regulation of DNA-binding transcription factor activity - Ontology Report

Cdkn2a

cyclin-dependent kinase inhibitor 2A

107,823,323

107,832,405

Crebzf

CREB/ATF bZIP transcription factor

156,290,215

156,296,891

Fanca

FA complementation group A

56,067,548

56,126,075

Fancd2

FA complementation group D2

145,489,869

145,551,479

Hck

HCK proto-oncogene, Src family tyrosine kinase

148,579,917

148,623,026

Hmox1

heme oxygenase 1

14,508,634

14,515,455

RGD:8553479

Kdm5a

lysine demethylase 5A

152,892,388

152,972,196

Mapk3

mitogen activated protein kinase 3

198,192,773

198,198,975

Pou4f1

POU class 4 homeobox 1

88,618,255

88,622,712

Pou4f2

POU class 4 homeobox 2

33,160,180

33,163,821

RGD1565059

similar to hypothetical protein E130311K13

154,485,133

154,508,907

Stk36

serine/threonine kinase 36

81,880,175

81,908,014

Syk

spleen associated tyrosine kinase

12,614,311

12,669,568

Usp7

ubiquitin specific peptidase 7

6,930,462

7,019,910

Zbtb7a

zinc finger and BTB domain containing 7a

11,429,266

11,446,119

cytoplasmic sequestering of NF-kappaB

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Ccdc22

coiled-coil domain containing 22

15,742,978

15,754,925

Faf1

Fas associated factor 1

129,370,767

129,738,393

RGD:2298880
RGD:1624291
RGD:2298917
RGD:2298908
RGD:2298882

Nfkbia

NFKB inhibitor alpha

76,267,227

76,270,457

Nfkbib

NFKB inhibitor beta

86,941,073

86,948,845

RGD:2298908
RGD:2298917

Psmd10

proteasome 26S subunit, non-ATPase 10

112,323,188

112,328,642

Tmsb4x

thymosin beta 4, X-linked

28,593,405

28,617,267

cytoplasmic sequestering of transcription factor

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Creb3

cAMP responsive element binding protein 3

59,063,532

59,068,196

Keap1

Kelch-like ECH-associated protein 1

22,250,518

22,259,868

RGD:727319
RGD:13792537

Nfkbia

NFKB inhibitor alpha

76,267,227

76,270,457

Pkd1

polycystin 1, transient receptor potential channel interacting

13,914,057

13,962,008

Pkd2

polycystin 2, transient receptor potential cation channel

6,602,004

6,645,257

Sri

sorcin

23,004,657

23,029,233

Sufu

SUFU negative regulator of hedgehog signaling

266,143,766

266,241,742

Tacc3

transforming, acidic coiled-coil containing protein 3

82,336,283

82,350,069

Thra

thyroid hormone receptor alpha

86,657,285

86,684,935

negative regulation of CREB transcription factor activity

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Adgrg3

adhesion G protein-coupled receptor G3

10,392,001

10,422,606

RGD:1599733
RGD:13792537
RGD:1624291
RGD:1600115

Ddit3

DNA-damage inducible transcript 3

70,578,564

70,585,074

Eif2ak4

eukaryotic translation initiation factor 2 alpha kinase 4

110,159,624

110,245,382

Foxp3

forkhead box P3

15,753,175

15,768,648

Msx2

msh homeobox 2

11,683,862

11,689,527

Sik1

salt-inducible kinase 1

10,670,747

10,680,279

negative regulation of DNA-binding transcription factor activity

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Bhlhe40

basic helix-loop-helix family, member e40

140,703,619

140,709,319

Cebpg

CCAAT/enhancer binding protein gamma

91,286,956

91,297,459

RGD:1624291
RGD:8554148

Ctnnbip1

catenin, beta-interacting protein 1

166,464,170

166,513,030

Cys1

cystin 1

43,844,937

43,862,131

Ddit3

DNA-damage inducible transcript 3

70,578,564

70,585,074

RGD:6483365
RGD:1600115
RGD:1624291

Egln1

egl-9 family hypoxia-inducible factor 1

57,660,194

57,701,158

Eomes

eomesodermin

127,144,367

127,152,618

Esr1

estrogen receptor 1

41,192,029

41,594,799

Ezh2

enhancer of zeste 2 polycomb repressive complex 2 subunit

77,284,404

77,347,011

Flna

filamin A

156,460,785

156,487,245

Foxa2

forkhead box A2

142,383,084

142,387,493

Foxh1

forkhead box H1

117,730,307

117,733,076

Foxp3

forkhead box P3

15,753,175

15,768,648

Foxs1

forkhead box S1

148,406,509

148,407,778

Fzd6

frizzled class receptor 6

77,898,329

77,931,034

Gas6

growth arrest specific 6

81,213,364

81,243,824

Glis2

GLIS family zinc finger 2

11,154,459

11,177,063

Hand1

heart and neural crest derivatives expressed 1

43,250,729

43,253,296

Hand2

heart and neural crest derivatives expressed 2

36,371,489

36,373,551

Hdac2

histone deacetylase 2

43,084,870

43,108,198

Hdac3

histone deacetylase 3

31,073,057

31,094,347

Hdac4

histone deacetylase 4

99,052,945

99,299,715

Heyl

hes-related family bHLH transcription factor with YRPW motif-like

140,923,914

140,940,905

Hmox1

heme oxygenase 1

14,508,634

14,515,455

RGD:1601626

Hnf4a

hepatocyte nuclear factor 4, alpha

159,902,441

159,965,003

RGD:1625011

HR, lysine demethylase and nuclear receptor corepressor

52,241,801

52,261,276

RGD:1599577

Id1

inhibitor of DNA binding 1, HLH protein

148,214,623

148,216,715

Id2

inhibitor of DNA binding 2

44,360,077

44,361,908

Id3

inhibitor of DNA binding 3, HLH protein

154,489,603

154,491,172

Igf1r

insulin-like growth factor 1 receptor

128,924,921

129,213,816

Irak2

interleukin-1 receptor-associated kinase 2

145,594,575

145,651,066

Kat6a

lysine acetyltransferase 6A

73,942,669

74,020,750

Kdm1a

lysine demethylase 1A

154,909,003

154,965,171

Klf4

Kruppel like factor 4

72,283,311

72,287,669

LOC100910646

E3 ubiquitin-protein ligase RLIM-like

73,757,664

73,778,757

Mad2l2

mitotic arrest deficient 2 like 2

164,943,183

164,956,255

Map3k10

mitogen activated protein kinase kinase kinase 10

84,473,178

84,491,689

Med13

mediator complex subunit 13

73,702,327

73,787,084

Men1

menin 1

221,704,394

221,710,343

RGD:1624302
RGD:13792537
RGD:1600115
RGD:1624291

Nr0b1

nuclear receptor subfamily 0, group B, member 1

54,734,385

54,738,513

Nr0b2

nuclear receptor subfamily 0, group B, member 2

151,776,004

151,779,319

RGD:1600115
RGD:1624291
RGD:14390062

Nupr1

nuclear protein 1, transcriptional regulator

194,767,484

194,769,519

Paxip1

PAX interacting protein 1

3,956,931

4,008,326

Pbx1

PBX homeobox 1

86,390,741

86,671,460

Pex14

peroxisomal biogenesis factor 14

165,782,895

165,918,445

Phb2

prohibitin 2

157,230,769

157,235,375

Pias2

protein inhibitor of activated STAT, 2

73,479,863

73,524,956

Pim1

Pim-1 proto-oncogene, serine/threonine kinase

8,165,423

8,169,557

Pla2g10

phospholipase A2, group X

1,509,732

1,520,970

Pou4f2

POU class 4 homeobox 2

33,160,180

33,163,821

Prmt2

protein arginine methyltransferase 2

13,154,513

13,212,613

Prnp

prion protein

124,515,917

124,531,320

Prox1

prospero homeobox 1

108,382,536

108,444,107

Ptch1

patched 1

1,032,242

1,085,885

Pthlh

parathyroid hormone-like hormone

181,663,425

181,674,181

Rnf2

ring finger protein 2

68,829,714

68,859,920

Rpl11

ribosomal protein L11

154,390,809

154,394,412

RGD:11035228

Sfrp4

secreted frizzled-related protein 4

47,383,983

47,394,065

Sfrp5

secreted frizzled-related protein 5

261,442,108

261,446,570

Sigirr

single Ig and TIR domain containing

213,898,395

213,907,697

Sirt1

sirtuin 1

26,831,971

26,851,587

Smad7

SMAD family member 7

71,395,830

71,424,164

Sp100

SP100 nuclear antigen

92,675,103

92,718,489

Spop

speckle type BTB/POZ protein

83,231,187

83,311,987

Sufu

SUFU negative regulator of hedgehog signaling

266,143,766

266,241,742

Sumo1

small ubiquitin-like modifier 1

66,453,428

66,483,614

Taf3

TATA-box binding protein associated factor 3

72,240,785

72,393,448

Tbx6

T-box transcription factor 6

198,214,797

198,218,706

Tbxt

T-box transcription factor T

52,887,067

52,900,691

Tcf7l2

transcription factor 7 like 2

276,686,911

276,730,517

Thra

thyroid hormone receptor alpha

86,657,285

86,684,935

RGD:1580107

Thra_v2

thyroid hormone receptor alpha, variant 2

RGD:1580107

Tnfrsf4

TNF receptor superfamily member 4

173,447,784

173,450,474

Tnfsf4

TNF superfamily member 4

79,269,973

79,293,775

Trib1

tribbles pseudokinase 1

99,954,492

99,961,026

Twist1

twist family bHLH transcription factor 1

53,401,241

53,403,235

Wfs1

wolframin ER transmembrane glycoprotein

78,640,707

78,665,224

RGD:1624291
RGD:10047363

Wwp2

WW domain containing E3 ubiquitin protein ligase 2

39,543,246

39,614,624

Xcl1

X-C motif chemokine ligand 1

83,199,402

83,202,845

negative regulation of hh target transcription factor activity

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Enpp1

ectonucleotide pyrophosphatase/phosphodiesterase 1

21,748,201

21,813,205

negative regulation of NF-kappaB transcription factor activity

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Acod1

aconitate decarboxylase 1

93,612,968

93,622,322

Adora3

adenosine A3 receptor

208,336,909

208,379,217

Aim2

absent in melanoma 2

91,919,834

91,963,080

Anxa4

annexin A4

118,538,775

118,595,591

Arrb1

arrestin, beta 1

164,502,099

164,573,947

Arrb2

arrestin, beta 2

57,040,252

57,048,045

Brms1

BRMS1, transcriptional repressor and anoikis regulator

220,325,352

220,334,616

Cactin

cactin, spliceosome C complex subunit

11,258,526

11,266,509

Cat

catalase

93,379,872

93,412,058

Cd200

Cd200 molecule

60,371,617

60,398,450

Cdk5rap3

CDK5 regulatory subunit associated protein 3

84,780,644

84,789,800

Cdkn2a

cyclin-dependent kinase inhibitor 2A

107,823,323

107,832,405

Chp1

calcineurin-like EF-hand protein 1

111,354,506

111,389,998

Chuk

component of inhibitor of nuclear factor kappa B kinase complex

263,848,829

263,884,354

Cmklr1

chemerin chemokine-like receptor 1

48,743,556

48,796,582

Commd1

copper metabolism domain containing 1

107,664,321

107,759,974

Commd6

COMM domain containing 6

86,136,096

86,142,672

Commd7

COMM domain containing 7

149,101,242

149,115,227

RGD:1600115
RGD:13792537
RGD:1624291

Cyld

CYLD lysine 63 deubiquitinase

19,264,984

19,323,817

Cyp1b1

cytochrome P450, family 1, subfamily b, polypeptide 1

2,308,179

2,316,739

Dab2ip

DAB2 interacting protein

14,889,263

15,060,286

Dap

death-associated protein

84,275,884

84,328,998

Dnaja3

DnaJ heat shock protein family (Hsp40) member A3

11,059,701

11,085,186

Erbin

erbb2 interacting protein

33,880,860

33,952,806

Foxj1

forkhead box J1

105,282,090

105,289,396

Foxp3

forkhead box P3

15,753,175

15,768,648

Gfi1

growth factor independent 1 transcriptional repressor

3,058,035

3,073,332

Havcr2

hepatitis A virus cellular receptor 2

31,561,838

31,590,624

Irak1

interleukin-1 receptor-associated kinase 1

156,716,469

156,726,367

Irak2

interleukin-1 receptor-associated kinase 2

145,594,575

145,651,066

Irak3

interleukin-1 receptor-associated kinase 3

64,922,830

64,982,224

Itch

itchy E3 ubiquitin protein ligase

150,660,665

150,752,016

Klf4

Kruppel like factor 4

72,283,311

72,287,669

RGD:1600115
RGD:13792537
RGD:1624291

LOC108348098

breast cancer metastasis-suppressor 1 homolog

220,418,455

220,427,785

RGD:1600115

Lrrc14

leucine rich repeat containing 14

117,773,219

117,779,555

Map2k5

mitogen activated protein kinase kinase 5

68,055,976

68,282,656

RGD:8553940

Mturn

maturin, neural progenitor differentiation regulator homolog

84,854,341

84,875,300

Nfkbia

NFKB inhibitor alpha

76,267,227

76,270,457

Nfkbid

NFKB inhibitor delta

88,883,816

88,892,543

Nfkbil1

NFKB inhibitor like 1

4,823,590

4,839,202

Nlrc3

NLR family, CARD domain containing 3

11,809,531

11,844,184

Nlrc5

NLR family, CARD domain containing 5

10,904,381

11,006,202

Nlrp12

NLR family, pyrin domain containing 12

64,506,750

64,543,908

Nlrp1b

NLR family, pyrin domain containing 1B

57,755,957

57,847,867

Nlrp2

NLR family pyrin domain containing 2

73,082,648

73,121,118

Nlrp3

NLR family, pyrin domain containing 3

45,884,324

45,918,290

Nod2

nucleotide-binding oligomerization domain containing 2

19,342,061

19,389,366

Nr1h4

nuclear receptor subfamily 1, group H, member 4

30,003,429

30,162,095

Nwd1

NACHT and WD repeat domain containing 1

18,875,768

18,944,775

Otulin

OTU deubiquitinase with linear linkage specificity

80,267,724

80,293,204

Parp10

poly (ADP-ribose) polymerase family, member 10

117,291,592

117,300,878

Peli1

pellino E3 ubiquitin protein ligase 1

106,008,086

106,062,566

Pias4

protein inhibitor of activated STAT, 4

11,414,565

11,428,090

Pkhd1

PKHD1 ciliary IPT domain containing fibrocystin/polyductin

26,164,969

26,736,704

Prdx2

peroxiredoxin 2

26,084,816

26,090,095

Prmt2

protein arginine methyltransferase 2

13,154,513

13,212,613

Psmd10

proteasome 26S subunit, non-ATPase 10

112,323,188

112,328,642

Ptgis

prostaglandin I2 synthase

163,950,746

163,986,129

Pycard

PYD and CARD domain containing

199,438,029

199,439,062

Rbck1

RANBP2-type and C3HC4-type zinc finger containing 1

147,793,014

147,809,941

Rwdd3

RWD domain containing 3

224,710,351

224,723,136

Setd6

SET domain containing 6, protein lysine methyltransferase

9,758,613

9,766,333

Sirt1

sirtuin 1

26,831,971

26,851,587

Siva1

SIVA1, apoptosis-inducing factor

137,209,999

137,214,379

Tax1bp1

Tax1 binding protein 1

82,776,720

82,832,586

Tceal7

transcription elongation factor A like 7

106,774,954

106,777,072

Tlr9

toll-like receptor 9

114,916,122

114,920,171

Tmigd3

transmembrane and immunoglobulin domain containing 3

208,478,373

208,557,356

Tmsb4x

thymosin beta 4, X-linked

28,593,405

28,617,267

Tnfaip3

TNF alpha induced protein 3

14,401,103

14,416,369

Traf3

Tnf receptor-associated factor 3

135,610,698

135,720,247

Traip

TRAF-interacting protein

116,730,170

116,750,528

Trim21

tripartite motif-containing 21

167,686,148

167,708,735

Trim37

tripartite motif-containing 37

74,436,165

74,568,636

Trim40

tripartite motif-containing 40

2,169,674

2,178,477

RGD:8553878
RGD:1624291

Tut4

terminal uridylyl transferase 4

128,063,880

128,168,726

Ufl1

Ufm1-specific ligase 1

39,616,479

39,650,894

Usp7

ubiquitin specific peptidase 7

6,930,462

7,019,910

Zc3h12a

zinc finger CCCH type containing 12A

143,111,342

143,120,131

positive regulation of androgen receptor activity

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Bud31

BUD31 homolog

11,232,963

11,240,449

Park7

Parkinsonism associated deglycase

167,982,438

168,004,724

Rwdd1

RWD domain containing 1

27,534,361

27,552,225

Taf1

TATA-box binding protein associated factor 1

71,412,291

71,486,456

positive regulation of CREB transcription factor activity

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Adcy1

adenylate cyclase 1

87,311,970

87,429,880

Adcy8

adenylate cyclase 8

105,353,883

105,593,372

Adgrf1

adhesion G protein-coupled receptor F1

20,343,730

20,378,686

Cacna1d

calcium voltage-gated channel subunit alpha1 D

6,110,294

6,405,022

RGD:6906921

Camk1d

calcium/calmodulin-dependent protein kinase ID

76,532,611

76,938,956

Cd200

Cd200 molecule

60,371,617

60,398,450

Crebbp

CREB binding protein

11,590,994

11,721,039

Crtc1

CREB regulated transcription coactivator 1

20,740,746

20,798,145

Crtc2

CREB regulated transcription coactivator 2

189,615,928

189,625,646

Crtc3

CREB regulated transcription coactivator 3

142,398,248

142,500,562

RGD:13792537
RGD:1624291

Epha5

EPH receptor A5

25,589,312

25,958,258

RGD:8554330

Lpar5

lysophosphatidic acid receptor 5

157,581,000

157,596,454

Lrp8

LDL receptor related protein 8

127,404,348

127,476,636

Prkd1

protein kinase D1

71,035,017

71,349,531

Prkd2

protein kinase D2

78,767,911

78,796,223

Reln

reelin

9,347,533

9,774,257

Tssk4

testis-specific serine kinase 4

34,322,182

34,331,187

Vegfa

vascular endothelial growth factor A

17,340,341

17,355,681

positive regulation of DNA-binding transcription factor activity

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Abra

actin-binding Rho activating protein

80,792,615

80,796,683

Akt1

AKT serine/threonine kinase 1

137,218,398

137,239,970

Ankrd42

ankyrin repeat domain 42

157,419,117

157,461,588

Anxa3

annexin A3

14,371,921

14,426,503

App

amyloid beta precursor protein

24,425,013

24,641,872

Arhgef5

Rho guanine nucleotide exchange factor 5

72,710,775

72,736,415

Arid5b

AT-rich interaction domain 5B

21,713,900

21,881,193

Atf2

activating transcription factor 2

60,721,137

60,795,951

Bdnf

brain-derived neurotrophic factor

100,768,637

100,819,216

RGD:10047172

Cdkn2a

cyclin-dependent kinase inhibitor 2A

107,823,323

107,832,405

Cebpb

CCAAT/enhancer binding protein beta

164,424,502

164,425,933

Cops5

COP9 signalosome subunit 5

8,876,090

8,894,345

Csf3

colony stimulating factor 3

86,616,785

86,619,160

Csrp3

cysteine and glycine rich protein 3

104,147,205

104,166,389

RGD:10047266

Ctnnb1

catenin beta 1

129,601,511

129,628,378

Cytl1

cytokine like 1

77,805,137

77,810,147

Ddit3

DNA-damage inducible transcript 3

70,578,564

70,585,074

Ddr2

discoidin domain receptor tyrosine kinase 2

88,311,639

88,436,561

Ddx58

DEXD/H-box helicase 58

56,486,584

56,536,898

Dvl2

dishevelled segment polarity protein 2

56,609,810

56,619,269

Edn1

endothelin 1

22,136,814

22,143,745

Ep300

E1A binding protein p300

122,818,194

122,889,055

RGD:2311715
RGD:1624291

Esr1

estrogen receptor 1

41,192,029

41,594,799

Esr2

estrogen receptor 2

99,163,953

99,214,711

Fank1

fibronectin type III and ankyrin repeat domains 1

205,842,469

205,954,152

Fcgr2b

Fc fragment of IgG receptor IIb

89,329,298

89,343,916

Fosl1

FOS like 1, AP-1 transcription factor subunit

220,826,560

220,835,066

RGD:629541

Foxa1

forkhead box A1

78,516,579

78,549,669

RGD:8553956
RGD:1624291
RGD:1600115
RGD:8554426

Fzd1

frizzled class receptor 1

26,470,864

26,475,262

Fzd2

frizzled class receptor 2

90,550,147

90,552,057

Fzd4

frizzled class receptor 4

153,589,471

153,598,376

Gtf2a2

general transcription factor 2A subunit 2

76,422,341

76,435,587

Hcls1

hematopoietic cell specific Lyn substrate 1

66,736,966

66,759,402

Hdac2

histone deacetylase 2

43,084,870

43,108,198

Hdac4

histone deacetylase 4

99,052,945

99,299,715

Hdac5

histone deacetylase 5

90,140,183

90,169,853

Hipk2

homeodomain interacting protein kinase 2

66,438,390

66,625,183

Hmga2

high mobility group AT-hook 2

65,159,944

65,275,408

RGD:1601604

Hmgn3

high mobility group nucleosomal binding domain 3

90,628,203

90,665,055

Ifrd1

interferon-related developmental regulator 1

60,132,025

60,151,354

RGD:10047350

Il10

interleukin 10

47,738,933

47,743,392

Il1b

interleukin 1 beta

121,876,256

121,882,637

Il4

interleukin 4

38,963,979

38,969,531

Il5

interleukin 5

39,066,716

39,069,587

Il6

interleukin 6

3,043,231

3,047,807

Jak2

Janus kinase 2

247,398,667

247,457,521

RGD:1641932

Jmy

junction mediating and regulatory protein, p53 cofactor

23,026,506

23,097,702

Jun

Jun proto-oncogene, AP-1 transcription factor subunit

114,011,184

114,014,277

Jup

junction plakoglobin

88,280,517

88,307,451

Kdm1a

lysine demethylase 1A

154,909,003

154,965,171

Kit

KIT proto-oncogene receptor tyrosine kinase

35,072,131

35,149,638

LOC103695118

transcription initiation factor IIA subunit 2

Lrp5

LDL receptor related protein 5

218,816,833

218,920,147

Lrp6

LDL receptor related protein 6

168,194,054

168,323,962

Mavs

mitochondrial antiviral signaling protein

123,776,147

123,790,572

Mbtps2

membrane-bound transcription factor peptidase, site 2

40,258,933

40,309,047

Mid2

midline 2

112,019,897

112,121,980

Myocd

myocardin

51,682,053

51,781,458

Ncoa3

nuclear receptor coactivator 3

162,692,176

162,788,582

RGD:727330

Ndp

norrin cystine knot growth factor NDP

6,791,090

6,815,586

Neurod1

neuronal differentiation 1

66,414,314

66,417,617

Neurod2

neuronal differentiation 2

86,280,865

86,282,681

Neurog1

neurogenin 1

9,154,656

9,156,175

Neurog2

neurogenin 2

231,962,517

231,963,441

Neurog3

neurogenin 3

31,761,419

31,762,893

Nfam1

NFAT activating protein with ITAM motif 1

123,856,718

123,893,790

Ngf

nerve growth factor

204,886,158

204,939,523

RGD:8553977

Nkx2-2

NK2 homeobox 2

141,408,460

141,419,083

Nkx3-1

NK3 homeobox 1

51,065,316

51,067,908

Nodal

nodal growth differentiation factor

31,035,729

31,044,096

Park7

Parkinsonism associated deglycase

167,982,438

168,004,724

Phb2

prohibitin 2

157,230,769

157,235,375

Pink1

PTEN induced kinase 1

156,677,146

156,689,258

Plpp3

phospholipid phosphatase 3

124,690,214

124,765,499

Pparg

peroxisome proliferator-activated receptor gamma

147,274,055

147,399,383

Ppargc1a

PPARG coactivator 1 alpha

63,095,291

63,190,688

Ppargc1b

PPARG coactivator 1 beta

56,626,725

56,650,524

Ppp2r5b

protein phosphatase 2, regulatory subunit B', beta

221,597,294

221,605,467

RGD:8553977

Ppp3ca

protein phosphatase 3 catalytic subunit alpha

241,909,332

242,186,861

Pprc1

PPARG related coactivator 1

265,809,892

265,826,319

Prkd2

protein kinase D2

78,767,911

78,796,223

Pten

phosphatase and tensin homolog

251,421,814

251,487,634

Pycard

PYD and CARD domain containing

199,438,029

199,439,062

Rgcc

regulator of cell cycle

61,551,861

61,564,695

Rnf41

ring finger protein 41

2,827,242

2,854,230

Sav1

salvador family WW domain containing protein 1

92,376,470

92,398,678

RGD:1600115

Smarca4

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

22,648,323

22,739,468

Smarcb1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

13,679,955

13,702,821

Sp100

SP100 nuclear antigen

92,675,103

92,718,489

Srf

serum response factor

16,737,637

16,747,226

Sting1

stimulator of interferon response cGAMP interactor 1

28,529,537

28,535,828

Stk3

serine/threonine kinase 3

73,617,926

73,883,896

Taf12

TATA-box binding protein associated factor 12

150,459,701

150,476,521

Tcf3

transcription factor 3

12,146,642

12,168,400

Tfdp1

transcription factor Dp-1

81,088,642

81,127,244

Tlr4

toll-like receptor 4

82,587,424

82,601,056

RGD:1598594

Tnf

tumor necrosis factor

5,189,382

5,192,000

Tnfrsf11a

TNF receptor superfamily member 11A

25,778,306

25,835,802

Tnfsf11

TNF superfamily member 11

60,482,527

60,512,704

Traf2

Tnf receptor-associated factor 2

2,746,061

2,770,690

Traf5

TNF receptor-associated factor 5

110,758,556

110,801,871

Traf6

TNF receptor associated factor 6

91,252,829

91,271,607

Trim14

tripartite motif-containing 14

62,128,941

62,154,424

Trim15

tripartite motif containing 15

2,194,293

2,203,636

Trim21

tripartite motif-containing 21

167,686,148

167,708,735

Trim25

tripartite motif-containing 25

76,343,847

76,362,159

Trim26

tripartite motif-containing 26

2,201,685

2,224,481

Trim27

tripartite motif-containing 27

45,613,863

45,626,212

Trim31

tripartite motif-containing 31

2,146,245

2,159,875

Trim32

tripartite motif-containing 32

81,431,554

81,449,023

Trim34

tripartite motif-containing 34

169,433,539

169,445,041

Trim37

tripartite motif-containing 37

74,436,165

74,568,636

Trim38

tripartite motif containing 38

43,600,006

43,607,879

Trim5

tripartite motif-containing 5

169,446,774

169,463,760

Trim62

tripartite motif-containing 62

147,068,725

147,099,024

Trim8

tripartite motif-containing 8

266,255,797

266,270,694

Ube2i

ubiquitin-conjugating enzyme E2I

14,618,615

14,639,274

RGD:2301354

Wnt1

Wnt family member 1

140,464,999

140,469,046

Wnt10b

Wnt family member 10B

140,448,284

140,466,159

Wnt2

Wnt family member 2

45,286,845

45,332,899

Wnt3a

Wnt family member 3A

45,598,898

45,643,151

Zic2

Zic family member 2

108,908,366

108,913,812

positive regulation of hh target transcription factor activity

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Shh

sonic hedgehog signaling molecule

718,538

727,691

Smo

smoothened, frizzled class receptor

57,019,941

57,041,779

Stk36

serine/threonine kinase 36

81,880,175

81,908,014

positive regulation of NF-kappaB transcription factor activity

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Adam8

ADAM metallopeptidase domain 8

212,317,510

212,332,895

Ager

advanced glycosylation end product-specific receptor

4,363,152

4,366,079

Aim2

absent in melanoma 2

91,919,834

91,963,080

Amh

anti-Mullerian hormone

11,775,155

11,777,503

RGD:70295

Ankrd42

ankyrin repeat domain 42

157,419,117

157,461,588

App

amyloid beta precursor protein

24,425,013

24,641,872

androgen receptor

67,656,253

67,828,998

Arhgef2

Rho/Rac guanine nucleotide exchange factor 2

187,964,100

188,022,847

Bcl10

BCL10, immune signaling adaptor

251,805,392

251,814,957

Camk2a

calcium/calmodulin-dependent protein kinase II alpha

56,193,978

56,295,869

Capn3

calpain 3

112,227,486

112,278,408

Card11

caspase recruitment domain family, member 11

15,700,600

15,844,512

Card14

caspase recruitment domain family, member 14

108,440,480

108,469,012

Card9

caspase recruitment domain family, member 9

3,798,346

3,806,841

Carm1

coactivator-associated arginine methyltransferase 1

22,577,723

22,622,555

Cat

catalase

93,379,872

93,412,058

Cav1

caveolin 1

44,597,123

44,630,206

Cd36

CD36 molecule

14,150,309

14,191,498

Cd40

CD40 molecule

161,519,789

161,534,943

Cd40lg

CD40 ligand

159,703,703

159,714,886

Cd84

CD84 molecule

90,241,369

90,283,625

Cflar

CASP8 and FADD-like apoptosis regulator

65,534,608

65,586,395

Chuk

component of inhibitor of nuclear factor kappa B kinase complex

263,848,829

263,884,354

Cib1

calcium and integrin binding 1

142,014,962

142,020,461

Clock

clock circadian regulator

34,418,226

34,502,218

Clu

clusterin

42,626,612

42,665,858

Crhr2

corticotropin releasing hormone receptor 2

85,286,371

85,329,374

RGD:5130956

Crnn

cornulin

193,427,097

193,432,070

Cth

cystathionine gamma-lyase

264,266,959

264,293,040

Cx3cl1

C-X3-C motif chemokine ligand 1

10,644,267

10,654,861

Cx3cr1

C-X3-C motif chemokine receptor 1

128,740,756

128,754,514

RGD:4892026

Ddrgk1

DDRGK domain containing 1

123,195,580

123,206,828

Dhx33

DEAH-box helicase 33

57,622,022

57,638,485

Dhx9

DExH-box helicase 9

70,885,503

70,922,278

Eda

ectodysplasin-A

69,730,123

70,222,693

Eda2r

ectodysplasin A2 receptor

66,560,200

66,602,509

Eif2ak2

eukaryotic translation initiation factor 2-alpha kinase 2

1,428,845

1,466,193

Fer

FER tyrosine kinase

111,557,804

111,868,583

Flot1

flotillin 1

3,427,890

3,438,418

Flot2

flotillin 2

65,304,901

65,329,332

Grem1

gremlin 1, DAN family BMP antagonist

105,203,309

105,214,989

Hspa1a

heat shock protein family A (Hsp70) member 1A

4,875,834

4,881,751

Hspa1b

heat shock protein family A (Hsp70) member 1B

4,877,638

4,880,112

RGD:1624291
RGD:13792537
RGD:1600115
RGD:7495757

Icam1

intercellular adhesion molecule 1

22,035,287

22,047,049

RGD:1600239

Ikbkb

inhibitor of nuclear factor kappa B kinase subunit beta

74,177,233

74,230,809

Ikbkg

inhibitor of nuclear factor kappa B kinase regulatory subunit gamma

156,254,187

156,280,046

Il18

interleukin 18

55,009,666

55,016,286

Il18r1

interleukin 18 receptor 1

47,184,404

47,217,403

Il18rap

interleukin 18 receptor accessory protein

47,225,543

47,255,805

Il1b

interleukin 1 beta

121,876,256

121,882,637

RGD:1600115
RGD:13792537
RGD:1624291

Il1rap

interleukin 1 receptor accessory protein

77,456,648

77,593,208

Il6

interleukin 6

3,043,231

3,047,807

Il6r

interleukin 6 receptor

189,196,180

189,255,987

Ins2

insulin 2

215,856,967

215,858,034

Irak1

interleukin-1 receptor-associated kinase 1

156,716,469

156,726,367

Irak2

interleukin-1 receptor-associated kinase 2

145,594,575

145,651,066

Irak3

interleukin-1 receptor-associated kinase 3

64,922,830

64,982,224

Itgb2

integrin subunit beta 2

11,777,773

11,815,647

RGD:1600239

Kras

KRAS proto-oncogene, GTPase

179,482,562

179,515,483

RGD:1600488

Lamtor5

late endosomal/lysosomal adaptor, MAPK and MTOR activator 5

210,034,095

210,039,451

Lgals9

galectin 9

64,737,022

64,760,195

RGD:1600115
RGD:13792537
RGD:13800534

LOC100359583

hypothetical protein LOC100359583

89,873,071

89,874,033

RGD:10059606

LOC103694380

tumor necrosis factor-like

4,855,792

4,858,447

Lrrfip1

LRR binding FLII interacting protein 1

98,139,484

98,268,148

Lrrfip2

LRR binding FLII interacting protein 2

119,381,666

119,484,125

Ltf

lactotransferrin

119,290,416

119,313,261

Malt1

MALT1 paracaspase

61,108,712

61,162,446

Map3k13

mitogen-activated protein kinase kinase kinase 13

82,744,391

82,938,357

Mavs

mitochondrial antiviral signaling protein

123,776,147

123,790,572

Mid2

midline 2

112,019,897

112,121,980

Mtdh

metadherin

72,771,018

72,830,599

Mtpn

myotrophin

63,012,009

63,039,422

RGD:8553542

Myd88

MYD88, innate immune signal transduction adaptor

128,022,512

128,027,462

Nlrc4

NLR family, CARD domain containing 4

22,167,874

22,194,755

Nlrp3

NLR family, pyrin domain containing 3

45,884,324

45,918,290

Nod1

nucleotide-binding oligomerization domain containing 1

85,123,965

85,175,206

Nod2

nucleotide-binding oligomerization domain containing 2

19,342,061

19,389,366

Npm1

nucleophosmin 1

18,080,949

18,091,062

Ntrk1

neurotrophic receptor tyrosine kinase 1

187,143,568

187,160,373

Pla2g1b

phospholipase A2 group IB

46,879,346

46,890,234

Prdx3

peroxiredoxin 3

282,238,774

282,251,193

Prkcb

protein kinase C, beta

192,233,569

192,575,339

Prkch

protein kinase C, eta

96,479,243

96,677,368

Prkci

protein kinase C, iota

115,941,998

116,002,550

Prkcq

protein kinase C, theta

70,971,915

71,105,286

Prkcz

protein kinase C, zeta

172,658,071

172,769,492

RGD:8554313

Prkd1

protein kinase D1

71,035,017

71,349,531

Prkd2

protein kinase D2

78,767,911

78,796,223

Psma6

proteasome 20S subunit alpha 6

76,174,460

76,205,429

Ptma

prothymosin alpha

93,545,396

93,549,436

RGD:10059606

Pycard

PYD and CARD domain containing

199,438,029

199,439,062

Rab7b

Rab7b, member RAS oncogene family

48,456,143

48,483,714

Rbck1

RANBP2-type and C3HC4-type zinc finger containing 1

147,793,014

147,809,941

Rela

RELA proto-oncogene, NF-kB subunit

220,992,770

221,003,249

Rhebl1

RHEB like 1

140,552,704

140,556,980

Ripk1

receptor interacting serine/threonine kinase 1

31,537,580

31,569,904

Ripk2

receptor-interacting serine-threonine kinase 2

29,838,713

29,870,390

Ripk3

receptor-interacting serine-threonine kinase 3

34,470,796

34,479,741

Ripk4

receptor-interacting serine-threonine kinase 4

38,251,991

38,274,234

Rnf25

ring finger protein 25

81,873,293

81,880,172

Rnf31

ring finger protein 31

34,270,037

34,282,385

Ror1

receptor tyrosine kinase-like orphan receptor 1

118,892,874

119,239,528

Rps3

ribosomal protein S3

164,435,868

164,441,167

Rps6ka5

ribosomal protein S6 kinase A5

124,557,892

124,735,787

Rtkn2

rhotekin 2

21,919,486

22,004,279

Slco3a1

solute carrier organic anion transporter family, member 3a1

135,790,854

136,073,640

RGD:1624291
RGD:1600115
RGD:14397556

Sphk1

sphingosine kinase 1

105,498,728

105,504,401

Stat3

signal transducer and activator of transcription 3

88,790,401

88,842,263

RGD:13800534

Terf2ip

TERF2 interacting protein

44,231,317

44,238,406

Tfrc

transferrin receptor

71,397,423

71,419,263

Tgfb1

transforming growth factor, beta 1

82,480,875

82,497,196

RGD:1579751

Tgfbr3

transforming growth factor beta receptor 3

3,506,416

3,680,508

Ticam1

toll-like receptor adaptor molecule 1

10,780,185

10,790,280

Tirap

TIR domain containing adaptor protein

36,382,029

36,399,625

Tlr2

toll-like receptor 2

182,840,171

182,846,061

Tlr3

toll-like receptor 3

50,016,466

50,031,011

RGD:1598593
RGD:1600115
RGD:1624291

Tlr4

toll-like receptor 4

82,587,424

82,601,056

Tlr6

toll-like receptor 6

45,024,351

45,041,188

Tlr9

toll-like receptor 9

114,916,122

114,920,171

RGD:1600115
RGD:13792537
RGD:13800534
RGD:1624291

Tnf

tumor necrosis factor

5,189,382

5,192,000

Tnfrsf11a

TNF receptor superfamily member 11A

25,778,306

25,835,802

Tnfrsf8

TNF receptor superfamily member 8

163,186,349

163,231,578

RGD:730027

Tnfsf11

TNF superfamily member 11

60,482,527

60,512,704

Tnfsf18

TNF superfamily member 18

79,378,412

79,388,687

Tradd

TNFRSF1A-associated via death domain

37,214,461

37,221,099

Traf1

TNF receptor-associated factor 1

14,003,340

14,022,955

Traf2

Tnf receptor-associated factor 2

2,746,061

2,770,690

RGD:2298798
RGD:1624291

Traf5

TNF receptor-associated factor 5

110,758,556

110,801,871

Traf6

TNF receptor associated factor 6

91,252,829

91,271,607

Trappc9

trafficking protein particle complex 9

113,986,363

114,309,090

Trim13

tripartite motif-containing 13

41,897,191

41,936,545

Trim14

tripartite motif-containing 14

62,128,941

62,154,424

Trim15

tripartite motif containing 15

2,194,293

2,203,636

Trim25

tripartite motif-containing 25

76,343,847

76,362,159

Trim32

tripartite motif-containing 32

81,431,554

81,449,023

Trim37

tripartite motif-containing 37

74,436,165

74,568,636

Trim38

tripartite motif containing 38

43,600,006

43,607,879

Trim5

tripartite motif-containing 5

169,446,774

169,463,760

Trim52

tripartite motif-containing 52

90,364,517

90,388,295

Trim62

tripartite motif-containing 62

147,068,725

147,099,024

Trim8

tripartite motif-containing 8

266,255,797

266,270,694

Ube2n

ubiquitin-conjugating enzyme E2N

36,610,147

36,640,190

Ube2v1

ubiquitin conjugating enzyme E2 V1

164,343,833

164,366,684

Wnt5a

Wnt family member 5A

4,469,451

4,490,271

Zbtb7a

zinc finger and BTB domain containing 7a

11,429,266

11,446,119