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ONTOLOGY REPORT - ANNOTATIONS


Term:smooth muscle cell differentiation
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Accession:GO:0051145 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary.
Synonyms:exact_synonym: nonstriated muscle cell differentiation



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smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3703113|PMID:17078885) Ensembl
MGI
Ensembl
PMID:17078885 GO_REF:0000107 MGI:3703113 NCBI chr36:3,743,257...3,818,659
Ensembl chr36:3,744,163...3,818,652
JBrowse link
G AGT angiotensinogen acts_upstream_of_or_within ISO (MGI:1313232|PMID:9788961) MGI PMID:9788961 MGI:1313232 NCBI chr 4:8,681,192...8,694,059
Ensembl chr 4:8,683,798...8,693,880
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624584|PMID:16546160) MGI
Ensembl
PMID:16546160 GO_REF:0000107 MGI:3624584 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:4359548|PMID:19690384) MGI PMID:19690384 MGI:4359548 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3716020|PMID:17560563) Ensembl
Ensembl
MGI
PMID:17560563 GO_REF:0000107 MGI:3716020 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:2135612|PMID:11493558), (MGI:3766861|PMID:17881493)
(MGI:3766861|PMID:17881493)
MGI PMID:11493558 PMID:17881493 MGI:2135612 MGI:3766861 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G GATA6 GATA binding protein 6 involved_in ISO (PMID:17626241) UniProt PMID:17626241 NCBI chr 7:65,932,114...65,962,574 JBrowse link
G ITGA8 integrin subunit alpha 8 involved_in ISO (MGI:4947862|PMID:21335239) BHF-UCL PMID:21335239 MGI:4947862 NCBI chr 2:21,034,630...21,244,304
Ensembl chr 2:21,075,653...21,241,951
JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1298294|PMID:9778514) UniProt
MGI
PMID:9778514 GO_REF:0000024 MGI:1298294 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852
JBrowse link
G MRTFA myocardin related transcription factor A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:24,561,161...24,759,586
Ensembl chr10:24,561,161...24,759,081
JBrowse link
G MRTFB myocardin related transcription factor B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:28,902,749...29,113,448
Ensembl chr 6:28,918,350...29,098,220
JBrowse link
G MYOCD myocardin involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:2670236|PMID:12867591), (MGI:4941650|PMID:21357509)
(MGI:3773460|PMID:18188448)
GO_Central
MGI
Ensembl
RGD
PMID:12392995 PMID:12867591 PMID:18188448 PMID:21357509 PMID:21873635 GO_REF:0000107 MGI:2670236 MGI:3773460 MGI:4941650 RGD:1299359 NCBI chr 5:36,674,476...36,774,435
Ensembl chr 5:36,674,300...36,769,327
JBrowse link
G NFATC4 nuclear factor of activated T cells 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:4,337,098...4,346,409
Ensembl chr 8:4,336,450...4,346,100
JBrowse link
G NPNT nephronectin involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:26,706,147...26,781,792
Ensembl chr32:26,705,476...26,781,275
JBrowse link
G NTF3 neurotrophin 3 acts_upstream_of_or_within ISO (MGI:3505802|PMID:15497153) MGI PMID:15497153 MGI:3505802 NCBI chr27:39,383,017...39,454,613
Ensembl chr27:39,383,152...39,454,601
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3618666|PMID:16511601) MGI PMID:16511601 MGI:3618666 NCBI chr12:44,901,076...44,929,730
Ensembl chr12:44,873,119...44,929,205
JBrowse link
G TBX2 T-box transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6284231|PMID:30478225) Ensembl
Ensembl
MGI
PMID:30478225 GO_REF:0000107 MGI:6284231 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within ISO (MGI:6284231|PMID:30478225) MGI PMID:30478225 MGI:6284231 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TMEM204 transmembrane protein 204 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:4443218|PMID:20439428)
(PMID:21873635)
MGI
GO_Central
PMID:20439428 PMID:21873635 MGI:4443218 NCBI chr 6:39,274,853...39,290,255
Ensembl chr 6:39,275,373...39,289,711
JBrowse link
G WNT4 Wnt family member 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3624584|PMID:16546160) MGI
Ensembl
PMID:16546160 GO_REF:0000107 MGI:3624584 NCBI chr 2:77,112,045...77,129,702
Ensembl chr 2:77,101,300...77,127,111
JBrowse link
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (MGI:4359548|PMID:19690384) MGI PMID:19690384 MGI:4359548 NCBI chr10:20,160,916...20,208,786
Ensembl chr10:20,160,206...20,243,160
JBrowse link
aortic smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 acts_upstream_of_or_within ISO (MGI:5007924|PMID:19342595) MGI PMID:19342595 MGI:5007924 NCBI chr 1:90,709,221...90,884,295
Ensembl chr 1:90,712,520...90,883,622
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:5007924|PMID:19342595) MGI PMID:19342595 MGI:5007924 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
JBrowse link
cardiac vascular smooth muscle cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO (MGI:4838384|PMID:20619341) MGI PMID:20619341 MGI:4838384 NCBI chr 1:64,630,656...64,646,546 JBrowse link
G NOTCH1 notch receptor 1 involved_in ISO (MGI:5298073|PMID:21311046) BHF-UCL PMID:21311046 MGI:5298073 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
G VEGFA vascular endothelial growth factor A involved_in ISO (MGI:4461879|PMID:18093989) BHF-UCL PMID:18093989 MGI:4461879 NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965
JBrowse link
cardiac vascular smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA6 GATA binding protein 6 involved_in ISO (PMID:11889139), (PMID:12615657) UniProt PMID:11889139 PMID:12615657 NCBI chr 7:65,932,114...65,962,574 JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (PMID:18297060) BHF-UCL PMID:18297060 NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755
JBrowse link
G MIR143 microRNA mir-143 acts_upstream_of_or_within ISO (MGI:4443305|PMID:19816508) MGI PMID:19816508 MGI:4443305 NCBI chr 4:59,534,535...59,534,589
Ensembl chr 4:59,534,535...59,534,594
JBrowse link
G MIR145 microRNA mir-145 acts_upstream_of_or_within ISO (MGI:4443305|PMID:19816508) MGI PMID:19816508 MGI:4443305 NCBI chr 4:59,533,128...59,533,210
Ensembl chr 4:59,533,128...59,533,210
JBrowse link
G MYOCD myocardin involved_in ISO PMID:16151017 BHF-UCL PMID:16151017 RGD:8554320 NCBI chr 5:36,674,476...36,774,435
Ensembl chr 5:36,674,300...36,769,327
JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3513738|PMID:15569937) Ensembl
Ensembl
MGI
PMID:15569937 GO_REF:0000107 MGI:3513738 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533
JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:31,415,324...31,438,772
Ensembl chr22:31,417,308...31,437,587
JBrowse link
kidney smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TSHZ3 teashirt zinc finger homeobox 3 involved_in ISO (MGI:3806378|PMID:18776146) UniProt PMID:18776146 MGI:3806378 NCBI chr 1:120,388,125...120,471,185
Ensembl chr 1:120,388,107...120,456,185
JBrowse link
negative regulation of aortic smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR21 microRNA mir-21 involved_in ISO (PMID:22034194) BHF-UCL PMID:22034194 NCBI chr 9:34,340,550...34,340,609
Ensembl chr 9:34,340,533...34,340,624
JBrowse link
negative regulation of kidney smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
negative regulation of smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD17 ankyrin repeat domain 17 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4360129|PMID:19619540) MGI
Ensembl
Ensembl
PMID:19619540 GO_REF:0000107 MGI:4360129 NCBI chr13:61,892,872...62,046,625
Ensembl chr13:61,893,951...62,012,404
JBrowse link
G EREG epiregulin involved_in ISO (PMID:14581411) UniProt PMID:14581411 NCBI chr13:62,857,325...62,877,831
Ensembl chr13:62,856,709...62,877,760
JBrowse link
G FOXO4 forkhead box O4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:55,469,738...55,477,699
Ensembl chr  X:55,469,382...55,477,699
JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G MED28 mediator complex subunit 28 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3762062|PMID:17848560) Ensembl
MGI
PMID:17848560 GO_REF:0000107 MGI:3762062 NCBI chr 3:62,887,095...62,895,588
Ensembl chr 3:62,890,515...62,895,562
JBrowse link
G PRDM6 PR/SET domain 6 acts_upstream_of_or_within ISO (MGI:3619789|PMID:16537907) MGI PMID:16537907 MGI:3619789 NCBI chr11:12,942,789...13,046,278
Ensembl chr11:12,943,432...13,044,673
JBrowse link
G RBPMS2 RNA binding protein, mRNA processing factor 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr30:29,160,879...29,187,231
Ensembl chr30:29,157,119...29,232,043
JBrowse link
G RCAN1 regulator of calcineurin 1 ISO RGD PMID:15148306 RGD:1581653 NCBI chr31:29,908,046...30,002,412
Ensembl chr31:29,909,388...30,002,418
JBrowse link
negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr29:27,185,191...27,188,121
Ensembl chr29:27,185,191...27,188,121
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in ISO (MGI:5284767|PMID:18239137) BHF-UCL PMID:18239137 MGI:5284767 NCBI chr 1:64,630,656...64,646,546 JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
negative regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
negative regulation of vascular associated smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR15B microRNA mir-15b involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr34:26,460,663...26,460,722
Ensembl chr34:26,460,645...26,460,741
JBrowse link
G MIR221 microRNA mir-221 involved_in ISO (PMID:18548003), (PMID:19088079) BHF-UCL PMID:18548003 PMID:19088079 NCBI chr  X:39,523,890...39,523,951
Ensembl chr  X:39,523,885...39,523,954
JBrowse link
G MIR26A-1 microRNA mir-26a-1 involved_in ISO (PMID:20857419) BHF-UCL PMID:20857419 NCBI chr23:7,747,073...7,747,133
Ensembl chr23:7,747,064...7,747,140
JBrowse link
G MIR26A-2 microRNA mir-26a-2 involved_in ISO (PMID:20857419) BHF-UCL PMID:20857419 NCBI chr10:1,880,513...1,880,572
Ensembl chr10:1,880,513...1,880,572
JBrowse link
G MIR99A-2 microRNA mir-99a-2 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr 5:12,047,369...12,047,425
Ensembl chr 5:12,047,369...12,047,425
JBrowse link
G NFATC1 nuclear factor of activated T cells 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:1,027,021...1,121,362
Ensembl chr 1:1,028,695...1,121,588
JBrowse link
G NFATC2 nuclear factor of activated T cells 2 involved_in ISO (PMID:23853098) BHF-UCL PMID:23853098 NCBI chr24:37,606,977...37,734,813
Ensembl chr24:37,609,561...37,771,132
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:81,294,656...81,434,256
Ensembl chr 5:81,296,214...81,434,250
JBrowse link
G PDCD4 programmed cell death 4 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr28:22,198,274...22,227,184
Ensembl chr28:22,198,322...22,226,717
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in ISO (PMID:19088079) BHF-UCL PMID:19088079 NCBI chr10:25,798,877...25,819,422
Ensembl chr10:25,798,938...25,817,746
JBrowse link
negative regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in ISO (PMID:27021683) BHF-UCL PMID:27021683 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029
JBrowse link
G FGF9 fibroblast growth factor 9 involved_in ISO PMID:28259995 BHF-UCL PMID:28259995 RGD:13601993 NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550
JBrowse link
positive regulation of aortic smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTH cystathionine gamma-lyase involved_in ISO (PMID:21659522) BHF-UCL PMID:21659522 NCBI chr 6:75,324,328...75,348,476
Ensembl chr 6:75,324,787...75,349,451
JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:4947512|PMID:20019329) UniProt PMID:20019329 MGI:4947512 NCBI chr18:51,389,797...51,396,109
Ensembl chr18:51,389,824...51,396,107
JBrowse link
positive regulation of cardiac vascular smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPER1 G protein-coupled estrogen receptor 1 involved_in ISO (PMID:23840305) AgBase PMID:23840305 NCBI chr 6:15,792,072...15,796,922
Ensembl chr 6:15,792,897...15,794,051
JBrowse link
positive regulation of kidney smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
positive regulation of smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 acts_upstream_of_or_within ISO PMID:8616889 MGI PMID:8616889 RGD:8553354 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G MIR34A microRNA mir-34a involved_in ISO (PMID:25526086) BHF-UCL PMID:25526086 NCBI chr 5:62,485,832...62,485,897
Ensembl chr 5:62,485,832...62,485,897
JBrowse link
G MYOCD myocardin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:36,674,476...36,774,435
Ensembl chr 5:36,674,300...36,769,327
JBrowse link
G OLFM2 olfactomedin 2 involved_in ISO (PMID:25298399) UniProt PMID:25298399 NCBI chr20:51,148,013...51,153,303
Ensembl chr20:51,148,157...51,153,314
JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 ISO RGD PMID:16135793 RGD:2303115 NCBI chr30:32,116,363...32,232,530
Ensembl chr30:32,119,311...32,228,945
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (MGI:5810254|PMID:25526086) BHF-UCL PMID:25526086 MGI:5810254 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 ISO RGD PMID:23110084 RGD:9586362 NCBI chr16:15,279,295...15,311,210
Ensembl chr16:15,279,309...15,417,027
JBrowse link
G TSHZ3 teashirt zinc finger homeobox 3 acts_upstream_of_or_within ISO (MGI:3806378|PMID:18776146) MGI PMID:18776146 MGI:3806378 NCBI chr 1:120,388,125...120,471,185
Ensembl chr 1:120,388,107...120,456,185
JBrowse link
positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYOCD myocardin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:36,674,476...36,774,435
Ensembl chr 5:36,674,300...36,769,327
JBrowse link
G NPNT nephronectin involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:26,706,147...26,781,792
Ensembl chr32:26,705,476...26,781,275
JBrowse link
positive regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
positive regulation of vascular associated smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENG endoglin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:55,558,246...55,590,081
Ensembl chr 9:55,558,305...55,589,064
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:47,108,442...47,190,935
Ensembl chr13:47,108,504...47,190,029
JBrowse link
G MIR125B-1 microRNA mir-125b-1 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr 5:12,097,672...12,097,732
Ensembl chr 5:12,097,658...12,097,745
JBrowse link
G MIR125B-2 microRNA mir-125b-2 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr31:13,304,980...13,305,040
Ensembl chr31:13,304,964...13,305,052
JBrowse link
G MIR21 microRNA mir-21 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr 9:34,340,550...34,340,609
Ensembl chr 9:34,340,533...34,340,624
JBrowse link
positive regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR140 microRNA mir-140 involved_in ISO (PMID:27021683) BHF-UCL PMID:27021683 NCBI chr 5:79,814,256...79,814,316
Ensembl chr 5:79,814,246...79,814,326
JBrowse link
G SOD2 superoxide dismutase 2 involved_in ISO (PMID:27021683) BHF-UCL PMID:27021683 NCBI chr 1:48,943,472...48,955,158
Ensembl chr 1:48,836,262...48,955,706
JBrowse link
regulation of aortic smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SDC4 syndecan 4 NOT|involved_in ISO PMID:25089138 BHF-UCL PMID:25089138 RGD:11079193 NCBI chr24:32,628,704...32,648,809
Ensembl chr24:32,630,437...32,649,114
JBrowse link
regulation of smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766861|PMID:17881493) Ensembl
Ensembl
MGI
PMID:17881493 GO_REF:0000107 MGI:3766861 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:3688953|PMID:16989802) MGI
UniProt
PMID:16989802 GO_REF:0000024 MGI:3688953 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G MYOCD myocardin ISO RGD PMID:12756293 RGD:1299358 NCBI chr 5:36,674,476...36,774,435
Ensembl chr 5:36,674,300...36,769,327
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (MGI:3641341|PMID:16824956) MGI PMID:16824956 MGI:3641341 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495
JBrowse link
ureter smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4437379|PMID:20110314) Ensembl
Ensembl
MGI
PMID:20110314 GO_REF:0000107 MGI:4437379 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534
JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:4848001|PMID:20881014) MGI PMID:20881014 MGI:4848001 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G TSHZ3 teashirt zinc finger homeobox 3 involved_in ISO (MGI:3806378|PMID:18776146) UniProt PMID:18776146 MGI:3806378 NCBI chr 1:120,388,125...120,471,185
Ensembl chr 1:120,388,107...120,456,185
JBrowse link
vascular associated smooth muscle cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADM adrenomedullin involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:33,472,197...33,474,472
Ensembl chr21:33,471,623...33,474,495
JBrowse link
G COMP cartilage oligomeric matrix protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5318950|PMID:21350216) MGI
Ensembl
PMID:21350216 GO_REF:0000107 MGI:5318950 NCBI chr20:44,306,813...44,314,575
Ensembl chr20:44,306,859...44,314,625
JBrowse link
G EDNRA endothelin receptor type A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:45,823,472...45,878,527
Ensembl chr15:45,823,560...45,876,463
JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5584046|PMID:23636094) UniProt PMID:23636094 MGI:5584046 NCBI chr18:51,389,797...51,396,109
Ensembl chr18:51,389,824...51,396,107
JBrowse link
G ENG endoglin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:55,558,246...55,590,081
Ensembl chr 9:55,558,305...55,589,064
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in ISO (MGI:4453944|PMID:20122914) BHF-UCL PMID:20122914 MGI:4453944
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in ISO (PMID:15821257) UniProt PMID:15821257 NCBI chr 1:64,630,656...64,646,546 JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:2136698|PMID:11439183) MGI PMID:11439183 MGI:2136698 NCBI chr 5:81,294,656...81,434,256
Ensembl chr 5:81,296,214...81,434,250
JBrowse link
G NFATC4 nuclear factor of activated T cells 4 acts_upstream_of_or_within ISO (MGI:2136698|PMID:11439183) MGI PMID:11439183 MGI:2136698 NCBI chr 8:4,337,098...4,346,409
Ensembl chr 8:4,336,450...4,346,100
JBrowse link
G RAMP2 receptor activity modifying protein 2 involved_in ISO (MGI:3772552|PMID:18097473) UniProt PMID:18097473 MGI:3772552 NCBI chr 9:20,250,711...20,252,485 JBrowse link
G SGCB sarcoglycan beta acts_upstream_of_or_within ISO (MGI:1352919|PMID:10678176) MGI PMID:10678176 MGI:1352919 NCBI chr13:44,969,483...44,987,274
Ensembl chr13:44,972,473...44,987,184
JBrowse link
G VPS25 vacuolar protein sorting 25 homolog involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:20,242,230...20,247,396 JBrowse link
vascular associated smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLNR apelin receptor involved_in ISO (MGI:5584055|PMID:23603510) BHF-UCL PMID:23603510 MGI:5584055 NCBI chr18:38,878,621...38,882,280
Ensembl chr18:38,878,947...38,886,206
JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO (MGI:5883383|PMID:28057640) MGI PMID:28057640 MGI:5883383 NCBI chr20:53,566,226...53,598,365
Ensembl chr20:53,566,261...53,598,761
JBrowse link
G CFD complement factor D acts_upstream_of_or_within ISO (MGI:5883383|PMID:28057640) MGI PMID:28057640 MGI:5883383 NCBI chr20:57,785,297...57,787,773
Ensembl chr20:57,657,154...57,787,713
JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (MGI:5883383|PMID:28057640) MGI PMID:28057640 MGI:5883383 NCBI chr38:2,878,677...2,956,226 JBrowse link
G EPC1 enhancer of polycomb homolog 1 ISO RGD PMID:22398275 RGD:9587795 NCBI chr 2:14,566,177...14,659,774
Ensembl chr 2:14,565,560...14,659,353
JBrowse link
G MRTFB myocardin related transcription factor B acts_upstream_of_or_within ISO (MGI:3607644|PMID:16204380) MGI PMID:16204380 MGI:3607644 NCBI chr 6:28,902,749...29,113,448
Ensembl chr 6:28,918,350...29,098,220
JBrowse link
G MYOCD myocardin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:36,674,476...36,774,435
Ensembl chr 5:36,674,300...36,769,327
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (MGI:2136698|PMID:11439183) MGI PMID:11439183 MGI:2136698 NCBI chr 5:81,294,656...81,434,256
Ensembl chr 5:81,296,214...81,434,250
JBrowse link
G NFATC4 nuclear factor of activated T cells 4 acts_upstream_of_or_within ISO (MGI:2136698|PMID:11439183) MGI PMID:11439183 MGI:2136698 NCBI chr 8:4,337,098...4,346,409
Ensembl chr 8:4,336,450...4,346,100
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:3796777|PMID:18458156) MGI PMID:18458156 MGI:3796777 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273
JBrowse link
G QKI QKI, KH domain containing RNA binding acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3029686|PMID:14706070) MGI
Ensembl
PMID:14706070 GO_REF:0000107 MGI:3029686 NCBI chr 1:51,800,294...51,956,891
Ensembl chr 1:51,800,309...51,952,714
JBrowse link

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