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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA ligation involved in DNA repair
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Accession:GO:0051103 term browser browse the term
Definition:The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA repair.
Synonyms:related_synonym: DNA ligation during DNA repair



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DNA ligation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:12517771), (PMID:17290226)
MGI:1857732 (MGI:1312981|PMID:9823897)
RGD PMID:9823897 PMID:12517771 PMID:17290226 PMID:21873635 MGI:1312981, RGD:13792537 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Nhej1 nonhomologous end-joining factor 1 involved_in ISO
IEA
(PMID:19056826)
GO_REF:0000107
RGD
Ensembl
PMID:19056826 GO_REF:0000107 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in ISO
IEA
(PMID:15385968)
GO_REF:0000107
RGD
Ensembl
PMID:15385968 GO_REF:0000107 NCBI chr 1:95,341,465...95,346,921
Ensembl chr 1:95,341,620...95,346,920
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in IBA
ISO
PMID:21873635
(PMID:12517771), (PMID:15385968), (PMID:17290226), (PMID:28453785)
RGD PMID:12517771 PMID:15385968 PMID:17290226 PMID:28453785 PMID:21873635 RGD:13792537 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
base-excision repair, DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig3 DNA ligase 3 involved_in IDA
IBA
ISO
PMID:21873635
(PMID:19589734)
(PMID:24674627)
RGD PMID:19589734 PMID:24674627 PMID:17412650 PMID:21873635 RGD:2302580, RGD:13792537 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    metabolic process 11824
      cellular metabolic process 10719
        cellular macromolecule metabolic process 8208
          DNA metabolic process 913
            DNA ligation 13
              DNA ligation involved in DNA repair 5
                base-excision repair, DNA ligation 1
Path 2
Term Annotations click to browse term
  biological_process 19497
    metabolic process 11824
      nitrogen compound metabolic process 9994
        cellular nitrogen compound metabolic process 6560
          nucleobase-containing compound metabolic process 5410
            nucleic acid metabolic process 4926
              DNA metabolic process 913
                DNA ligation 13
                  DNA ligation involved in DNA repair 5
                    base-excision repair, DNA ligation 1
paths to the root