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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA metabolic process
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Accession:GO:0051052 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving DNA.
Synonyms:exact_synonym: regulation of DNA metabolism


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DNA hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 ISO RGD PMID:21682946 RGD:9588311 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029
JBrowse link
G MORC1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO (MGI:5694015|PMID:25503965) MGI PMID:25503965 MGI:5694015 NCBI chr33:14,120,370...14,302,995
Ensembl chr33:14,147,504...14,291,024
JBrowse link
hypermethylation of CpG island term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3A DNA methyltransferase 3 alpha involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr17:19,489,524...19,563,074
Ensembl chr17:19,492,193...19,563,902
JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr 1:112,129,116...112,138,714
Ensembl chr 1:112,103,825...112,138,559
JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr33:23,458,369...23,659,878
Ensembl chr33:23,463,767...23,659,666
JBrowse link
G SPI1 Spi-1 proto-oncogene involved_in ISO (PMID:20139074) UniProt PMID:20139074 NCBI chr18:42,253,849...42,269,497
Ensembl chr18:42,253,811...42,269,727
JBrowse link
hypomethylation of CpG island term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:12,600,140...12,681,905
Ensembl chr34:12,600,233...12,675,910
JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5607719|PMID:20961378) Ensembl
MGI
PMID:20961378 GO_REF:0000107 MGI:5607719 NCBI chr15:2,669,546...2,708,480
Ensembl chr15:2,670,326...2,709,160
JBrowse link
negative regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DFFA DNA fragmentation factor subunit alpha acts_upstream_of_or_within ISO (MGI:2182584|PMID:10601318), (MGI:3029597|PMID:14663139)
(PMID:15572351)
MGI PMID:10601318 PMID:14663139 PMID:15572351 MGI:2182584 MGI:3029597 NCBI chr 2:85,364,819...85,372,473
Ensembl chr 2:85,364,851...85,373,772
JBrowse link
G NMNAT1 nicotinamide nucleotide adenylyltransferase 1 ISO RGD PMID:27184051 RGD:13781945 NCBI chr 5:63,122,379...63,152,078
Ensembl chr 5:63,122,498...63,151,661
JBrowse link
G PAM16 presequence translocase associated motor 16 ISO RGD PMID:24069394 RGD:13462066 NCBI chr 6:37,040,484...37,047,708 JBrowse link
negative regulation of deoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DFFA DNA fragmentation factor subunit alpha involved_in ISO (PMID:19944011) CAFA PMID:19944011 NCBI chr 2:85,364,819...85,372,473
Ensembl chr 2:85,364,851...85,373,772
JBrowse link
negative regulation of DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVRL1 activin A receptor like type 1 involved_in ISO (PMID:19366699) BHF-UCL PMID:19366699 NCBI chr27:3,075,373...3,090,549
Ensembl chr27:3,076,124...3,092,469
JBrowse link
G ADIPOQ adiponectin, C1Q and collagen domain containing involved_in ISO (PMID:12070119) UniProt PMID:12070119 NCBI chr34:19,398,310...19,410,519
Ensembl chr34:19,354,825...19,409,844
JBrowse link
G AHR aryl hydrocarbon receptor ISO RGD PMID:12193573 RGD:625678 NCBI chr14:31,743,704...31,793,484
Ensembl chr14:31,686,170...31,791,444
JBrowse link
G ANKRD1 ankyrin repeat domain 1 involved_in ISO (PMID:11139470) BHF-UCL PMID:11139470 NCBI chr28:5,569,120...5,578,393
Ensembl chr28:5,569,501...5,601,956
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in ISO (PMID:19366699) BHF-UCL PMID:19366699 NCBI chr37:11,342,292...11,540,199
Ensembl chr37:11,342,384...11,533,024
JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A involved_in ISO (PMID:11595739) UniProt PMID:11595739 NCBI chr12:5,746,898...5,755,103
Ensembl chr12:5,745,852...5,892,281
JBrowse link
G CHEK1 checkpoint kinase 1 ISO RGD PMID:12429946 RGD:2316115 NCBI chr 5:8,878,511...8,910,626
Ensembl chr 5:8,879,147...8,907,669
JBrowse link
G DACH1 dachshund family transcription factor 1 involved_in ISO (PMID:16980615) CACAO PMID:16980615 NCBI chr22:25,690,700...25,934,449
Ensembl chr22:25,726,597...25,934,550
JBrowse link
G DNAJC2 DnaJ heat shock protein family (Hsp40) member C2 acts_upstream_of_or_within ISO (MGI:76992|PMID:7559602) MGI PMID:7559602 MGI:76992 NCBI chr18:16,866,795...16,894,143
Ensembl chr18:16,887,901...16,893,857
JBrowse link
G DUSP1 dual specificity phosphatase 1 ISO RGD PMID:10446064 RGD:7771571 NCBI chr 4:39,588,833...39,591,065
Ensembl chr 4:39,588,339...39,590,514
JBrowse link
G GDF2 growth differentiation factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:34,996,767...35,001,094
Ensembl chr 4:34,997,579...35,001,203
JBrowse link
G GJA1 gap junction protein alpha 1 ISO RGD PMID:14702389 RGD:8662403 NCBI chr 1:60,941,772...60,944,694
Ensembl chr 1:60,929,097...60,942,936
JBrowse link
G KCNK2 potassium two pore domain channel subfamily K member 2 ISO RGD PMID:23271285 RGD:9831181 NCBI chr 7:12,893,654...13,092,319
Ensembl chr 7:12,894,149...13,090,110
JBrowse link
G NIBAN2 niban apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:55,802,010...55,853,960
Ensembl chr 9:55,802,014...55,852,540
JBrowse link
G NPPC natriuretic peptide C ISO RGD PMID:12746286 RGD:1580115 NCBI chr25:43,714,545...43,718,969
Ensembl chr25:43,717,939...43,718,996
JBrowse link
G RGN regucalcin ISO RGD PMID:11500948 RGD:9590199 NCBI chr  X:40,697,292...40,715,491
Ensembl chr  X:40,698,768...40,715,490
JBrowse link
G TP53 tumor protein p53 ISO RGD PMID:11502571 RGD:70312 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
negative regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RGN regucalcin ISO RGD PMID:2001740 RGD:9590215 NCBI chr  X:40,697,292...40,715,491
Ensembl chr  X:40,698,768...40,715,490
JBrowse link
negative regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207) UniProt PMID:17143267 PMID:21407207 PMID:22722204 MGI:5432962 MGI:5447615 MGI:5465527 NCBI chr27:37,114,192...37,196,434 JBrowse link
G GATA3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:3046385|PMID:15087456) MGI PMID:15087456 MGI:3046385 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760
JBrowse link
G TRIM28 tripartite motif containing 28 acts_upstream_of_or_within ISO (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
negative regulation of DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUB1 SUB1 regulator of transcription involved_in ISO (PMID:28369605) CACAO PMID:28369605 NCBI chr 4:74,931,105...74,951,707
Ensembl chr 4:74,933,620...74,951,573
JBrowse link
negative regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3L DNA methyltransferase 3 like involved_in ISO (MGI:5553039|PMID:24074865) UniProt PMID:24074865 MGI:5553039 NCBI chr31:38,099,100...38,111,432 JBrowse link
G KMT2A lysine methyltransferase 2A involved_in ISO (PMID:20010842) UniProt PMID:20010842 NCBI chr 5:15,212,559...15,302,825
Ensembl chr 5:15,217,348...15,270,971
JBrowse link
negative regulation of DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,091,950...24,092,694 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
G LIG3 DNA ligase 3 acts_upstream_of_or_within ISO (MGI:3625660|PMID:16648486) MGI PMID:16648486 MGI:3625660 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193
JBrowse link
G MSH2 mutS homolog 2 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1351797|PMID:10545954), (MGI:74950|PMID:7628020)
GO_Central
MGI
PMID:7628020 PMID:10545954 PMID:21873635 MGI:1351797 MGI:74950 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210
JBrowse link
G MSH3 mutS homolog 3 involved_in ISO (PMID:17715146) BHF-UCL PMID:17715146 NCBI chr 3:26,335,788...26,520,633
Ensembl chr 3:26,336,403...26,518,521
JBrowse link
G MSH6 mutS homolog 6 acts_upstream_of_or_within
involved_in
ISO (MGI:1351797|PMID:10545954)
(PMID:17715146)
MGI
BHF-UCL
PMID:10545954 PMID:17715146 MGI:1351797 NCBI chr10:49,825,330...49,838,036
Ensembl chr10:49,803,898...49,838,028
JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (MGI:2448116|PMID:12509447) MGI PMID:12509447 MGI:2448116 NCBI chr20:9,163,322...9,271,224
Ensembl chr20:9,163,428...9,263,730
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr24:47,219,977...47,248,791 JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 involved_in ISO (PMID:22704558) UniProt PMID:22704558 NCBI chr19:38,003,273...38,302,598
Ensembl chr19:37,957,421...38,301,888
JBrowse link
negative regulation of DNA recombination at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TERF2IP TERF2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:75,164,410...75,172,959
Ensembl chr 5:75,165,191...75,172,838
JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in ISO (PMID:20725033) UniProt PMID:20725033 NCBI chr 3:40,225,531...40,226,507
Ensembl chr 3:40,225,474...40,226,612
Ensembl chr18:40,225,474...40,226,612
JBrowse link
G RNF169 ring finger protein 169 involved_in ISO (PMID:22492721), (PMID:22733822)
(PMID:22742833)
UniProt PMID:22492721 PMID:22733822 PMID:22742833 NCBI chr21:23,574,478...23,655,305
Ensembl chr21:23,579,370...23,655,290
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 involved_in ISO (PMID:22884692) UniProt PMID:22884692 NCBI chr25:42,060,103...42,208,326
Ensembl chr25:42,060,991...42,208,054
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17690110) BHF-UCL PMID:17690110
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:3,887,408...4,023,364
Ensembl chr13:3,879,220...4,023,955
JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CGAS cyclic GMP-AMP synthase involved_in ISO (MGI:6241455|PMID:30356214)
(PMID:30356214)
UniProt PMID:30356214 MGI:6241455 NCBI chr12:35,511,920...35,528,759
Ensembl chr12:35,512,860...35,528,596
JBrowse link
G FANCB FA complementation group B acts_upstream_of_or_within ISO (MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:5648586 NCBI chr  X:10,690,826...11,140,838
Ensembl chr  X:11,095,200...11,141,029
JBrowse link
G FBH1 F-box DNA helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:30,047,994...30,095,761
Ensembl chr 2:30,048,567...30,095,696
JBrowse link
G HELB DNA helicase B involved_in ISO (MGI:5766842|PMID:26774285)
(PMID:26774285)
UniProt PMID:26774285 MGI:5766842 NCBI chr10:8,766,023...8,797,055
Ensembl chr10:8,765,617...8,798,092
JBrowse link
G KLHL15 kelch like family member 15 involved_in ISO (PMID:27561354) UniProt PMID:27561354 NCBI chr  X:19,617,629...19,651,076
Ensembl chr  X:19,618,569...19,650,728
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
JBrowse link
G MAGEF1 MAGE family member F1 involved_in ISO (PMID:29225034) UniProt PMID:29225034 NCBI chr34:17,543,381...17,545,089
Ensembl chr34:17,543,906...17,544,868
JBrowse link
G PARPBP PARP1 binding protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:40,972,098...41,039,044
Ensembl chr15:40,976,598...41,036,068
JBrowse link
G POLQ DNA polymerase theta involved_in ISO (MGI:5621198|PMID:25642960)
(PMID:25642963)
UniProt PMID:25642960 PMID:25642963 MGI:5621198 NCBI chr33:24,713,174...24,837,113
Ensembl chr33:24,714,086...24,837,402
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:80,146,335...80,234,732
Ensembl chr  X:80,146,040...80,235,739
JBrowse link
G RECQL5 RecQ like helicase 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5648586|PMID:25520194) Ensembl
MGI
PMID:25520194 GO_REF:0000107 MGI:5648586 NCBI chr 9:4,902,753...4,940,442
Ensembl chr 9:4,903,477...4,940,436
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in ISO (MGI:5468037|PMID:23306437), (MGI:5476381|PMID:23333305)
(PMID:23333306)
UniProt PMID:23306437 PMID:23333305 PMID:23333306 MGI:5468037 MGI:5476381 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
JBrowse link
G SHLD3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:25294876) UniProt PMID:25294876 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
JBrowse link
G UBQLN4 ubiquilin 4 involved_in ISO (PMID:30612738) UniProt PMID:30612738 NCBI chr 7:41,764,209...41,778,457
Ensembl chr 7:41,764,253...41,777,002
JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUNIP aurora kinase A and ninein interacting protein involved_in ISO (PMID:29042561) UniProt PMID:29042561 NCBI chr 2:74,097,435...74,116,824
Ensembl chr 2:74,097,508...74,118,085
JBrowse link
G CYREN cell cycle regulator of NHEJ involved_in ISO (PMID:28959974) UniProt PMID:28959974 NCBI chr16:12,994,508...13,003,632
Ensembl chr16:12,994,479...12,998,435
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:19549901) UniProt PMID:19549901 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HSF1 heat shock transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252
JBrowse link
G NUDT16L1 nudix hydrolase 16 like 1 involved_in ISO (PMID:28241136) UniProt PMID:28241136 NCBI chr 6:36,711,351...36,713,931
Ensembl chr 6:36,711,671...36,713,896
Ensembl chr 6:36,711,671...36,713,896
JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OGG1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO (PMID:19506022) MGI PMID:19506022 NCBI chr20:8,486,150...8,491,448
Ensembl chr20:8,480,005...8,491,264
JBrowse link
negative regulation of endodeoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GZMA granzyme A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:42,490,712...42,498,655
Ensembl chr 2:42,490,069...42,498,464
JBrowse link
negative regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in ISO (MGI:6214451|PMID:26000965) UniProt PMID:26000965 MGI:6214451 NCBI chr20:37,767,336...37,774,269
Ensembl chr20:37,767,505...37,773,770
JBrowse link
negative regulation of isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THOC1 THO complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:67,082,100...67,136,592
Ensembl chr 7:67,082,231...67,136,525
JBrowse link
negative regulation of isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL6 BCL6 transcription repressor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1345885|PMID:10490661) Ensembl
MGI
PMID:10490661 GO_REF:0000107 MGI:1345885 NCBI chr34:20,112,302...20,135,705
Ensembl chr34:20,113,322...20,124,704
JBrowse link
G FOXP3 forkhead box P3 acts_upstream_of_or_within ISO (MGI:3695768|PMID:16275384) MGI PMID:16275384 MGI:3695768 NCBI chr  X:42,331,229...42,362,841
Ensembl chr  X:42,344,108...42,350,758
JBrowse link
G NDFIP1 Nedd4 family interacting protein 1 acts_upstream_of_or_within ISO (MGI:3694584|PMID:17137798) MGI PMID:17137798 MGI:3694584 NCBI chr 2:36,978,148...37,065,247
Ensembl chr 2:36,961,024...37,064,303
JBrowse link
negative regulation of mitochondrial DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FLCN folliculin involved_in ISO (MGI:5463828|PMID:23150719) UniProt PMID:23150719 MGI:5463828 NCBI chr 5:42,176,093...42,195,718
Ensembl chr 5:42,176,291...42,195,711
JBrowse link
negative regulation of mitotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKLE1 ankyrin repeat and LEM domain containing 1 involved_in ISO (MGI:5800654|PMID:27010503) UniProt PMID:27010503 MGI:5800654 NCBI chr20:45,461,135...45,465,922
Ensembl chr20:45,461,676...45,465,417
JBrowse link
G BLM BLM RecQ like helicase acts_upstream_of_or_within
involved_in
ISO (MGI:3700903|PMID:17210642)
(MGI:1312959|PMID:9808625), (MGI:3655554|PMID:16914751)
(MGI:5800654|PMID:27010503)
(MGI:1928200|PMID:11101838)
MGI
UniProt
PMID:9808625 PMID:11101838 PMID:16914751 PMID:17210642 PMID:27010503 MGI:1312959 MGI:1928200 MGI:3655554 MGI:3700903 MGI:5800654 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G MLH1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3513725|PMID:15480418) Ensembl
MGI
PMID:15480418 GO_REF:0000107 MGI:3513725 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
negative regulation of protection from non-homologous end joining at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (PMID:14690602) BHF-UCL PMID:14690602 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:14690602) BHF-UCL PMID:14690602 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
JBrowse link
G XRCC4 X-ray repair cross complementing 4 involved_in ISO (MGI:3758502|PMID:14690602) BHF-UCL PMID:14690602 MGI:3758502 NCBI chr 3:24,316,598...24,547,463
Ensembl chr 3:24,269,974...24,533,465
JBrowse link
negative regulation of t-circle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (PMID:25620558)
(MGI:5522574|PMID:24115439), (MGI:5645200|PMID:22579284)
BHF-UCL PMID:22579284 PMID:24115439 PMID:25620558 MGI:5522574 MGI:5645200 NCBI chr24:47,219,977...47,248,791 JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in ISO (PMID:15507207) BHF-UCL PMID:15507207 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
G XRCC5 X-ray repair cross complementing 5 involved_in ISO (PMID:19581589) BHF-UCL PMID:19581589 NCBI chr37:23,095,769...23,185,680
Ensembl chr37:23,095,754...23,185,586
JBrowse link
negative regulation of telomerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CERS1 ceramide synthase 1 involved_in ISO (PMID:17548428) UniProt PMID:17548428 NCBI chr20:44,216,568...44,231,820 JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit NOT|involved_in ISO (PMID:18812185) BHF-UCL PMID:18812185 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G MCRS1 microspherule protein 1 involved_in ISO (PMID:15044100) BHF-UCL PMID:15044100 NCBI chr27:5,076,075...5,085,483
Ensembl chr27:5,076,470...5,085,488
JBrowse link
G MEN1 menin 1 involved_in ISO (PMID:12837246) UniProt PMID:12837246 NCBI chr18:52,346,747...52,352,884
Ensembl chr18:52,346,933...52,353,340
JBrowse link
G PIF1 PIF1 5'-to-3' DNA helicase involved_in ISO (PMID:16522649) HGNC-UCL PMID:16522649 NCBI chr30:29,223,507...29,232,584
Ensembl chr30:29,157,119...29,232,043
JBrowse link
G PINX1 PIN2 (TERF1) interacting telomerase inhibitor 1 involved_in ISO (PMID:11701125), (PMID:21119197) BHF-UCL PMID:11701125 PMID:21119197 NCBI chr25:27,090,244...27,182,377
Ensembl chr25:27,021,704...27,181,968
JBrowse link
G PML PML nuclear body scaffold involved_in ISO (PMID:19567472) UniProt PMID:19567472 NCBI chr30:37,232,337...37,278,434
Ensembl chr30:37,232,306...37,277,741
JBrowse link
G POT1 protection of telomeres 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO RGD PMID:16556873 RGD:1580657 NCBI chr20:6,134,618...6,265,481
Ensembl chr20:6,050,357...6,207,981
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr24:25,982,499...26,019,748
Ensembl chr24:25,999,048...26,018,077
JBrowse link
G TEN1 TEN1 subunit of CST complex involved_in IEA GOC GO_REF:0000108 NCBI chr 9:4,635,192...4,658,455
Ensembl chr 9:4,635,354...4,658,252
JBrowse link
G TERF1 telomeric repeat binding factor 1 involved_in ISO (PMID:11971978) BHF-UCL PMID:11971978 NCBI chr29:21,664,378...21,701,491
Ensembl chr29:21,664,186...21,700,495
JBrowse link
G TP53 tumor protein p53 involved_in ISO (PMID:10597287) BHF-UCL PMID:10597287 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
negative regulation of telomerase RNA reverse transcriptase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in ISO (PMID:24528514) BHF-UCL PMID:24528514 NCBI chr20:37,767,336...37,774,269
Ensembl chr20:37,767,505...37,773,770
JBrowse link
negative regulation of telomere capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in ISO (PMID:17694070) BHF-UCL PMID:17694070 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G NBN nibrin involved_in ISO (PMID:17694070) BHF-UCL PMID:17694070 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563
JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in ISO (PMID:17694070) BHF-UCL PMID:17694070 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819
JBrowse link
G SMG6 SMG6 nonsense mediated mRNA decay factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:46,162,991...46,405,856
Ensembl chr 9:46,164,492...46,405,748
JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in ISO (PMID:24270157) BHF-UCL PMID:24270157 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
negative regulation of telomere maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (PMID:17055345) UniProt PMID:17055345 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:17055345) UniProt PMID:17055345 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in ISO (PMID:17055345) UniProt PMID:17055345 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
G TERF2IP TERF2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:75,164,410...75,172,959
Ensembl chr 5:75,165,191...75,172,838
JBrowse link
G TINF2 TERF1 interacting nuclear factor 2 acts_upstream_of_or_within ISO (MGI:2656398|PMID:12676566) MGI PMID:12676566 MGI:2656398 NCBI chr 8:4,221,183...4,223,863
Ensembl chr 8:4,221,269...4,223,512
JBrowse link
negative regulation of telomere maintenance in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr24:47,219,977...47,248,791 JBrowse link
negative regulation of telomere maintenance via recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TERF2 telomeric repeat binding factor 2 involved_in ISO (MGI:5883205|PMID:24120135)
(PMID:15507207)
BHF-UCL PMID:15507207 PMID:24120135 MGI:5883205 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
negative regulation of telomere maintenance via telomerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor involved_in ISO (PMID:15181449)
(PMID:15380063)
BHF-UCL PMID:15181449 PMID:15380063 NCBI chr 5:81,789,915...81,792,725
Ensembl chr 5:81,789,997...81,792,639
JBrowse link
G CTC1 CST telomere replication complex component 1 involved_in ISO (PMID:22763445) BHF-UCL PMID:22763445 NCBI chr 5:33,033,474...33,055,004
Ensembl chr 5:33,033,596...33,055,142
JBrowse link
G DCP2 decapping mRNA 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,256,772...35,298,974
Ensembl chr 4:35,256,970...35,299,021
JBrowse link
G EXOSC10 exosome component 10 involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chr 2:84,942,801...84,964,129
Ensembl chr 2:84,942,777...84,964,130
JBrowse link
G GNL3L G protein nucleolar 3 like involved_in ISO (PMID:18082603) BHF-UCL PMID:18082603 NCBI chr  X:46,270,162...46,296,972
Ensembl chr  X:46,189,870...46,296,966
JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 involved_in ISO (PMID:23935072) BHF-UCL PMID:23935072 NCBI chr27:1,013,459...1,020,083
Ensembl chr27:1,015,868...1,019,891
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:18082603) BHF-UCL PMID:18082603 NCBI chr 7:35,832,956...35,842,898
Ensembl chr 7:35,833,988...35,843,754
JBrowse link
G LOC475399 heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:18082603) BHF-UCL PMID:18082603 NCBI chr15:18,239,810...18,299,065 JBrowse link
G NAT10 N-acetyltransferase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:33,654,701...33,692,642
Ensembl chr18:33,655,311...33,689,923
JBrowse link
G PIF1 PIF1 5'-to-3' DNA helicase involved_in ISO (PMID:23657261) BHF-UCL PMID:23657261 NCBI chr30:29,223,507...29,232,584
Ensembl chr30:29,157,119...29,232,043
JBrowse link
G PINX1 PIN2 (TERF1) interacting telomerase inhibitor 1 involved_in ISO (PMID:21119197)
(PMID:11701125)
BHF-UCL PMID:11701125 PMID:21119197 NCBI chr25:27,090,244...27,182,377
Ensembl chr25:27,021,704...27,181,968
JBrowse link
G PML PML nuclear body scaffold involved_in ISO (PMID:19567472) UniProt PMID:19567472 NCBI chr30:37,232,337...37,278,434
Ensembl chr30:37,232,306...37,277,741
JBrowse link
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr24:25,982,499...26,019,748
Ensembl chr24:25,999,048...26,018,077
JBrowse link
G STN1 STN1 subunit of CST complex involved_in ISO (PMID:22763445) BHF-UCL PMID:22763445 NCBI chr28:16,203,607...16,246,468
Ensembl chr28:16,204,073...16,246,058
JBrowse link
G TEN1 TEN1 subunit of CST complex involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:4,635,192...4,658,455
Ensembl chr 9:4,635,354...4,658,252
JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chr 2:65,068,088...65,147,853
Ensembl chr 2:65,071,111...65,147,896
JBrowse link
G TERF1 telomeric repeat binding factor 1 involved_in ISO (PMID:11971978) BHF-UCL PMID:11971978 NCBI chr29:21,664,378...21,701,491
Ensembl chr29:21,664,186...21,700,495
JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in ISO (PMID:17055345)
(PMID:11971978)
BHF-UCL PMID:11971978 PMID:17055345 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
G TINF2 TERF1 interacting nuclear factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:4,221,183...4,223,863
Ensembl chr 8:4,221,269...4,223,512
JBrowse link
negative regulation of telomere maintenance via telomere lengthening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:18812185) BHF-UCL PMID:18812185 NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
JBrowse link
G MCRS1 microspherule protein 1 involved_in ISO (PMID:15044100) BHF-UCL PMID:15044100 NCBI chr27:5,076,075...5,085,483
Ensembl chr27:5,076,470...5,085,488
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (MGI:5705431|PMID:26586427) BHF-UCL PMID:26586427 MGI:5705431 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit involved_in ISO (PMID:24012755) BHF-UCL PMID:24012755 NCBI chr 6:18,171,190...18,174,577 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:24012755) BHF-UCL PMID:24012755 NCBI chr 6:37,648,297...37,666,584
Ensembl chr 6:37,647,976...37,703,190
JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in ISO (PMID:24012755) BHF-UCL PMID:24012755 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
G TNKS tankyrase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:34,826,248...35,040,004
Ensembl chr16:34,831,662...35,039,946
JBrowse link
G TNKS2 tankyrase 2 involved_in ISO (PMID:25939383) BHF-UCL PMID:25939383 NCBI chr28:6,286,125...6,354,284
Ensembl chr28:6,285,690...6,352,317
JBrowse link
negative regulation of telomeric D-loop disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TERF1 telomeric repeat binding factor 1 involved_in ISO (PMID:15200954) BHF-UCL PMID:15200954 NCBI chr29:21,664,378...21,701,491
Ensembl chr29:21,664,186...21,700,495
JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in ISO (PMID:15200954) BHF-UCL PMID:15200954 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator involved_in ISO (PMID:11350920) BHF-UCL PMID:11350920 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
JBrowse link
G ENDOG endonuclease G ISO RGD PMID:16407272 RGD:9685355 NCBI chr 9:54,809,470...54,812,795
Ensembl chr 9:54,809,530...54,813,042
JBrowse link
G HSF1 heat shock transcription factor 1 ISO RGD PMID:21192280 RGD:10403035 NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252
JBrowse link
G IGFBP3 insulin like growth factor binding protein 3 ISO RGD PMID:15125883 RGD:10402776 NCBI chr16:1,021,855...1,027,604
Ensembl chr16:1,021,972...1,026,392
JBrowse link
G IL6 interleukin 6 involved_in ISO (PMID:28433754) ARUK-UCL PMID:28433754 NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519
JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A involved_in ISO (PMID:25260657) UniProt PMID:25260657 NCBI chr21:24,644,700...24,832,307
Ensembl chr21:24,768,108...24,827,784
JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
positive regulation of deoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
positive regulation of DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARRB2 arrestin beta 2 ISO RGD PMID:19254952 RGD:5509898 NCBI chr 5:31,831,208...31,838,875
Ensembl chr 5:31,829,864...31,839,454
JBrowse link
G C3AR1 complement C3a receptor 1 ISO RGD PMID:23713944 RGD:7411623 NCBI chr27:37,431,745...37,439,858
Ensembl chr27:37,433,792...37,435,246
JBrowse link
G CAMK2D calcium/calmodulin dependent protein kinase II delta ISO RGD PMID:17267544 RGD:2303063 NCBI chr32:33,223,093...33,525,783
Ensembl chr32:33,224,716...33,525,371
JBrowse link
G CRHR2 corticotropin releasing hormone receptor 2 ISO RGD PMID:16005543 RGD:5131269 NCBI chr14:43,366,849...43,414,398
Ensembl chr14:43,368,340...43,415,142
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 ISO RGD PMID:20439821 RGD:7829726 NCBI chr17:30,273,281...30,278,554
Ensembl chr17:30,272,749...30,278,554
JBrowse link
G DDX39B DExD-box helicase 39B ISO RGD PMID:22446327 RGD:10401140 NCBI chr12:1,032,377...1,044,465
Ensembl chr12:1,032,368...1,044,492
JBrowse link
G FGF2 fibroblast growth factor 2 involved_in ISO (PMID:16774925) UniProt PMID:16774925 NCBI chr19:17,403,288...17,463,143
Ensembl chr19:16,994,661...17,463,151
JBrowse link
G FGFR4 fibroblast growth factor receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:36,243,689...36,254,636
Ensembl chr 4:36,244,220...36,252,035
JBrowse link
G GFER growth factor, augmenter of liver regeneration ISO RGD PMID:16937468 RGD:9685728 NCBI chr 6:38,948,927...38,951,300
Ensembl chr 6:38,949,484...38,951,703
JBrowse link
G GSK3B glycogen synthase kinase 3 beta ISO RGD PMID:12721208 RGD:10045365 NCBI chr33:23,458,369...23,659,878
Ensembl chr33:23,463,767...23,659,666
JBrowse link
G HGF hepatocyte growth factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:21,329,688...21,410,257
Ensembl chr18:21,332,817...21,410,263
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G NOX4 NADPH oxidase 4 involved_in ISO (MGI:5009390|PMID:17942966) UniProt PMID:17942966 MGI:5009390 NCBI chr21:10,615,153...10,782,927
Ensembl chr21:10,615,970...10,775,277
JBrowse link
G PAK3 p21 (RAC1) activated kinase 3 ISO RGD PMID:12890786 RGD:7775030 NCBI chr  X:84,074,146...84,335,699
Ensembl chr  X:84,074,001...84,329,951
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in ISS UniProt GO_REF:0000024 NCBI chr10:25,798,877...25,819,422
Ensembl chr10:25,798,938...25,817,746
JBrowse link
G PDGFRB platelet derived growth factor receptor beta involved_in ISO (MGI:5284758|PMID:19019919) UniProt PMID:19019919 MGI:5284758 NCBI chr 4:58,925,922...58,963,639
Ensembl chr 4:58,926,351...58,962,283
JBrowse link
G PRKD2 protein kinase D2 involved_in ISO (MGI:5306299|PMID:17226786) UniProt PMID:17226786 MGI:5306299 NCBI chr 1:109,206,400...109,241,529
Ensembl chr 1:109,207,067...109,330,007
JBrowse link
G PTK2B protein tyrosine kinase 2 beta ISO RGD PMID:21451101 RGD:10041071 NCBI chr25:30,137,546...30,264,221
Ensembl chr25:30,138,209...30,264,133
JBrowse link
G RGCC regulator of cell cycle involved_in ISO PMID:9756947 BHF-UCL PMID:9756947 RGD:633887 NCBI chr22:9,199,204...9,209,297 JBrowse link
G SMOC2 SPARC related modular calcium binding 2 involved_in ISO (PMID:16774925) UniProt PMID:16774925 NCBI chr 1:55,826,354...55,986,053
Ensembl chr 1:55,825,666...55,986,052
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO PMID:16530387 UniProt PMID:16530387 RGD:8553998 NCBI chr24:25,982,499...26,019,748
Ensembl chr24:25,999,048...26,018,077
JBrowse link
G TNF tumor necrosis factor ISO RGD PMID:9395232 RGD:14696805 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425
JBrowse link
G VEGFA vascular endothelial growth factor A involved_in ISO (PMID:16774925) UniProt PMID:16774925 NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965
JBrowse link
positive regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase ISO RGD PMID:27895165 RGD:12879393 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
positive regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUD4 OTU deubiquitinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:43,816,656...43,861,813
Ensembl chr15:43,818,196...43,861,784
JBrowse link
G STPG4 sperm-tail PG-rich repeat containing 4 involved_in ISO (MGI:5762940|PMID:23560077) UniProt PMID:23560077 MGI:5762940 NCBI chr10:49,255,715...49,294,752
Ensembl chr10:49,255,723...49,294,708
JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034
JBrowse link
G USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,277,328...33,315,601
Ensembl chr 6:33,277,444...33,314,491
JBrowse link
G USP9X ubiquitin specific peptidase 9 X-linked involved_in ISO (PMID:25944111) UniProt PMID:25944111 NCBI chr  X:35,522,873...35,676,086 JBrowse link
positive regulation of DNA ligase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 involved_in ISO (PMID:9600082) CACAO PMID:9600082 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
JBrowse link
positive regulation of DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21211721) MGI
Ensembl
PMID:21211721 GO_REF:0000107 NCBI chr10:67,454,500...67,522,659
Ensembl chr10:67,454,356...67,521,761
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 acts_upstream_of_or_within ISO (PMID:21211721) MGI PMID:21211721 NCBI chr20:37,767,336...37,774,269
Ensembl chr20:37,767,505...37,773,770
JBrowse link
G RAD51 RAD51 recombinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
positive regulation of DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA3 annexin A3 ISO RGD PMID:15744063 RGD:2316072 NCBI chr32:3,006,000...3,049,321
Ensembl chr32:3,005,788...3,049,049
JBrowse link
G HMGB2 high mobility group box 2 ISO RGD PMID:8432381 RGD:2316096 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G IGF1R insulin like growth factor 1 receptor ISO RGD PMID:19507001 RGD:2311507 NCBI chr 3:41,795,337...42,096,255
Ensembl chr 3:41,794,623...42,090,387
JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:11481036 RGD:1600909 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G NPM2 nucleophosmin/nucleoplasmin 2 ISO lesser effect than Npm1 RGD PMID:11481036 RGD:1600909 NCBI chr25:35,204,905...35,226,226 JBrowse link
G OGA O-GlcNAcase ISO RGD PMID:19139380 RGD:2305938 NCBI chr28:14,376,824...14,405,409
Ensembl chr28:14,373,452...14,404,541
JBrowse link
G PFN1 profilin 1 ISO RGD PMID:10966486 RGD:2324858 NCBI chr 5:31,670,483...31,671,891
Ensembl chr 5:31,670,194...31,671,895
JBrowse link
positive regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3L DNA methyltransferase 3 like involved_in ISO (MGI:5553039|PMID:24074865) UniProt PMID:24074865 MGI:5553039 NCBI chr31:38,099,100...38,111,432 JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in ISO (PMID:23960241) BHF-UCL PMID:23960241 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:19786833) BHF-UCL PMID:19786833 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G WT1 WT1 transcription factor acts_upstream_of ISO (PMID:23042785) ARUK-UCL PMID:23042785 NCBI chr18:35,099,660...35,148,767
Ensembl chr18:35,103,934...35,148,000
JBrowse link
positive regulation of DNA primase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRIM2 DNA primase subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:24,504,202...24,811,942
Ensembl chr12:24,504,700...24,811,924
JBrowse link
positive regulation of DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,239,626...9,314,972
Ensembl chr 6:9,246,264...9,271,330
JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:7,298,789...7,316,665
Ensembl chr32:7,298,790...7,317,001
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 involved_in ISO PMID:19282473
(MGI:3698695|PMID:17121854)
UniProt PMID:17121854 PMID:19282473 MGI:3698695 RGD:8553580 NCBI chr21:29,719,386...29,741,658
Ensembl chr21:29,719,589...29,759,046
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:45,466,808...45,474,953
Ensembl chr20:45,466,805...45,473,009
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA UniProt GO_REF:0000104 NCBI chr17:21,886,127...22,288,513
Ensembl chr17:21,889,862...22,288,504
JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProt PMID:17525340 PMID:17643121 PMID:19261748 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in ISO (PMID:17525341), (PMID:19261746), (PMID:19261748) UniProt PMID:17525341 PMID:19261746 PMID:19261748 NCBI chr  X:123,081,262...123,143,509
Ensembl chr  X:123,081,050...123,140,133
JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr 9:1,839,701...1,842,355
Ensembl chr 9:1,839,096...1,843,099
JBrowse link
G CEBPG CCAAT enhancer binding protein gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:118,777,110...118,784,397
Ensembl chr 1:118,778,224...118,778,667
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G EGFR epidermal growth factor receptor involved_in ISO (PMID:17115032) UniProt PMID:17115032 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:22483866) UniProt PMID:22483866 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:72,313,412...72,417,729
Ensembl chr 2:72,328,362...72,414,058
JBrowse link
G FGF10 fibroblast growth factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chr28:38,204,611...38,427,482
Ensembl chr28:38,204,610...38,427,380
JBrowse link
G NPAS2 neuronal PAS domain protein 2 involved_in ISO (PMID:18819933) UniProt PMID:18819933 NCBI chr10:41,846,766...42,005,058
Ensembl chr10:41,847,625...42,005,469
JBrowse link
G PARG poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chr28:1,651,698...1,767,210
Ensembl chr28:1,652,670...1,766,895
JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
G RNF168 ring finger protein 168 involved_in ISO (PMID:19203578), (PMID:19203579)
(PMID:23760478)
UniProt PMID:19203578 PMID:19203579 PMID:23760478 NCBI chr33:29,542,209...29,575,127
Ensembl chr33:29,539,182...29,628,248
JBrowse link
G RNF8 ring finger protein 8 involved_in IEA UniProt GO_REF:0000104 NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G RPS3 ribosomal protein S3 involved_in ISO (PMID:23911537) UniProt PMID:23911537 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:19934257) UniProt PMID:19934257 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:24790221) UniProt PMID:24790221 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in ISO (PMID:25928429) UniProt PMID:25928429 NCBI chr27:40,521,751...40,549,304
Ensembl chr27:40,523,314...40,549,332
JBrowse link
G TMEM161A transmembrane protein 161A involved_in ISO (PMID:16551573) BHF-UCL PMID:16551573 NCBI chr20:44,021,722...44,037,985
Ensembl chr20:44,020,919...44,037,938
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in ISO (PMID:17178852) UniProt PMID:17178852 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) HGNC-UCL PMID:16129784 NCBI chr10:41,470,073...41,470,738
Ensembl chr10:41,470,073...41,470,738
JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr29:307,502...359,058
Ensembl chr29:307,525...357,962
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:36,339,711...36,467,035
Ensembl chr 4:36,354,922...36,466,880
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of DNA strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
positive regulation of DNA-dependent DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 acts_upstream_of_or_within ISO (MGI:4439421|PMID:20215406) MGI PMID:20215406 MGI:4439421 NCBI chr10:300,863...306,546
Ensembl chr10:300,903...305,438
JBrowse link
G CIZ1 CDKN1A interacting zinc finger protein 1 acts_upstream_of_or_within ISO (MGI:3513706|PMID:15585571)
(MGI:4439421|PMID:20215406)
MGI PMID:15585571 PMID:20215406 MGI:3513706 MGI:4439421 NCBI chr 9:55,303,189...55,322,429
Ensembl chr 9:55,303,129...55,318,945
JBrowse link
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHTF18 chromosome transmission fidelity factor 18 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chr 6:39,806,924...39,815,145
Ensembl chr 6:39,806,673...39,815,333
JBrowse link
G CHTF8 chromosome transmission fidelity factor 8 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chr 5:80,510,617...80,521,356
Ensembl chr 5:80,509,002...80,520,233
JBrowse link
G DSCC1 DNA replication and sister chromatid cohesion 1 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chr13:18,825,522...18,841,905
Ensembl chr13:18,825,844...18,841,873
JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:8123045 RGD:11535022 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
G POLG2 DNA polymerase gamma 2, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:12,258,188...12,298,376
Ensembl chr 9:12,269,990...12,298,272
JBrowse link
G RFC2 replication factor C subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:6,119,203...6,159,293
Ensembl chr 6:6,119,164...6,160,886
JBrowse link
G RFC3 replication factor C subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:6,469,865...6,486,935
Ensembl chr25:6,469,867...6,486,849
JBrowse link
G RFC4 replication factor C subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:19,361,024...19,377,289
Ensembl chr34:19,361,044...19,377,294
JBrowse link
G RFC5 replication factor C subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:14,428,661...14,439,641
Ensembl chr26:14,428,695...14,438,986
JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:23797032) UniProt PMID:23797032 NCBI chr27:42,067,845...42,102,699
Ensembl chr27:42,067,898...42,105,870
JBrowse link
G FMN2 formin 2 involved_in ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr 7:31,657,371...32,024,777
Ensembl chr 7:31,697,245...32,023,472
JBrowse link
G FOXM1 forkhead box M1 involved_in ISO (PMID:17101782)
(MGI:3698692|PMID:17101782)
UniProt PMID:17101782 MGI:3698692 NCBI chr27:41,894,605...41,905,656
Ensembl chr27:41,894,672...41,905,663
JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in ISO (MGI:6467697|PMID:29125140), (MGI:6716977|PMID:33115731) UniProt PMID:29125140 PMID:33115731 MGI:6467697 MGI:6716977 NCBI chr12:35,434,123...35,435,679
Ensembl chr12:35,434,123...35,468,943
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase involved_in ISO (PMID:24147153) BHF-UCL PMID:24147153 NCBI chr28:38,204,611...38,427,482
Ensembl chr28:38,204,610...38,427,380
JBrowse link
G OOEP oocyte expressed protein involved_in ISS UniProt GO_REF:0000024 NCBI chr12:35,431,562...35,449,540
Ensembl chr12:35,448,015...35,449,511
JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:14,792,851...14,877,024
Ensembl chr 3:14,793,363...14,869,755
JBrowse link
G SLF2 SMC5-SMC6 complex localization factor 2 involved_in ISO (PMID:25931565) UniProt PMID:25931565 NCBI chr28:13,595,194...13,656,644
Ensembl chr28:13,595,831...13,651,638
JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in ISO (PMID:23509288) UniProt PMID:23509288 NCBI chr35:79,188...503,687
Ensembl chr35:79,185...514,797
JBrowse link
G SPIRE1 spire type actin nucleation factor 1 involved_in ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr 7:77,860,287...78,062,894
Ensembl chr 7:77,854,875...78,092,466
JBrowse link
G SPIRE2 spire type actin nucleation factor 2 involved_in ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr 5:63,732,855...63,765,162
Ensembl chr 5:63,732,842...63,753,419
JBrowse link
G TIMELESS timeless circadian regulator involved_in ISO (PMID:23797032) UniProt PMID:23797032 NCBI chr10:671,829...701,152
Ensembl chr10:671,269...687,016
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:27715493) UniProt PMID:27715493 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,239,626...9,314,972
Ensembl chr 6:9,246,264...9,271,330
JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr10:64,696,068...64,733,027
Ensembl chr10:64,696,111...64,730,553
JBrowse link
G ARID2 AT-rich interaction domain 2 involved_in ISO (PMID:28381560) CACAO PMID:28381560 NCBI chr27:8,411,092...8,579,735
Ensembl chr27:8,412,377...8,579,882
JBrowse link
G BLM BLM RecQ like helicase acts_upstream_of_or_within ISO (MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:5648586 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G FANCB FA complementation group B acts_upstream_of_or_within ISO (MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:5648586 NCBI chr  X:10,690,826...11,140,838
Ensembl chr  X:11,095,200...11,141,029
JBrowse link
G FUS FUS RNA binding protein involved_in ISO (PMID:10567410) UniProt PMID:10567410 NCBI chr 6:17,059,904...17,071,227
Ensembl chr 6:17,060,061...17,071,178
JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in ISO (PMID:31609975)
(MGI:6716962|PMID:25936915)
UniProt PMID:25936915 PMID:31609975 MGI:6716962 NCBI chr12:35,434,123...35,435,679
Ensembl chr12:35,434,123...35,468,943
JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:10,749,327...10,783,846
Ensembl chr28:10,749,325...10,783,805
JBrowse link
G MRNIP MRN complex interacting protein involved_in ISO (PMID:27568553) UniProt PMID:27568553 NCBI chr11:1,834,148...1,859,601
Ensembl chr11:1,833,967...1,859,347
JBrowse link
G OOEP oocyte expressed protein involved_in ISS UniProt GO_REF:0000024 NCBI chr12:35,431,562...35,449,540
Ensembl chr12:35,448,015...35,449,511
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098 PMID:30356214 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in ISO (PMID:17996710), (PMID:17996711) UniProt PMID:17996710 PMID:17996711 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G TIMELESS timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:671,829...701,152
Ensembl chr10:671,269...687,016
JBrowse link
G WAS WASP actin nucleation promoting factor involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr  X:41,882,240...41,890,053
Ensembl chr  X:41,882,875...41,890,058
JBrowse link
G WDR48 WD repeat domain 48 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:8,716,598...8,766,242
Ensembl chr23:8,715,700...8,764,678
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:25,676,686...25,684,270
Ensembl chr33:25,677,076...25,684,175
JBrowse link
G FH fumarate hydratase involved_in ISO (PMID:26237645) UniProt PMID:26237645 NCBI chr 7:32,900,250...32,927,436
Ensembl chr 7:32,901,586...32,927,412
JBrowse link
G KMT5B lysine methyltransferase 5B involved_in ISO (PMID:28114273) UniProt PMID:28114273 NCBI chr18:49,655,783...49,691,899
Ensembl chr18:49,637,610...49,827,034
JBrowse link
G KMT5C lysine methyltransferase 5C involved_in ISO (PMID:28114273) UniProt PMID:28114273 NCBI chr 1:102,334,687...102,342,090
Ensembl chr 1:102,333,543...102,342,118
JBrowse link
G LOC485121 lysine-specific demethylase 4D acts_upstream_of_or_within ISO (PMID:24550317) MGI PMID:24550317 NCBI chr21:6,002,292...6,037,344
Ensembl chr21:5,987,723...6,004,783
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in ISO (PMID:24598253) UniProt PMID:24598253 NCBI chr20:37,767,336...37,774,269
Ensembl chr20:37,767,505...37,773,770
JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 involved_in ISO (PMID:28525742) UniProt PMID:28525742 NCBI chr33:25,643,439...25,676,979
Ensembl chr33:25,643,883...25,677,462
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:12032095) CACAO PMID:12032095 NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in ISS UniProt GO_REF:0000024 NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in ISO (PMID:28241136)
(MGI:5468037|PMID:23306437), (MGI:5476381|PMID:23333305)
UniProt
CACAO
PMID:23306437 PMID:23333305 PMID:28241136 MGI:5468037 MGI:5476381 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G SETMAR SET domain without mariner transposase fusion involved_in ISO (PMID:20620605), (PMID:21491884) UniProt PMID:20620605 PMID:21491884 NCBI chr20:13,214,241...13,224,020
Ensembl chr20:13,214,241...13,224,020
JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in ISO (PMID:29656893), (PMID:29789392) UniProt PMID:29656893 PMID:29789392 NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
JBrowse link
G SHLD3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:25294876) UniProt PMID:25294876 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TOP2B DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chr23:18,159,521...18,206,413
Ensembl chr23:18,146,095...18,206,287
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of endodeoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in ISO (PMID:20605787) UniProt PMID:20605787 NCBI chr 8:72,317,399...72,335,686
Ensembl chr 8:72,317,869...72,335,193
JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:18499658) UniProt PMID:18499658 NCBI chr27:42,067,845...42,102,699
Ensembl chr27:42,067,898...42,105,870
JBrowse link
G PRKCD protein kinase C delta involved_in ISO (PMID:19059439) UniProt PMID:19059439 NCBI chr20:36,723,491...36,751,982
Ensembl chr20:36,723,809...36,752,191
JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
positive regulation of interleukin-4-dependent isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TNFSF4 TNF superfamily member 4 involved_in ISO (MGI:3763508|PMID:12496423) BHF-UCL PMID:12496423 MGI:3763508 NCBI chr 7:25,883,297...25,909,608
Ensembl chr 7:25,883,251...25,906,892
JBrowse link
positive regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC3 exosome component 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5009766|PMID:21255825) Ensembl
MGI
PMID:21255825 GO_REF:0000107 MGI:5009766 NCBI chr11:54,072,993...54,079,024
Ensembl chr11:54,073,313...54,078,598
JBrowse link
G EXOSC6 exosome component 6 acts_upstream_of_or_within ISO (MGI:5009766|PMID:21255825) MGI PMID:21255825 MGI:5009766 NCBI chr 5:76,286,286...76,287,667
Ensembl chr 5:76,286,789...76,287,976
JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:2,808,687...2,831,123
Ensembl chr20:2,808,689...2,830,462
JBrowse link
G KMT5B lysine methyltransferase 5B involved_in ISO (MGI:6370097|PMID:28114273) UniProt PMID:28114273 MGI:6370097 NCBI chr18:49,655,783...49,691,899
Ensembl chr18:49,637,610...49,827,034
JBrowse link
G KMT5C lysine methyltransferase 5C involved_in ISO (MGI:6370097|PMID:28114273) UniProt PMID:28114273 MGI:6370097 NCBI chr 1:102,334,687...102,342,090
Ensembl chr 1:102,333,543...102,342,118
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
JBrowse link
G PAXIP1 PAX interacting protein 1 involved_in ISO (MGI:4821506|PMID:20671152) UniProt PMID:20671152 MGI:4821506 NCBI chr16:18,066,289...18,116,007
Ensembl chr16:18,066,246...18,112,506
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in ISO (MGI:5468036|PMID:23306439), (MGI:5476381|PMID:23333305), (MGI:5490831|PMID:23333306) UniProt PMID:23306439 PMID:23333305 PMID:23333306 MGI:5468036 MGI:5476381 MGI:5490831 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
JBrowse link
G SHLD3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893
G TFRC transferrin receptor involved_in ISS UniProt GO_REF:0000024 NCBI chr33:29,206,024...29,237,221
Ensembl chr33:29,208,609...29,238,242
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
JBrowse link
positive regulation of isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 acts_upstream_of_or_within ISO (PMID:14988498) MGI PMID:14988498 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G MLH1 mutL homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G MSH2 mutS homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210
JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 acts_upstream_of_or_within ISO (MGI:5462481|PMID:23241889) MGI PMID:23241889 MGI:5462481 NCBI chr 3:62,164,888...62,228,006
Ensembl chr 3:62,167,939...62,228,035
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component involved_in ISO (MGI:1342394|PMID:10430621) CAFA PMID:10430621 MGI:1342394 NCBI chr 6:11,411,062...11,438,767
Ensembl chr 6:11,349,453...11,438,940
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G TNFSF13 TNF superfamily member 13 acts_upstream_of_or_within ISO (MGI:3037416|PMID:14988498)
(PMID:14988498)
MGI PMID:14988498 MGI:3037416 NCBI chr 5:32,482,723...32,484,790
Ensembl chr 5:32,482,723...32,484,789
JBrowse link
positive regulation of isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLCF1 cardiotrophin like cytokine factor 1 involved_in ISO (MGI:3777853|PMID:12023368) BHF-UCL PMID:12023368 MGI:3777853 NCBI chr18:50,084,120...50,093,825
Ensembl chr18:50,083,915...50,102,651
JBrowse link
G IL4 interleukin 4 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
(PMID:21873635)
(MGI:3037416|PMID:14988498)
GO_Central
MGI
UniProt
PMID:14988498 PMID:21873635 GO_REF:0000024 MGI:3037416 NCBI chr11:20,972,693...20,981,539
Ensembl chr11:20,972,690...20,981,534
JBrowse link
G STAT6 signal transducer and activator of transcription 6 acts_upstream_of_or_within ISO (MGI:1345885|PMID:10490661) MGI PMID:10490661 MGI:1345885 NCBI chr10:1,232,515...1,247,011
Ensembl chr10:1,233,691...1,247,075
JBrowse link
positive regulation of isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATAD5 ATPase family AAA domain containing 5 acts_upstream_of_or_within ISO (MGI:5763555|PMID:25404367) MGI PMID:25404367 MGI:5763555 NCBI chr 9:40,869,778...40,917,976
Ensembl chr 9:40,870,924...40,915,629
JBrowse link
G CD28 CD28 molecule acts_upstream_of_or_within ISO (MGI:62368|PMID:7688139) MGI PMID:7688139 MGI:62368 NCBI chr37:12,503,849...12,536,362
Ensembl chr37:12,503,811...12,532,854
JBrowse link
G CD40 CD40 molecule acts_upstream_of_or_within ISO (MGI:2670820|PMID:12882831) MGI PMID:12882831 MGI:2670820 NCBI chr24:33,352,992...33,383,488
Ensembl chr24:33,372,930...33,383,301
JBrowse link
G IFNG interferon gamma acts_upstream_of_or_within ISO (MGI:2670820|PMID:12882831) MGI PMID:12882831 MGI:2670820 NCBI chr10:10,406,866...10,411,698
Ensembl chr10:10,406,867...10,411,698
JBrowse link
G IL2 interleukin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:87443|PMID:1830926) Ensembl
MGI
PMID:1830926 GO_REF:0000107 MGI:87443 NCBI chr19:17,750,780...17,756,394
Ensembl chr19:17,750,780...17,756,394
JBrowse link
G IL4 interleukin 4 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
(MGI:2670820|PMID:12882831), (MGI:3037416|PMID:14988498)
(PMID:21873635)
UniProt
MGI
GO_Central
PMID:12882831 PMID:14988498 PMID:21873635 GO_REF:0000024 MGI:2670820 MGI:3037416 NCBI chr11:20,972,693...20,981,539
Ensembl chr11:20,972,690...20,981,534
JBrowse link
G MLH1 mutL homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
JBrowse link
G MSH2 mutS homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:49,517,448...49,594,001
Ensembl chr10:49,517,369...49,594,210
JBrowse link
G PAGR1 PAXIP1 associated glutamate rich protein 1 involved_in ISO (MGI:5752090|PMID:26744420) UniProt PMID:26744420 MGI:5752090 NCBI chr 6:17,876,740...17,879,546 JBrowse link
G PAXIP1 PAX interacting protein 1 involved_in ISO (MGI:5752090|PMID:26744420) UniProt PMID:26744420 MGI:5752090 NCBI chr16:18,066,289...18,116,007
Ensembl chr16:18,066,246...18,112,506
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component involved_in ISO (MGI:1342394|PMID:10430621) CAFA PMID:10430621 MGI:1342394 NCBI chr 6:11,411,062...11,438,767
Ensembl chr 6:11,349,453...11,438,940
JBrowse link
G PTPRC protein tyrosine phosphatase receptor type C acts_upstream_of_or_within ISO (MGI:85031|PMID:9015183) MGI PMID:9015183 MGI:85031 NCBI chr 7:4,155,876...4,282,151
Ensembl chr 7:4,137,728...4,282,124
JBrowse link
G TBX21 T-box transcription factor 21 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2670820|PMID:12882831) Ensembl
MGI
PMID:12882831 GO_REF:0000107 MGI:2670820 NCBI chr 9:24,077,752...24,086,560
Ensembl chr 9:24,077,761...24,086,261
JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 involved_in ISO (PMID:26221039) UniProt PMID:26221039 NCBI chr10:16,996,307...17,001,365
Ensembl chr10:16,995,762...17,078,262
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:15014079) UniProt PMID:15014079 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G PRKCG protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:103,295,110...103,312,562 JBrowse link
positive regulation of mitochondrial DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPARGC1A PPARG coactivator 1 alpha involved_in ISO (MGI:5463828|PMID:23150719) UniProt PMID:23150719 MGI:5463828 NCBI chr 3:85,645,942...86,284,570
Ensembl chr 3:86,016,140...86,281,269
JBrowse link
positive regulation of reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD51AP1 RAD51 associated protein 1 involved_in ISO (PMID:17996711) UniProt PMID:17996711 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B acts_upstream_of_or_within ISO (MGI:2450033|PMID:12556476) MGI PMID:12556476 MGI:2450033 NCBI chr11:22,523,671...22,541,473
Ensembl chr11:22,525,051...22,540,388
JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:28002403)
(MGI:5902647|PMID:28002403)
UniProt PMID:28002403 MGI:5902647 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
JBrowse link
positive regulation of strand invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WRN WRN RecQ like helicase involved_in ISO (PMID:26420422) BHF-UCL PMID:26420422 NCBI chr16:33,164,662...33,304,466
Ensembl chr16:33,167,364...33,304,625
JBrowse link
positive regulation of t-circle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:18,171,190...18,174,577 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr 6:37,648,297...37,666,584
Ensembl chr 6:37,647,976...37,703,190
JBrowse link
positive regulation of telomerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor involved_in ISO (PMID:17237768) BHF-UCL PMID:17237768 NCBI chr 5:81,789,915...81,792,725
Ensembl chr 5:81,789,997...81,792,639
JBrowse link
G AURKB aurora kinase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:33,014,098...33,028,951
Ensembl chr 5:33,014,102...33,033,948
JBrowse link
G CCT2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr10:11,560,287...11,586,559
Ensembl chr10:11,560,396...11,578,433
JBrowse link
G CCT4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:61,859,148...61,874,030
Ensembl chr10:61,859,245...61,874,389
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of ISO (MGI:5428344|PMID:22723415) BHF-UCL PMID:22723415 MGI:5428344 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3047190|PMID:15240872) Ensembl
MGI
PMID:15240872 GO_REF:0000107 MGI:3047190 NCBI chr  X:122,838,787...122,850,870
Ensembl chr  X:122,838,645...122,850,884
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:2,219,535...2,231,868
Ensembl chr30:2,222,898...2,225,418
JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in ISO (PMID:19015635), (PMID:20938050) UniProt PMID:19015635 PMID:20938050 NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096
JBrowse link
G HMBOX1 homeobox containing 1 involved_in ISO (PMID:23685356) BHF-UCL PMID:23685356 NCBI chr25:28,489,472...28,679,322
Ensembl chr25:28,489,506...28,679,748
JBrowse link
G HSP90AA1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:10197982) BHF-UCL PMID:10197982 NCBI chr 8:70,091,203...70,096,107
Ensembl chr 8:70,092,217...70,095,243
JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:12,658,415...12,664,945
Ensembl chr12:12,660,008...12,664,940
JBrowse link
G KLF4 Kruppel like factor 4 involved_in ISO (PMID:20629177) BHF-UCL PMID:20629177 NCBI chr11:62,881,840...62,886,676
Ensembl chr11:62,882,767...62,928,251
JBrowse link
G MAP2K7 mitogen-activated protein kinase kinase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,594,450...52,604,236
Ensembl chr20:52,594,536...52,602,150
JBrowse link
G MAP3K4 mitogen-activated protein kinase kinase kinase 4 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:49,590,615...49,702,289
Ensembl chr 1:49,548,274...49,702,289
JBrowse link
G MAPK1 mitogen-activated protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:31,013,607...31,132,998
Ensembl chr26:31,013,607...31,132,998
JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr13:37,317,061...37,322,792
Ensembl chr13:37,316,424...37,322,792
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 6:18,109,184...18,115,728
Ensembl chr 6:18,109,222...18,114,425
JBrowse link
G MAPKAPK5 MAPK activated protein kinase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:9,380,551...9,420,564
Ensembl chr26:9,319,180...9,419,236
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISO (MGI:5810267|PMID:9637678) BHF-UCL PMID:9637678 MGI:5810267 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G NAF1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:27510903) BHF-UCL PMID:27510903 NCBI chr15:59,430,809...59,470,306 JBrowse link
G NEK2 NIMA related kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:10,039,617...10,052,511
Ensembl chr 7:10,040,187...10,052,512
JBrowse link
G NEK7 NIMA related kinase 7 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 7:4,557,754...4,755,912
Ensembl chr 7:4,555,231...4,704,955
JBrowse link
G NVL nuclear VCP like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:40,041,692...40,131,984
Ensembl chr 7:40,041,394...40,131,823
JBrowse link
G PARN poly(A)-specific ribonuclease involved_in ISO (PMID:26482878) BHF-UCL PMID:26482878 NCBI chr 6:28,629,137...28,783,671
Ensembl chr 6:28,629,174...28,783,901
JBrowse link
G PKIB cAMP-dependent protein kinase inhibitor beta involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:61,960,466...62,049,553
Ensembl chr 1:61,967,129...62,088,547
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
JBrowse link
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G PRKCQ protein kinase C theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:29,319,123...29,505,338
Ensembl chr 2:29,318,870...29,505,337
JBrowse link
G PTGES3 prostaglandin E synthase 3 involved_in ISO (PMID:19740745)
(MGI:5819359|PMID:10197982)
(PMID:10197982), (PMID:19740745)
BHF-UCL PMID:10197982 PMID:19740745 MGI:5819359 NCBI chr10:885,744...903,814
Ensembl chr10:870,392...909,161
JBrowse link
G TCP1 t-complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,029,260...49,038,023
Ensembl chr 1:49,029,282...49,038,020
JBrowse link
G TNKS tankyrase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:34,826,248...35,040,004
Ensembl chr16:34,831,662...35,039,946
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:23685356), (PMID:25467444)
(MGI:6189679|PMID:29804836)
(PMID:19179534), (PMID:23685356), (PMID:29804836)
BHF-UCL
UniProt
PMID:19179534 PMID:23685356 PMID:25467444 PMID:29804836 MGI:6189679 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of telomerase RNA reverse transcriptase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr14:39,498,805...39,509,034
Ensembl chr14:39,500,897...39,508,952
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:6,323,444...6,341,238
Ensembl chr32:6,323,469...6,341,166
JBrowse link
positive regulation of telomere capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AURKB aurora kinase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:33,014,098...33,028,951
Ensembl chr 5:33,014,102...33,033,948
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:6,323,444...6,341,238
Ensembl chr32:6,323,469...6,341,166
JBrowse link
G MAP2K7 mitogen-activated protein kinase kinase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,594,450...52,604,236
Ensembl chr20:52,594,536...52,602,150
JBrowse link
G MAP3K4 mitogen-activated protein kinase kinase kinase 4 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:49,590,615...49,702,289
Ensembl chr 1:49,548,274...49,702,289
JBrowse link
G MAPK1 mitogen-activated protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:31,013,607...31,132,998
Ensembl chr26:31,013,607...31,132,998
JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr13:37,317,061...37,322,792
Ensembl chr13:37,316,424...37,322,792
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 6:18,109,184...18,115,728
Ensembl chr 6:18,109,222...18,114,425
JBrowse link
G MAPKAPK5 MAPK activated protein kinase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:9,380,551...9,420,564
Ensembl chr26:9,319,180...9,419,236
JBrowse link
G NABP2 nucleic acid binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:546,964...551,360
Ensembl chr10:546,964...551,107
JBrowse link
G NEK2 NIMA related kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:10,039,617...10,052,511
Ensembl chr 7:10,040,187...10,052,512
JBrowse link
G NEK7 NIMA related kinase 7 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 7:4,557,754...4,755,912
Ensembl chr 7:4,555,231...4,704,955
JBrowse link
G PKIB cAMP-dependent protein kinase inhibitor beta involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:61,960,466...62,049,553
Ensembl chr 1:61,967,129...62,088,547
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
JBrowse link
G PRKCQ protein kinase C theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:29,319,123...29,505,338
Ensembl chr 2:29,318,870...29,505,337
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (PMID:23959892) BHF-UCL PMID:23959892 NCBI chr24:47,219,977...47,248,791 JBrowse link
G TNKS tankyrase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:34,826,248...35,040,004
Ensembl chr16:34,831,662...35,039,946
JBrowse link
G TNKS2 tankyrase 2 involved_in ISO (PMID:21531765)
(PMID:25939383)
BHF-UCL PMID:21531765 PMID:25939383 NCBI chr28:6,286,125...6,354,284
Ensembl chr28:6,285,690...6,352,317
JBrowse link
positive regulation of telomere maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler involved_in ISO (MGI:4454526|PMID:20110566) UniProt PMID:20110566 MGI:4454526 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:22238380) UniProt PMID:22238380 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G GNL3 G protein nucleolar 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:37,103,298...37,110,350
Ensembl chr20:37,103,320...37,110,207
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119
JBrowse link
G NBN nibrin involved_in ISO (PMID:16374507) BHF-UCL PMID:16374507 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563
JBrowse link
G PML PML nuclear body scaffold involved_in ISO (PMID:22641345), (PMID:26119943) BHF-UCL PMID:22641345 PMID:26119943 NCBI chr30:37,232,337...37,278,434
Ensembl chr30:37,232,306...37,277,741
JBrowse link
G PPP1R10 protein phosphatase 1 regulatory subunit 10 involved_in ISO (PMID:23426265) BHF-UCL PMID:23426265 NCBI chr12:416,533...434,777
Ensembl chr12:417,680...427,799
JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in ISO (PMID:16374507) BHF-UCL PMID:16374507 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr24:47,219,977...47,248,791 JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:23201774), (PMID:25819580) BHF-UCL PMID:23201774 PMID:25819580 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944
JBrowse link
G TERF2 telomeric repeat binding factor 2 acts_upstream_of_or_within ISO (MGI:3615734|PMID:15968270) MGI PMID:15968270 MGI:3615734 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
positive regulation of telomere maintenance via telomerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor involved_in ISO (PMID:17237768) BHF-UCL PMID:17237768 NCBI chr 5:81,789,915...81,792,725
Ensembl chr 5:81,789,997...81,792,639
JBrowse link
G ATM ATM serine/threonine kinase involved_in ISO (MGI:5705431|PMID:26586427) BHF-UCL PMID:26586427 MGI:5705431 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G ATR ATR serine/threonine kinase involved_in ISO (MGI:5705431|PMID:26586427) BHF-UCL PMID:26586427 MGI:5705431 NCBI chr23:38,131,956...38,223,888
Ensembl chr23:38,132,788...38,224,016
JBrowse link
G AURKB aurora kinase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:33,014,098...33,028,951
Ensembl chr 5:33,014,102...33,033,948
JBrowse link
G CCT2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr10:11,560,287...11,586,559
Ensembl chr10:11,560,396...11,578,433
JBrowse link
G CCT3 chaperonin containing TCP1 subunit 3 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 7:41,566,274...41,583,903
Ensembl chr 7:41,566,292...41,584,863
JBrowse link
G CCT4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:61,859,148...61,874,030
Ensembl chr10:61,859,245...61,874,389
JBrowse link
G CCT5 chaperonin containing TCP1 subunit 5 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr34:4,035,851...4,049,131
Ensembl chr34:4,035,857...4,049,244
JBrowse link
G CCT6A chaperonin containing TCP1 subunit 6A involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 6:546,278...556,996
Ensembl chr 6:546,307...557,001
JBrowse link
G CCT8 chaperonin containing TCP1 subunit 8 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr31:24,061,185...24,075,002
Ensembl chr31:24,061,252...24,075,364
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of ISO (MGI:5428344|PMID:22723415) BHF-UCL PMID:22723415 MGI:5428344 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3047190|PMID:15240872) Ensembl
MGI
PMID:15240872 GO_REF:0000107 MGI:3047190 NCBI chr  X:122,838,787...122,850,870
Ensembl chr  X:122,838,645...122,850,884
JBrowse link
G FBXO4 F-box protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:67,620,947...67,664,862
Ensembl chr 4:67,651,275...67,664,915
JBrowse link
G HMBOX1 homeobox containing 1 involved_in ISO (PMID:23685356) BHF-UCL PMID:23685356 NCBI chr25:28,489,472...28,679,322
Ensembl chr25:28,489,506...28,679,748
JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 involved_in ISO (PMID:23935072) BHF-UCL PMID:23935072 NCBI chr27:1,013,459...1,020,083
Ensembl chr27:1,015,868...1,019,891
JBrowse link
G LOC100856782 T-complex protein 1 subunit eta involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr34:37,026,053...37,027,839 JBrowse link
G MAP2K7 mitogen-activated protein kinase kinase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,594,450...52,604,236
Ensembl chr20:52,594,536...52,602,150
JBrowse link
G MAP3K4 mitogen-activated protein kinase kinase kinase 4 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:49,590,615...49,702,289
Ensembl chr 1:49,548,274...49,702,289
JBrowse link
G MAPK1 mitogen-activated protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:31,013,607...31,132,998
Ensembl chr26:31,013,607...31,132,998
JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr13:37,317,061...37,322,792
Ensembl chr13:37,316,424...37,322,792
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 6:18,109,184...18,115,728
Ensembl chr 6:18,109,222...18,114,425
JBrowse link
G MAPKAPK5 MAPK activated protein kinase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:9,380,551...9,420,564
Ensembl chr26:9,319,180...9,419,236
JBrowse link
G NEK2 NIMA related kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:10,039,617...10,052,511
Ensembl chr 7:10,040,187...10,052,512
JBrowse link
G NEK7 NIMA related kinase 7 involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 7:4,557,754...4,755,912
Ensembl chr 7:4,555,231...4,704,955
JBrowse link
G PARN poly(A)-specific ribonuclease involved_in ISO (PMID:26482878), (PMID:26950371) BHF-UCL PMID:26482878 PMID:26950371 NCBI chr 6:28,629,137...28,783,671
Ensembl chr 6:28,629,174...28,783,901
JBrowse link
G PKIB cAMP-dependent protein kinase inhibitor beta involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:61,960,466...62,049,553
Ensembl chr 1:61,967,129...62,088,547
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:21531765) BHF-UCL PMID:21531765 NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
JBrowse link
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G PRKCQ protein kinase C theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:29,319,123...29,505,338
Ensembl chr 2:29,318,870...29,505,337
JBrowse link
G TCP1 t-complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,029,260...49,038,023
Ensembl chr 1:49,029,282...49,038,020
JBrowse link
G TNKS tankyrase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:34,826,248...35,040,004
Ensembl chr16:34,831,662...35,039,946
JBrowse link
G XRCC5 X-ray repair cross complementing 5 involved_in ISO (PMID:19188702) BHF-UCL PMID:19188702 NCBI chr37:23,095,769...23,185,680
Ensembl chr37:23,095,754...23,185,586
JBrowse link
positive regulation of telomere maintenance via telomere lengthening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in ISO (PMID:17694070), (PMID:26586427) BHF-UCL PMID:17694070 PMID:26586427 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:21149580) UniProt PMID:21149580 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr14:39,498,805...39,509,034
Ensembl chr14:39,500,897...39,508,952
JBrowse link
G NAF1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:27510903) BHF-UCL PMID:27510903 NCBI chr15:59,430,809...59,470,306 JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (PMID:23959892) BHF-UCL PMID:23959892 NCBI chr24:47,219,977...47,248,791 JBrowse link
positive regulation of telomeric loop disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5645200|PMID:22579284) BHF-UCL PMID:22579284 MGI:5645200 NCBI chr24:47,219,977...47,248,791 JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207) UniProt PMID:17143267 PMID:21407207 PMID:22722204 MGI:5432962 MGI:5447615 MGI:5465527 NCBI chr27:37,114,192...37,196,434 JBrowse link
regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIFM1 apoptosis inducing factor mitochondria associated 1 acts_upstream_of_or_within ISO (MGI:3577148|PMID:15703386) MGI PMID:15703386 MGI:3577148 NCBI chr  X:101,275,027...101,307,551
Ensembl chr  X:101,275,017...101,307,367
JBrowse link
G APAF1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO (MGI:3577148|PMID:15703386) MGI PMID:15703386 MGI:3577148 NCBI chr15:38,026,893...38,160,842
Ensembl chr15:38,028,132...38,114,987
JBrowse link
G CIDEA cell death inducing DFFA like effector a involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:77,685,383...77,703,320
Ensembl chr 7:77,684,863...77,702,934
JBrowse link
regulation of DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1A cyclin dependent kinase inhibitor 1A acts_upstream_of_or_within ISO (MGI:3617096|PMID:11981756) MGI PMID:11981756 MGI:3617096 NCBI chr12:5,746,898...5,755,103
Ensembl chr12:5,745,852...5,892,281
JBrowse link
G PDGFA platelet derived growth factor subunit A NOT|involved_in ISO (PMID:11788434), (PMID:19019919) UniProt PMID:11788434 PMID:19019919 NCBI chr 6:16,271,082...16,293,246
Ensembl chr 6:16,270,104...16,292,396
JBrowse link
G SH2B1 SH2B adaptor protein 1 involved_in ISO (MGI:5009204|PMID:10644978) UniProt PMID:10644978 MGI:5009204 NCBI chr 6:18,370,881...18,380,965
Ensembl chr 6:18,371,832...18,380,962
JBrowse link
G TFDP1 transcription factor Dp-1 acts_upstream_of_or_within ISO (MGI:3525422|PMID:15448153) MGI PMID:15448153 MGI:3525422 NCBI chr22:60,863,541...60,897,491
Ensembl chr22:60,870,413...60,896,629
JBrowse link
G TOM1L1 target of myb1 like 1 membrane trafficking protein NOT|involved_in ISO (PMID:16479011) UniProt PMID:16479011 NCBI chr 9:30,024,203...30,073,032
Ensembl chr 9:30,025,132...30,072,988
JBrowse link
regulation of DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HELB DNA helicase B involved_in ISO (PMID:26774285)
(MGI:5766842|PMID:26774285)
UniProt PMID:26774285 MGI:5766842 NCBI chr10:8,766,023...8,797,055
Ensembl chr10:8,765,617...8,798,092
JBrowse link
regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA1 BRCA1 DNA repair associated involved_in ISO (MGI:5009779|PMID:20820192) BHF-UCL PMID:20820192 MGI:5009779 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 ISO RGD PMID:22880885 RGD:9588218 NCBI chr12:1,341,202...1,354,602
Ensembl chr12:1,341,191...1,354,584
JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in ISO (PMID:23254293)
(PMID:20938050)
UniProt PMID:20938050 PMID:23254293 NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096
JBrowse link
G H1-8 H1.8 linker histone involved_in ISO (MGI:5559660|PMID:22868987) UniProt PMID:22868987 MGI:5559660 NCBI chr20:5,614,822...5,619,136
Ensembl chr20:5,617,001...5,624,352
JBrowse link
G KDM1B lysine demethylase 1B involved_in ISO (MGI:4358629|PMID:19727073) UniProt PMID:19727073 MGI:4358629 NCBI chr35:16,954,483...17,014,261
Ensembl chr35:16,921,095...17,012,527
JBrowse link
G MBD1 methyl-CpG binding domain protein 1 ISO RGD PMID:20735989 RGD:9588647 NCBI chr 7:78,597,688...78,611,303
Ensembl chr 7:78,597,746...78,651,472
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 ISO RGD PMID:20735989 RGD:9588647 NCBI chr 1:21,232,260...21,283,687
Ensembl chr 1:21,235,967...21,283,346
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 ISO RGD PMID:20735989 RGD:9588647 NCBI chr20:57,296,713...57,312,988
Ensembl chr20:57,296,713...57,307,110
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:20735989 RGD:9588647 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G MIS18A MIS18 kinetochore protein A acts_upstream_of_or_within ISO (MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:5438906 NCBI chr31:27,025,657...27,039,001
Ensembl chr31:27,025,709...27,039,028
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:18,392,706...18,443,241
Ensembl chr25:18,392,409...18,443,241
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 ISO RGD PMID:23260200 RGD:10413908 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G PRDM14 PR/SET domain 14 acts_upstream_of_or_within ISO (MGI:5506832|PMID:23670199) MGI PMID:23670199 MGI:5506832 NCBI chr29:19,203,798...19,220,149
Ensembl chr29:19,203,807...19,220,518
JBrowse link
G PRMT5 protein arginine methyltransferase 5 ISO RGD PMID:22041901 RGD:9491827 NCBI chr 8:3,248,349...3,257,567
Ensembl chr 8:3,248,404...3,257,456
JBrowse link
G RLF RLF zinc finger involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5693990|PMID:25857663) Ensembl
MGI
PMID:25857663 GO_REF:0000107 MGI:5693990 NCBI chr15:2,723,511...2,815,305
Ensembl chr15:2,723,272...2,815,540
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:4939073|PMID:21295276) MGI PMID:21295276 MGI:4939073 NCBI chr 4:19,759,661...19,898,345
Ensembl chr 4:19,768,137...19,889,907
JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (MGI:5607719|PMID:20961378) MGI PMID:20961378 MGI:5607719 NCBI chr15:2,669,546...2,708,480
Ensembl chr15:2,670,326...2,709,160
JBrowse link
regulation of DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor involved_in ISO (PMID:22144908) UniProt PMID:22144908 NCBI chr 9:398,207...402,787
Ensembl chr 9:399,072...402,721
JBrowse link
G SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:17,089,514...17,167,917
Ensembl chr32:17,090,293...17,166,648
JBrowse link
G THOC1 THO complex 1 involved_in ISO (PMID:22144908) UniProt PMID:22144908 NCBI chr 7:67,082,100...67,136,592
Ensembl chr 7:67,082,231...67,136,525
JBrowse link
regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK9 cyclin dependent kinase 9 involved_in ISO (PMID:20493174) UniProt PMID:20493174 NCBI chr 9:55,615,271...55,619,493
Ensembl chr 9:55,615,827...55,620,236
JBrowse link
G IER3 immediate early response 3 acts_upstream_of_or_within ISO (MGI:5432078|PMID:20467439) MGI PMID:20467439 MGI:5432078 NCBI chr12:529,002...530,328
Ensembl chr12:529,339...530,232
JBrowse link
G PARG poly(ADP-ribose) glycohydrolase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:1,651,698...1,767,210
Ensembl chr28:1,652,670...1,766,895
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:80,146,335...80,234,732
Ensembl chr  X:80,146,040...80,235,739
JBrowse link
G SIRT7 sirtuin 7 involved_in ISO (PMID:27436229), (PMID:30944854) UniProt PMID:27436229 PMID:30944854 NCBI chr 9:377,141...383,355
Ensembl chr 9:376,445...442,919
JBrowse link
G SUV39H1 suppressor of variegation 3-9 homolog 1 acts_upstream_of_or_within ISO (MGI:5913114|PMID:23695662) MGI PMID:23695662 MGI:5913114 NCBI chr  X:41,894,623...41,907,854
Ensembl chr  X:41,893,045...41,906,403
JBrowse link
G USP1 ubiquitin specific peptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:47,655,533...47,666,767
Ensembl chr 5:47,656,039...47,666,210
JBrowse link
regulation of DNA strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 involved_in ISO (PMID:26323318) ParkinsonsUK-UCL PMID:26323318 NCBI chr38:2,157,109...2,188,543
Ensembl chr38:2,160,233...2,170,560
JBrowse link
regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZNF365 zinc finger protein 365 involved_in ISO (PMID:23966166) UniProt PMID:23966166 NCBI chr 4:14,297,652...14,429,634
Ensembl chr 4:14,311,302...14,331,568
JBrowse link
regulation of DNA-dependent DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in ISO (PMID:11125146)
(MGI:2388867|PMID:12192004)
UniProt PMID:11125146 PMID:12192004 MGI:2388867 NCBI chr 5:64,566,035...64,570,361
Ensembl chr 5:64,566,043...64,570,748
JBrowse link
G KAT7 lysine acetyltransferase 7 involved_in ISO (PMID:26620551) UniProt PMID:26620551 NCBI chr 9:25,841,916...25,875,245
Ensembl chr 9:25,842,054...25,873,674
JBrowse link
G TICRR TOPBP1 interacting checkpoint and replication regulator involved_in ISO (PMID:20116089) UniProt PMID:20116089 NCBI chr 3:52,584,913...52,629,731
Ensembl chr 3:52,584,454...52,629,164
JBrowse link
G WRNIP1 WRN helicase interacting protein 1 involved_in ISO (PMID:15670210) UniProt PMID:15670210 NCBI chr35:3,103,507...3,127,657
Ensembl chr35:3,103,418...3,127,504
JBrowse link
regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEK DEK proto-oncogene acts_upstream_of_or_within ISO (PMID:21653549) MGI PMID:21653549 NCBI chr35:17,014,802...17,045,308
Ensembl chr35:17,016,231...17,044,749
JBrowse link
G PML PML nuclear body scaffold involved_in ISO (PMID:21639834) UniProt PMID:21639834 NCBI chr30:37,232,337...37,278,434
Ensembl chr30:37,232,306...37,277,741
JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:3,887,408...4,023,364
Ensembl chr13:3,879,220...4,023,955
JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 involved_in ISO (PMID:15665856) UniProt PMID:15665856 NCBI chr 5:8,878,511...8,910,626
Ensembl chr 5:8,879,147...8,907,669
JBrowse link
G FIGNL1 fidgetin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:1,788,063...1,792,900
Ensembl chr18:1,788,801...1,790,831
JBrowse link
G KDM1A lysine demethylase 1A acts_upstream_of_or_within ISO (PMID:24217620) MGI PMID:24217620 NCBI chr 2:76,313,742...76,375,716
Ensembl chr 2:76,156,434...76,375,632
JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:18,085,048...18,092,861
Ensembl chr 6:18,085,116...18,092,854
JBrowse link
G PPP4R2 protein phosphatase 4 regulatory subunit 2 involved_in ISO (PMID:20154705) UniProt PMID:20154705 NCBI chr20:19,116,122...19,166,927
Ensembl chr20:19,118,124...19,167,264
JBrowse link
G RAD51 RAD51 recombinase involved_in ISS UniProt GO_REF:0000024 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in ISO (PMID:23754376) UniProt PMID:23754376 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G RPA2 replication protein A2 involved_in ISO (PMID:20154705) UniProt PMID:20154705 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (PMID:18957201) UniProt PMID:18957201 NCBI chr24:47,219,977...47,248,791 JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:41,675,539...41,800,697
Ensembl chr20:41,675,599...41,800,612
JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:19135889) UniProt PMID:19135889 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944
JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in ISO (PMID:23754376) UniProt PMID:23754376 NCBI chr35:79,188...503,687
Ensembl chr35:79,185...514,797
JBrowse link
G TERF2IP TERF2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:75,164,410...75,172,959
Ensembl chr 5:75,165,191...75,172,838
JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated acts_upstream_of_or_within ISO (MGI:3794139|PMID:18283110) MGI PMID:18283110 MGI:3794139 NCBI chr16:33,423,546...33,517,458
Ensembl chr16:33,423,876...33,515,452
JBrowse link
G USP51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998) UniProt PMID:27083998 NCBI chr  X:47,055,226...47,059,552 JBrowse link
G ZNF365 zinc finger protein 365 involved_in ISO (PMID:23966166) UniProt PMID:23966166 NCBI chr 4:14,297,652...14,429,634
Ensembl chr 4:14,311,302...14,331,568
JBrowse link
regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 NOT|involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr10:64,696,068...64,733,027
Ensembl chr10:64,696,111...64,730,553
JBrowse link
G LOC100688177 protein DEK-like acts_upstream_of_or_within ISO (MGI:5317387|PMID:21653549) MGI PMID:21653549 MGI:5317387 NCBI chr 3:10,279,204...10,280,935 JBrowse link
G MRNIP MRN complex interacting protein involved_in ISO (PMID:27568553) UniProt PMID:27568553 NCBI chr11:1,834,148...1,859,601
Ensembl chr11:1,833,967...1,859,347
JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 acts_upstream_of_or_within ISO (MGI:5462481|PMID:23241889) MGI PMID:23241889 MGI:5462481 NCBI chr 3:62,164,888...62,228,006
Ensembl chr 3:62,167,939...62,228,035
JBrowse link
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:377,141...383,355
Ensembl chr 9:376,445...442,919
JBrowse link
G USP51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998) UniProt PMID:27083998 NCBI chr  X:47,055,226...47,059,552 JBrowse link
G WAS WASP actin nucleation promoting factor NOT|involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr  X:41,882,240...41,890,053
Ensembl chr  X:41,882,875...41,890,058
JBrowse link
regulation of endodeoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPM1 nucleophosmin 1 involved_in ISO (PMID:19188445) UniProt PMID:19188445 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:19934257) UniProt PMID:19934257 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor acts_upstream_of_or_within ISO (MGI:4887518|PMID:21211721) MGI PMID:21211721 MGI:4887518 NCBI chr10:67,454,500...67,522,659
Ensembl chr10:67,454,356...67,521,761
JBrowse link
G MIR181B-2 microRNA mir-181b-2 acts_upstream_of_or_within ISO (MGI:3817382|PMID:18762567) MGI PMID:18762567 MGI:3817382 NCBI chr 9:58,301,314...58,301,373
Ensembl chr 9:58,301,300...58,301,388
JBrowse link
G MIR181D microRNA mir-181d acts_upstream_of_or_within ISO (MGI:3817382|PMID:18762567) MGI PMID:18762567 MGI:3817382 NCBI chr20:48,593,158...48,593,221 JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,859,154...42,896,044
Ensembl chr 9:42,859,361...42,904,487
JBrowse link
regulation of isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP3 forkhead box P3 acts_upstream_of_or_within ISO (MGI:3695768|PMID:16275384) MGI PMID:16275384 MGI:3695768 NCBI chr  X:42,331,229...42,362,841
Ensembl chr  X:42,344,108...42,350,758
JBrowse link
G IL27RA interleukin 27 receptor subunit alpha acts_upstream_of_or_within ISO (MGI:1926579|PMID:11057672) MGI PMID:11057672 MGI:1926579 NCBI chr20:48,456,766...48,475,414
Ensembl chr20:48,457,134...48,472,450
JBrowse link
G NDFIP1 Nedd4 family interacting protein 1 acts_upstream_of_or_within ISO (MGI:3694584|PMID:17137798) MGI PMID:17137798 MGI:3694584 NCBI chr 2:36,978,148...37,065,247
Ensembl chr 2:36,961,024...37,064,303
JBrowse link
G SLC15A4 solute carrier family 15 member 4 involved_in ISO (MGI:5649169|PMID:25310967) UniProt PMID:25310967 MGI:5649169 NCBI chr26:2,803,798...2,832,057
Ensembl chr26:2,802,724...2,831,530
JBrowse link
regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:14,559,476...14,588,950
Ensembl chr 9:14,559,388...14,588,530
JBrowse link
regulation of mitochondrial DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MPV17 mitochondrial inner membrane protein MPV17 involved_in ISO (PMID:26760297)
(MGI:5776643|PMID:26760297)
UniProt PMID:26760297 MGI:5776643 NCBI chr17:21,280,523...21,290,967
Ensembl chr17:21,281,361...21,290,339
JBrowse link
G STOX1 storkhead box 1 involved_in ISO (PMID:24738702) UniProt PMID:24738702 NCBI chr 4:20,013,893...20,065,480
Ensembl chr 4:20,014,007...20,060,394
JBrowse link
regulation of mitotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD50 RAD50 double strand break repair protein involved_in ISO (PMID:8756642) UniProt PMID:8756642 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819
JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL4A cullin 4A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3850765|PMID:19481525) Ensembl
MGI
PMID:19481525 GO_REF:0000107 MGI:3850765 NCBI chr22:60,624,215...60,667,844
Ensembl chr22:60,624,241...60,666,616
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G KAT7 lysine acetyltransferase 7 involved_in ISO (PMID:28719581) UniProt PMID:28719581 NCBI chr 9:25,841,916...25,875,245
Ensembl chr 9:25,842,054...25,873,674
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:19506022) MGI
Ensembl
PMID:19506022 GO_REF:0000107 NCBI chr27:42,915,334...43,032,293
Ensembl chr27:42,915,634...42,951,323
JBrowse link
regulation of restriction endodeoxyribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 involved_in ISO (PMID:17803946) UniProt PMID:17803946 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (MGI:5616996|PMID:25378300) MGI PMID:25378300 MGI:5616996 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
regulation of telomerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase NOT|involved_in ISO (PMID:26586427) BHF-UCL PMID:26586427 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G HMBOX1 homeobox containing 1 involved_in ISO (PMID:23685356) BHF-UCL PMID:23685356 NCBI chr25:28,489,472...28,679,322
Ensembl chr25:28,489,506...28,679,748
JBrowse link
G NABP2 nucleic acid binding protein 2 NOT|involved_in ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chr10:546,964...551,360
Ensembl chr10:546,964...551,107
JBrowse link
G PARP4 poly(ADP-ribose) polymerase family member 4 involved_in ISO (PMID:15169895) BHF-UCL PMID:15169895 NCBI chr25:18,447,413...18,544,990
Ensembl chr25:18,447,413...18,544,777
JBrowse link
regulation of telomere maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC8 histone deacetylase 8 involved_in ISO (PMID:16809764) BHF-UCL PMID:16809764 NCBI chr  X:56,357,205...56,574,443
Ensembl chr  X:56,357,177...56,574,401
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in ISO (MGI:5438900|PMID:22633954) BHF-UCL PMID:22633954 MGI:5438900 NCBI chr32:6,323,444...6,341,238
Ensembl chr32:6,323,469...6,341,166
JBrowse link
G LMNA lamin A/C involved_in ISO (PMID:25399868) BHF-UCL PMID:25399868 NCBI chr 7:41,702,491...41,719,870
Ensembl chr 7:41,508,450...41,746,931
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G PIF1 PIF1 5'-to-3' DNA helicase involved_in ISO (PMID:16522649) HGNC-UCL PMID:16522649 NCBI chr30:29,223,507...29,232,584
Ensembl chr30:29,157,119...29,232,043
JBrowse link
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase involved_in ISO (PMID:17916692) BHF-UCL PMID:17916692 NCBI chr 6:26,224,837...26,306,394
Ensembl chr 6:26,224,900...26,315,908
JBrowse link
G SMG5 SMG5 nonsense mediated mRNA decay factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:41,598,111...41,624,575
Ensembl chr 7:41,598,104...41,624,575
JBrowse link
G SMG6 SMG6 nonsense mediated mRNA decay factor involved_in ISO (PMID:12699629), (PMID:17916692) BHF-UCL PMID:12699629 PMID:17916692 NCBI chr 9:46,162,991...46,405,856
Ensembl chr 9:46,164,492...46,405,748
JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in ISO (PMID:22536324) CACAO PMID:22536324 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
G TERF2IP TERF2 interacting protein involved_in ISO (PMID:15100233) BHF-UCL PMID:15100233 NCBI chr 5:75,164,410...75,172,959
Ensembl chr 5:75,165,191...75,172,838
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:44,234,411...44,271,129
Ensembl chr20:44,236,264...44,270,916
JBrowse link
G YLPM1 YLP motif containing 1 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3525956|PMID:15100092)
GO_Central
MGI
PMID:15100092 PMID:21873635 MGI:3525956 NCBI chr 8:47,878,176...47,957,714
Ensembl chr 8:47,878,298...47,980,569
JBrowse link
regulation of telomere maintenance via telomerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in ISO (PMID:26586433) BHF-UCL PMID:26586433 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G POT1 protection of telomeres 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in ISO (PMID:19864690)
(PMID:23685356)
BHF-UCL PMID:19864690 PMID:23685356 NCBI chr 5:80,278,224...80,305,315
Ensembl chr 5:80,277,505...80,306,342
JBrowse link
regulation of telomere maintenance via telomere lengthening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TINF2 TERF1 interacting nuclear factor 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:4,221,183...4,223,863
Ensembl chr 8:4,221,269...4,223,512
JBrowse link
regulation of transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in ISO (PMID:16916636), (PMID:17297471) UniProt PMID:16916636 PMID:17297471 NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889
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Term paths to the root
Path 1
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  biological_process 13868
    metabolic process 8967
      regulation of metabolic process 5650
        regulation of macromolecule metabolic process 5204
          regulation of DNA metabolic process 365
            negative regulation of DNA metabolic process + 116
            positive regulation of DNA metabolic process + 218
            regulation of DNA biosynthetic process + 121
            regulation of DNA catabolic process + 13
            regulation of DNA demethylation + 8
            regulation of DNA double-strand break processing 1
            regulation of DNA ligation + 5
            regulation of DNA methylation + 29
            regulation of DNA recombination + 100
            regulation of DNA repair + 125
            regulation of DNA replication termination + 0
            regulation of DNA strand elongation + 2
            regulation of DNA strand resection involved in replication fork processing + 1
            regulation of DNA-dependent DNA replication initiation + 6
            regulation of deoxyribonuclease activity + 10
            regulation of mitochondrial DNA metabolic process + 4
            regulation of replication fork arrest at rDNA repeats 0
            regulation of strand invasion + 1
            regulation of telomere maintenance + 80
            regulation of transposon integration + 0
Path 2
Term Annotations click to browse term
  biological_process 13868
    cellular process 13108
      cellular metabolic process 8178