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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA ligation involved in DNA repair
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Accession:GO:0051103 term browser browse the term
Definition:The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA repair.
Synonyms:related_synonym: DNA ligation during DNA repair


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DNA ligation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 acts_upstream_of_or_within
involved_in		 ISO MGI:1857732 (MGI:1312981|PMID:9823897)
(PMID:12517771), (PMID:17290226)		 RGD PMID:9823897 PMID:12517771 PMID:17290226 MGI:1312981 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040 		JBrowse link
G Nhej1 nonhomologous end-joining factor 1 involved_in ISO
IEA		 (PMID:19056826)
GO_REF:0000107		 RGD
Ensembl		 PMID:19056826 GO_REF:0000107 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444 		JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:15385968) RGD PMID:15385968 NCBI chr 1:95,341,465...95,346,921
Ensembl chr 1:95,341,620...95,346,920 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in IBA
ISO		 PMID:21873635
(PMID:12517771), (PMID:15385968), (PMID:17290226), (PMID:28453785)		 RGD PMID:12517771 PMID:15385968 PMID:17290226 PMID:28453785 PMID:21873635 RGD:13792537 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808 		JBrowse link
base-excision repair, DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig3 DNA ligase 3 involved_in IDA
IBA
ISO		 PMID:21873635
(PMID:24674627)
(PMID:19589734)		 RGD PMID:19589734 PMID:24674627 PMID:17412650 PMID:21873635 RGD:2302580, RGD:13792537 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    cellular process 18233
      cellular response to stimulus 8778
        cellular response to stress 2097
          DNA damage response 830
            DNA repair 525
              DNA ligation involved in DNA repair 5
                base-excision repair, DNA ligation 1
Path 2
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      cellular metabolic process 10124
        cellular aromatic compound metabolic process 5773
          nucleobase-containing compound metabolic process 5539
            nucleic acid metabolic process 4966
              DNA metabolic process 993
                DNA ligation 12
                  DNA ligation involved in DNA repair 5
                    base-excision repair, DNA ligation 1
paths to the root