151 RGD:1600115
molybdopterin cofactor biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gphn gephyrin JBrowse link 6 101,327,874 101,859,169 RGD:1624291
RGD:1600115
RGD:13792537
G Mocs1 molybdenum cofactor synthesis 1 JBrowse link 9 13,493,705 13,513,972 RGD:1624291
NAD biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afmid arylformamidase JBrowse link 10 106,828,963 106,844,314 RGD:13792537
G Aspdh aspartate dehydrogenase domain containing JBrowse link 1 100,471,066 100,473,327 RGD:1600115
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link 6 7,045,145 7,059,227 RGD:1624291
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:1600115
RGD:1624291
G Nadsyn1 NAD synthetase 1 JBrowse link 1 216,985,710 217,013,743 RGD:1600115
RGD:13792537
G Nampt nicotinamide phosphoribosyltransferase JBrowse link 6 52,122,085 52,156,473 RGD:1624291
RGD:1600115
G Naprt nicotinate phosphoribosyltransferase JBrowse link 7 116,922,979 116,926,436 RGD:2289495
RGD:13792537
RGD:1600115
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 JBrowse link 5 166,409,460 166,430,291 RGD:1600115
RGD:1624291
RGD:13792537
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 JBrowse link 13 70,379,346 70,559,311 RGD:13782043
RGD:13792537
RGD:1600115
G Nmnat3 nicotinamide nucleotide adenylyltransferase 3 JBrowse link 8 106,317,038 106,429,535 RGD:1624291
RGD:13792537
RGD:1600115
G Nmrk1 nicotinamide riboside kinase 1 JBrowse link 1 234,721,992 234,749,452 RGD:1600115
G Qprt quinolinate phosphoribosyltransferase JBrowse link 1 198,544,262 198,559,556 RGD:2289495
RGD:13792537
RGD:1600115
NAD salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Naprt nicotinate phosphoribosyltransferase JBrowse link 7 116,922,979 116,926,436 RGD:13792537
NADP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G G6pd glucose-6-phosphate dehydrogenase JBrowse link X 156,274,800 156,293,935 RGD:1624291
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:11522736
G Nadk NAD kinase JBrowse link 5 172,984,930 173,015,505 RGD:13703105
RGD:13792537
G Nadk2 NAD kinase 2, mitochondrial JBrowse link 2 58,462,588 58,504,735 RGD:1600115
negative regulation of hydrogen peroxide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctns cystinosin, lysosomal cystine transporter JBrowse link 10 59,749,250 59,772,475 RGD:12910938
G Cycs cytochrome c, somatic JBrowse link 4 80,331,226 80,333,326 RGD:7349317
G Fyn FYN proto-oncogene, Src family tyrosine kinase JBrowse link 20 44,436,354 44,630,316 RGD:13601987
G Mpv17l MPV17 mitochondrial inner membrane protein like JBrowse link 10 3,321,488 3,359,219 RGD:1624291
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:8694322
porphyrin-containing compound biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb6 ATP binding cassette subfamily B member 6 JBrowse link 9 82,373,950 82,382,228 RGD:1624291
G Ank1 ankyrin 1 JBrowse link 16 73,681,422 73,912,605 RGD:1624291
G Fech ferrochelatase JBrowse link 18 59,941,992 59,975,192 RGD:1624291
G Ppox protoporphyrinogen oxidase JBrowse link 13 89,650,094 89,654,998 RGD:1599180
RGD:1624291
G Slc11a2 solute carrier family 11 member 2 JBrowse link 7 142,025,812 142,062,892 RGD:1624291
G Spta1 spectrin, alpha, erythrocytic 1 JBrowse link 13 92,264,231 92,340,091 RGD:1624291
G Sptb spectrin, beta, erythrocytic JBrowse link 6 99,657,144 99,783,189 RGD:1624291
G Urod uroporphyrinogen decarboxylase JBrowse link 5 135,855,429 135,859,515 RGD:4144825
G Uros uroporphyrinogen III synthase JBrowse link 1 205,755,766 205,778,170 RGD:1624291
positive regulation of glutathione biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 JBrowse link 4 98,648,513 98,709,695 RGD:1624291
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:1624291
positive regulation of hydrogen peroxide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Duoxa1 dual oxidase maturation factor 1 JBrowse link 3 114,241,057 114,251,720 RGD:1624291
G Duoxa2 dual oxidase maturation factor 2 JBrowse link 3 114,236,718 114,240,086 RGD:1624291
G Mfn2 mitofusin 2 JBrowse link 5 164,684,244 164,715,414 RGD:12910740
G Mt-co2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 7,006 7,689 RGD:13506652
G Zfp13 zinc finger protein 13 JBrowse link 10 12,908,643 12,916,784 RGD:1624291
propionyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link 8 58,166,990 58,195,884 RGD:1624291
protoporphyrinogen IX biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alad aminolevulinate dehydratase JBrowse link 5 78,368,867 78,379,206 RGD:1600115
G Alas1 5'-aminolevulinate synthase 1 JBrowse link 8 114,927,704 114,941,038 RGD:1600115
G Alas2 5'-aminolevulinate synthase 2 JBrowse link X 23,167,576 23,187,356 RGD:1600115
G Cpox coproporphyrinogen oxidase JBrowse link 11 44,039,665 44,049,648 RGD:4145128
RGD:13792537
RGD:1600115
G Hmbs hydroxymethylbilane synthase JBrowse link 8 48,667,278 48,674,673 RGD:1600115
G Ireb2 iron responsive element binding protein 2 JBrowse link 8 59,450,974 59,503,634 RGD:1624291
RGD:1600115
G Ppox protoporphyrinogen oxidase JBrowse link 13 89,650,094 89,654,998 RGD:1600115
G Urod uroporphyrinogen decarboxylase JBrowse link 5 135,855,429 135,859,515 RGD:1600115
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdxk pyridoxal kinase JBrowse link 20 10,930,651 10,952,194 RGD:1600115
RGD:1624291
RGD:13792537
G RGD1566085 similar to pyridoxal (pyridoxine, vitamin B6) kinase JBrowse link 20 10,883,952 10,912,870 RGD:1600115
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdxk pyridoxal kinase JBrowse link 20 10,930,651 10,952,194 RGD:2303018
G Pnpo pyridoxamine 5'-phosphate oxidase JBrowse link 10 84,874,926 84,881,190 RGD:1624291
RGD:13792537
pyridoxine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpo pyridoxamine 5'-phosphate oxidase JBrowse link 10 84,874,926 84,881,190 RGD:1600115
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdk1 pyruvate dehydrogenase kinase 1 JBrowse link 3 58,530,870 58,561,494 RGD:1600115
RGD:1624291
G Pdk2 pyruvate dehydrogenase kinase 2 JBrowse link 10 82,838,270 82,852,758 RGD:1600115
RGD:1624291
G Pdk3 pyruvate dehydrogenase kinase 3 JBrowse link X 62,836,131 62,904,114 RGD:1624291
G Pdk4 pyruvate dehydrogenase kinase 4 JBrowse link 4 30,546,772 30,556,774 RGD:1600115
RGD:1624291
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
regulation of glutathione biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc7a11 solute carrier family 7 member 11 JBrowse link 2 139,453,774 139,528,479 RGD:1624291
regulation of heme biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Srrd SRR1 domain containing JBrowse link 12 50,315,876 50,321,488 RGD:1624291
RGD:1600115
G Tmem14c transmembrane protein 14C JBrowse link 17 21,571,510 21,577,651 RGD:1624291
regulation of ubiquinone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Coq3 coenzyme Q3 methyltransferase JBrowse link 5 36,024,673 36,056,664 RGD:69814
G Pptc7 protein phosphatase targeting COQ7 JBrowse link 12 39,731,107 39,769,480 RGD:1624291
S-adenosylmethionine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mat1a methionine adenosyltransferase 1A JBrowse link 16 18,690,649 18,709,135 RGD:1359039
RGD:1624291
RGD:1600115
RGD:7242777
RGD:7242770
G Mat2a methionine adenosyltransferase 2A JBrowse link 4 100,297,478 100,303,047 RGD:1359040
RGD:1624291
RGD:1600115
RGD:7242777
RGD:727376
G Mat2b methionine adenosyltransferase 2B JBrowse link 10 25,832,096 25,848,045 RGD:1600115
RGD:13792537
RGD:1624291
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
siderophore biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdh2 3-hydroxybutyrate dehydrogenase 2 JBrowse link 2 240,461,505 240,482,149 RGD:1624291
RGD:13792537
RGD:1600115
tetrahydrobiopterin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhfr dihydrofolate reductase JBrowse link 2 21,931,887 21,958,927 RGD:1624291
G Gch1 GTP cyclohydrolase 1 JBrowse link 15 23,935,011 23,968,971 RGD:625450
RGD:13792537
RGD:1624291
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 JBrowse link 20 30,689,690 30,696,465 RGD:1600115
G Pcbd2 pterin-4 alpha-carbinolamine dehydratase 2 JBrowse link 17 8,929,675 8,980,712 RGD:1600115
G Pts 6-pyruvoyl-tetrahydropterin synthase JBrowse link 8 54,954,261 54,961,271 RGD:68294
RGD:1600115
RGD:1624291
G Qdpr quinoid dihydropteridine reductase JBrowse link 14 70,164,682 70,178,284 RGD:729701
RGD:13792537
RGD:8553309
RGD:5128582
RGD:4139903
G RGD1560795 similar to Sepiapterin reductase (SPR) JBrowse link 4 116,933,277 116,936,466 RGD:13792537
G Spr sepiapterin reductase JBrowse link 4 116,912,343 116,916,073 RGD:70022
RGD:13792537
RGD:1600056
tetrahydrofolate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh1l1 aldehyde dehydrogenase 1 family, member L1 JBrowse link 4 123,516,553 123,564,067 RGD:1547843
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase JBrowse link 9 78,862,013 78,882,061 RGD:2301991
G Dhfr dihydrofolate reductase JBrowse link 2 21,931,887 21,958,927 RGD:1298877
RGD:13792537
RGD:1624291
RGD:1600115
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase JBrowse link 11 31,780,477 31,805,728 RGD:2301990
G Gch1 GTP cyclohydrolase 1 JBrowse link 15 23,935,011 23,968,971 RGD:1600115
tetrahydrofolylpolyglutamate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fpgs folylpolyglutamate synthase JBrowse link 3 11,717,667 11,729,694 RGD:1624291
RGD:13792537
thiamine diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tpk1 thiamin pyrophosphokinase 1 JBrowse link 4 72,792,252 73,174,179 RGD:1600115
RGD:13792537
ubiquinone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Coq10a coenzyme Q10A JBrowse link 7 2,780,930 2,788,189 RGD:13792537
G Coq10b coenzyme Q10B JBrowse link 9 61,655,963 61,675,880 RGD:13792537
G Coq2 coenzyme Q2, polyprenyltransferase JBrowse link 14 10,581,102 10,601,093 RGD:1600115
RGD:13792537
RGD:1624291
G Coq3 coenzyme Q3 methyltransferase JBrowse link 5 36,024,673 36,056,664 RGD:1600115
RGD:1624291
G Coq4 coenzyme Q4 JBrowse link 3 8,349,386 8,357,719 RGD:1600115
G Coq5 coenzyme Q5, methyltransferase JBrowse link 12 47,078,753 47,095,438 RGD:1600115
RGD:13792537
RGD:1624291
G Coq6 coenzyme Q6 monooxygenase JBrowse link 6 108,076,393 108,087,782 RGD:1600115
RGD:13792537
G Coq7 coenzyme Q7, hydroxylase JBrowse link 1 188,176,060 188,190,874 RGD:69815
RGD:13792537
RGD:1624291
RGD:1600115
G Coq8a coenzyme Q8A JBrowse link 13 98,451,629 98,480,438 RGD:1600115
RGD:13792537
RGD:1624291
G Coq8b coenzyme Q8B JBrowse link 1 84,043,487 84,067,066 RGD:1624291
RGD:13792537
RGD:1600115
G Coq9 coenzyme Q9 JBrowse link 19 10,583,855 10,596,848 RGD:1600115
RGD:13792537
RGD:1624291
G Fdxr ferredoxin reductase JBrowse link 10 103,817,724 103,826,413 RGD:13792537
G Pdss1 decaprenyl diphosphate synthase subunit 1 JBrowse link 17 90,033,432 90,072,506 RGD:1624291
G Pdss2 decaprenyl diphosphate synthase subunit 2 JBrowse link 20 47,966,513 48,192,747 RGD:1624291
RGD:1600115
G Ubiad1 UbiA prenyltransferase domain containing 1 JBrowse link 5 165,247,630 165,259,228 RGD:1624291
RGD:1600115
ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ubiad1 UbiA prenyltransferase domain containing 1 JBrowse link 5 165,247,630 165,259,228 RGD:13792537
ubiquinone-6 biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ndufa9 NADH:ubiquinone oxidoreductase subunit A9 JBrowse link 4 159,371,263 159,399,636 RGD:13792537
uroporphyrinogen III biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Uros uroporphyrinogen III synthase JBrowse link 1 205,755,766 205,778,170 RGD:4144811
RGD:13792537
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11641
      biosynthetic process 5989
        cellular biosynthetic process 5814
          cofactor biosynthetic process 194
            7,8-didemethyl-8-hydroxy-5-deazariboflavin biosynthetic process 0
            7,8-dihydroneopterin 3'-triphosphate biosynthetic process 1
            aerobactin biosynthetic process 0
            bacillithiol biosynthetic process 0
            cobalamin biosynthetic process + 0
            coenzyme biosynthetic process + 117
            corrin biosynthetic process 0
            dehydro-D-arabinono-1,4-lactone biosynthetic process 0
            glutathione biosynthetic process + 12
            hydrogen peroxide biosynthetic process + 19
            iron-sulfur cluster assembly + 23
            iron-sulfur-molybdenum cofactor assembly + 0
            iron-sulfur-molybdenum cofactor biosynthetic process 0
            molybdopterin cofactor biosynthetic process 2
            mycothiol biosynthetic process 0
            phytochromobilin biosynthetic process 0
            porphyrin-containing compound biosynthetic process + 24
            prosthetic group biosynthetic process + 0
            pyridoxal biosynthetic process 0
            pyridoxine biosynthetic process 1
            siderophore biosynthetic process + 1
            vibriobactin biosynthetic process 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.