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ONTOLOGY REPORT - ANNOTATIONS


Term:actin filament bundle assembly
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Accession:GO:0051017 term browser browse the term
Definition:The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness.
Synonyms:related_synonym: actin bundling activity;   actin cable assembly;   actin cable formation
 alt_id: GO:0045011


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actin filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO (MGI:2155495|PMID:11752434) MGI PMID:11752434 MGI:2155495 NCBI chr 7:20,696,659...20,735,362
Ensembl chr 7:20,700,144...20,727,410
JBrowse link
G ACTN1 actinin alpha 1 IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 8:42,714,806...42,808,318
Ensembl chr 8:42,712,142...42,808,323
JBrowse link
G ACTN4 actinin alpha 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:114,354,993...114,427,997
Ensembl chr 1:114,309,693...114,427,991
JBrowse link
G ADD1 adducin 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:61,356,643...61,443,851
Ensembl chr 3:61,358,162...61,474,830
JBrowse link
G ADD2 adducin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:69,056,367...69,098,775
Ensembl chr10:69,057,267...69,098,521
JBrowse link
G ADD3 adducin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:21,402,068...21,527,006
Ensembl chr28:21,403,680...21,525,063
JBrowse link
G AIF1 allograft inflammatory factor 1 ISS
IBA
IEA
(PMID:21873635) UniProtKB
GO_Central
Ensembl
PMID:21873635 GO_REF:0000024 GO_REF:0000107 NCBI chr12:1,104,350...1,106,179
Ensembl chr12:1,104,394...1,106,177
JBrowse link
G AIF1L allograft inflammatory factor 1 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:52,944,925...52,966,953
Ensembl chr 9:52,947,570...52,966,894
JBrowse link
G BAIAP2 BAR/IMD domain containing adaptor protein 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 9:923,519...992,254
Ensembl chr 9:923,493...981,923
JBrowse link
G BAIAP2L1 BAR/IMD domain containing adaptor protein 2 like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:10,968,100...11,055,040
Ensembl chr 6:10,968,060...11,053,494
JBrowse link
G BAIAP2L2 BAR/IMD domain containing adaptor protein 2 like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:26,560,328...26,587,654
Ensembl chr10:26,560,494...26,574,052
JBrowse link
G CALD1 caldesmon 1 ISO RGD PMID:3384851 RGD:2303065 NCBI chr16:13,087,419...13,279,648
Ensembl chr16:13,084,109...13,279,384
JBrowse link
G CORO1B coronin 1B IEA Ensembl GO_REF:0000107 NCBI chr18:50,027,274...50,031,601
Ensembl chr18:50,027,275...50,050,907
JBrowse link
G DBNL drebrin like NOT ISO (MGI:1353214|PMID:10637315) MGI PMID:10637315 MGI:1353214
G DMD dystrophin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:26,290,903...28,444,635
Ensembl chr  X:26,290,910...28,333,576
JBrowse link
G DMTN dematin actin binding protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:35,163,867...35,188,761
Ensembl chr25:35,165,876...35,176,754
JBrowse link
G DPYSL3 dihydropyrimidinase like 3 ISS
IEA
UniProtKB
InterPro
GO_REF:0000002 GO_REF:0000024 NCBI chr 2:41,687,725...41,809,402
Ensembl chr 2:41,690,845...41,802,376
JBrowse link
G EPS8 epidermal growth factor receptor pathway substrate 8 IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr27:30,893,884...31,070,401
Ensembl chr27:30,893,713...31,069,770
JBrowse link
G ESPN espin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:60,285,185...60,316,261
Ensembl chr 5:60,285,312...60,315,676
JBrowse link
G EZR ezrin IEA Ensembl GO_REF:0000107 NCBI chr 1:48,160,206...48,210,036
Ensembl chr 1:48,160,206...48,210,036
JBrowse link
G FAM107A family with sequence similarity 107 member A IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr20:32,047,132...32,099,815
Ensembl chr20:32,047,625...32,097,585
JBrowse link
G FMN2 formin 2 ISO (MGI:5476853|PMID:23439682) MGI PMID:23439682 MGI:5476853 NCBI chr 7:31,657,371...32,024,777
Ensembl chr 7:31,697,245...32,023,472
JBrowse link
G FSCN1 fascin actin-bundling protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:12,360,849...12,370,906
Ensembl chr 6:12,354,599...12,370,808
JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:616,088...622,152
Ensembl chr 9:617,609...621,882
JBrowse link
G FSCN3 fascin actin-bundling protein 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:8,719,857...8,730,881
Ensembl chr14:8,722,069...8,730,729
JBrowse link
G GAS7 growth arrest specific 7 ISO (MGI:2159085|PMID:11795944) MGI PMID:11795944 MGI:2159085 NCBI chr 5:34,334,477...34,457,189
Ensembl chr 5:34,339,098...34,457,164
JBrowse link
G LCP1 lymphocyte cytosolic protein 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
Ensembl
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr22:4,955,453...5,059,654
Ensembl chr22:4,992,347...5,059,636
JBrowse link
G LGALS7B galectin 7B IEA Ensembl GO_REF:0000107 NCBI chr 1:114,309,641...114,311,861
Ensembl chr 1:114,309,693...114,427,991
JBrowse link
G LIMA1 LIM domain and actin binding 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr27:4,473,151...4,561,916
Ensembl chr27:4,473,179...4,561,574
JBrowse link
G MARCKS myristoylated alanine rich protein kinase C substrate IEA Ensembl GO_REF:0000107 NCBI chr12:69,980,003...69,987,150
Ensembl chr12:69,980,433...69,984,848
JBrowse link
G MICAL1 microtubule associated monooxygenase, calponin and LIM domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:66,350,459...66,358,391
Ensembl chr12:66,350,427...66,360,615
JBrowse link
G MYH10 myosin heavy chain 10 ISO RGD PMID:22992457 RGD:12798526 NCBI chr 5:33,239,800...33,360,459
Ensembl chr 5:33,241,266...33,360,934
JBrowse link
G MYH9 myosin heavy chain 9 ISO RGD PMID:22992457 RGD:12798526 NCBI chr10:28,063,626...28,122,953
Ensembl chr10:28,063,624...28,122,953
JBrowse link
G MYO1B myosin IB ISS UniProtKB GO_REF:0000024 NCBI chr37:1,748,287...1,921,360
Ensembl chr37:1,747,974...1,920,349
JBrowse link
G PAWR pro-apoptotic WT1 regulator ISO PMID:16229834 UniProt PMID:16229834 RGD:8554822 NCBI chr15:22,114,014...22,159,287 JBrowse link
G PCDH15 protocadherin related 15 ISO (MGI:4950645|PMID:21427143) MGI PMID:21427143 MGI:4950645 NCBI chr26:33,426,728...34,589,208
Ensembl chr26:33,719,839...34,588,017
JBrowse link
G PLS1 plastin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:38,243,631...38,347,195
Ensembl chr23:38,243,024...38,347,202
JBrowse link
G PLS3 plastin 3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr  X:88,308,817...88,399,682
Ensembl chr  X:88,308,888...88,398,810
JBrowse link
G PTPRCAP protein tyrosine phosphatase receptor type C associated protein IEA Ensembl GO_REF:0000107 NCBI chr18:50,031,740...50,034,200
Ensembl chr18:50,027,275...50,050,907
JBrowse link
G RHOD ras homolog family member D IEA Ensembl GO_REF:0000107 NCBI chr18:50,320,428...50,330,108
Ensembl chr18:50,321,400...50,330,103
JBrowse link
G SH3BP2 SH3 domain binding protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:61,454,945...61,488,951
Ensembl chr 3:61,358,162...61,474,830
JBrowse link
G SHROOM1 shroom family member 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:21,115,103...21,120,934
Ensembl chr11:21,116,370...21,119,806
JBrowse link
G SHROOM2 shroom family member 2 NOT ISO (MGI:3690292|PMID:16684770) UniProt PMID:16684770 MGI:3690292 NCBI chr  X:6,499,570...6,642,738
Ensembl chr  X:6,499,354...6,641,946
JBrowse link
G SWAP70 switching B cell complex subunit SWAP70 IEA Ensembl GO_REF:0000107 NCBI chr21:32,910,547...32,985,617
Ensembl chr21:32,910,563...32,984,580
JBrowse link
G TRIOBP TRIO and F-actin binding protein ISO (MGI:4881391|PMID:20510926) MGI PMID:20510926 MGI:4881391 NCBI chr10:26,856,981...26,913,330
Ensembl chr10:26,857,678...26,911,083
JBrowse link
G USH1C USH1 protein network component harmonin ISO (MGI:2447265|PMID:12485990) MGI PMID:12485990 MGI:2447265 NCBI chr21:40,055,786...40,100,685
Ensembl chr21:40,055,730...40,101,430
JBrowse link
actin rod assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSP90B1 heat shock protein 90 beta family member 1 IEA Ensembl GO_REF:0000107 NCBI chr15:42,456,793...42,474,122
Ensembl chr15:42,456,764...42,579,311
JBrowse link
G PDXP pyridoxal phosphatase IEA Ensembl GO_REF:0000107 NCBI chr10:26,945,751...26,952,234
Ensembl chr10:26,946,838...26,952,217
JBrowse link
contractile actin filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SRF serum response factor ISO (MGI:3513738|PMID:15569937) MGI PMID:15569937 MGI:3513738 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533
JBrowse link
formin-nucleated actin cable assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FMN2 formin 2 ISO (PMID:26287480)
(MGI:5050782|PMID:21620703)
UniProt PMID:21620703 PMID:26287480 MGI:5050782 NCBI chr 7:31,657,371...32,024,777
Ensembl chr 7:31,697,245...32,023,472
JBrowse link
G SPIRE1 spire type actin nucleation factor 1 ISO (PMID:26287480)
(MGI:5050782|PMID:21620703)
UniProt PMID:21620703 PMID:26287480 MGI:5050782 NCBI chr 7:77,860,287...78,062,894
Ensembl chr 7:77,854,875...78,092,466
JBrowse link
G SPIRE2 spire type actin nucleation factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:63,732,855...63,765,162
Ensembl chr 5:63,732,842...63,753,419
JBrowse link
microvillar actin bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ESPN espin ISO (PMID:29572253) UniProt PMID:29572253 NCBI chr 5:60,285,185...60,316,261
Ensembl chr 5:60,285,312...60,315,676
JBrowse link
negative regulation of actin filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFL1 cofilin 1 ISO RGD PMID:24093776 RGD:11570550 NCBI chr18:51,404,649...51,408,240
Ensembl chr18:51,401,659...51,408,212
JBrowse link
G DBN1 drebrin 1 ISO RGD PMID:8769857 RGD:2317774 NCBI chr 4:35,899,969...35,913,015
Ensembl chr 4:35,889,392...35,912,507
JBrowse link
G MAP3K1 mitogen-activated protein kinase kinase kinase 1 ISO prevents phenylephrine-induced actin organization RGD PMID:9155015 RGD:2293527 NCBI chr 2:43,918,210...43,996,817
Ensembl chr 2:43,917,604...43,995,209
JBrowse link
G PFN1 profilin 1 ISO (PMID:23153535) UniProtKB PMID:23153535 NCBI chr 5:31,670,483...31,671,891
Ensembl chr 5:31,670,194...31,671,895
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase IEA Ensembl GO_REF:0000107 NCBI chr 1:49,886,887...51,201,930
Ensembl chr 1:49,889,005...51,201,764
JBrowse link
G SHANK1 SH3 and multiple ankyrin repeat domains 1 ISO (MGI:3846509|PMID:19208628) MGI PMID:19208628 MGI:3846509 NCBI chr 1:106,086,094...106,128,700
Ensembl chr 1:106,097,048...106,114,673
JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 ISO (MGI:3846509|PMID:19208628) MGI PMID:19208628 MGI:3846509 NCBI chr10:16,621,445...16,665,366 JBrowse link
negative regulation of stress fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARAP1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 IEA Ensembl GO_REF:0000107 NCBI chr21:25,468,653...25,531,644
Ensembl chr21:25,443,386...25,531,165
JBrowse link
G ARHGAP28 Rho GTPase activating protein 28 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 7:73,023,681...73,260,093
Ensembl chr 7:73,055,118...73,257,375
JBrowse link
G ARHGAP6 Rho GTPase activating protein 6 IEA Ensembl GO_REF:0000107 NCBI chr  X:7,704,838...8,188,358
Ensembl chr  X:7,706,156...7,951,557
JBrowse link
G ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 ISO (PMID:25753039) ARUK-UCL PMID:25753039 NCBI chr20:52,196,670...52,281,491 JBrowse link
G CGNL1 cingulin like 1 IEA Ensembl GO_REF:0000107 NCBI chr30:22,529,971...22,715,776
Ensembl chr30:22,612,828...22,718,493
JBrowse link
G CLASP1 cytoplasmic linker associated protein 1 IEA Ensembl GO_REF:0000107 NCBI chr19:28,563,189...28,830,503
Ensembl chr19:28,595,040...28,827,645
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 IEA Ensembl GO_REF:0000107 NCBI chr23:3,261,778...3,423,698
Ensembl chr23:3,246,522...3,421,716
JBrowse link
G CORO2B coronin 2B IEA Ensembl GO_REF:0000107 NCBI chr30:32,574,068...32,701,494
Ensembl chr30:32,627,373...32,702,757
JBrowse link
G DLC1 DLC1 Rho GTPase activating protein IEA Ensembl GO_REF:0000107 NCBI chr16:36,531,754...36,943,033
Ensembl chr16:36,531,754...36,943,033
JBrowse link
G F11R F11 receptor IEA Ensembl GO_REF:0000107 NCBI chr38:21,433,819...21,456,722
Ensembl chr38:21,451,952...21,454,959
JBrowse link
G FRMD7 FERM domain containing 7 IEA Ensembl GO_REF:0000107 NCBI chr  X:103,027,980...103,055,139
Ensembl chr  X:103,028,814...103,079,148
JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K ISS UniProtKB GO_REF:0000024 NCBI chr 9:45,660,445...45,680,407
Ensembl chr 9:45,660,446...45,680,363
JBrowse link
G MET MET proto-oncogene, receptor tyrosine kinase IEA Ensembl GO_REF:0000107 NCBI chr14:55,599,047...55,711,626
Ensembl chr14:55,598,337...55,724,027
JBrowse link
G MYOC myocilin ISS UniProtKB GO_REF:0000024 NCBI chr 7:27,335,314...27,346,821
Ensembl chr 7:27,335,314...27,346,820
JBrowse link
G PAK2 p21 (RAC1) activated kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr33:29,774,645...29,863,661
Ensembl chr33:29,774,593...29,987,478
JBrowse link
G PFN1 profilin 1 ISO (PMID:23153535) UniProtKB PMID:23153535 NCBI chr 5:31,670,483...31,671,891
Ensembl chr 5:31,670,194...31,671,895
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 IEA Ensembl GO_REF:0000107 NCBI chr33:16,521,087...16,615,774
Ensembl chr33:16,497,202...16,614,132
JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 ISO (MGI:6450670|PMID:11038173) BHF-UCL PMID:11038173 MGI:6450670 NCBI chr 2:53,447,802...53,527,563
Ensembl chr 2:53,448,286...53,524,970
JBrowse link
G PPFIA1 PTPRF interacting protein alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr18:47,974,109...48,060,331
Ensembl chr18:47,975,441...48,058,377
JBrowse link
G PPP1R9A protein phosphatase 1 regulatory subunit 9A ISO RGD PMID:12052877 RGD:1299363 NCBI chr14:20,251,791...20,563,315
Ensembl chr14:20,251,738...20,557,208
JBrowse link
G S1PR1 sphingosine-1-phosphate receptor 1 ISO RGD PMID:11094076 RGD:1581790 NCBI chr 6:48,897,320...48,902,206
Ensembl chr 6:48,897,449...48,900,037
JBrowse link
G STMN1 stathmin 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:74,035,462...74,043,352
Ensembl chr 2:74,035,457...74,043,349
JBrowse link
G TACSTD2 tumor associated calcium signal transducer 2 ISO (MGI:5315060|PMID:22194864) UniProt PMID:22194864 MGI:5315060 NCBI chr 5:51,122,469...51,123,753 JBrowse link
G TJP1 tight junction protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:38,997,122...39,076,617
Ensembl chr 3:38,997,076...39,241,574
JBrowse link
G TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 IEA Ensembl GO_REF:0000107 NCBI chr37:2,414,208...2,635,283
Ensembl chr37:2,414,440...2,635,431
JBrowse link
G WAS WASP actin nucleation promoting factor IEA Ensembl GO_REF:0000107 NCBI chr  X:41,882,240...41,890,053
Ensembl chr  X:41,882,875...41,890,058
JBrowse link
G WASF2 WASP family member 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:72,800,959...72,873,728
Ensembl chr 2:72,850,525...72,872,403
JBrowse link
parallel actin filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIF1 allograft inflammatory factor 1 IEA Ensembl GO_REF:0000107 NCBI chr12:1,104,350...1,106,179
Ensembl chr12:1,104,394...1,106,177
JBrowse link
G ESPN espin ISO (MGI:1350756|PMID:10588661) MGI PMID:10588661 MGI:1350756 NCBI chr 5:60,285,185...60,316,261
Ensembl chr 5:60,285,312...60,315,676
JBrowse link
G FSCN1 fascin actin-bundling protein 1 ISO (PMID:21685497) UniProt PMID:21685497 NCBI chr 6:12,360,849...12,370,906
Ensembl chr 6:12,354,599...12,370,808
JBrowse link
G USH1C USH1 protein network component harmonin ISO (MGI:2447265|PMID:12485990) MGI PMID:12485990 MGI:2447265 NCBI chr21:40,055,786...40,100,685
Ensembl chr21:40,055,730...40,101,430
JBrowse link
positive regulation of actin filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CX3CL1 C-X3-C motif chemokine ligand 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:59,022,794...59,032,095
Ensembl chr 2:59,022,794...59,032,095
JBrowse link
G FLNA filamin A ISO RGD PMID:22872576 RGD:7207404 NCBI chr  X:122,058,303...122,083,467
Ensembl chr  X:122,061,455...122,083,203
JBrowse link
G ID1 inhibitor of DNA binding 1, HLH protein ISO RGD PMID:16628634 RGD:9686088 NCBI chr24:21,094,339...21,096,276
Ensembl chr24:21,094,755...21,096,276
JBrowse link
G LIMK1 LIM domain kinase 1 ISO (PMID:17512523) BHF-UCL PMID:17512523 NCBI chr 6:6,263,374...6,285,734
Ensembl chr 6:6,264,548...6,286,026
JBrowse link
G LOC106558389 profilin-1-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:49,614,163...49,614,624 JBrowse link
G MTSS1 MTSS I-BAR domain containing 1 ISO (MGI:5317250|PMID:21406566) MGI PMID:21406566 MGI:5317250 NCBI chr13:22,633,001...22,794,960
Ensembl chr13:22,635,230...22,794,453
JBrowse link
G PFN1 profilin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:31,670,483...31,671,891
Ensembl chr 5:31,670,194...31,671,895
JBrowse link
G PFN2 profilin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:44,686,126...44,691,801
Ensembl chr23:44,686,937...44,691,800
JBrowse link
G PLEK pleckstrin IEA Ensembl GO_REF:0000107 NCBI chr10:67,395,972...67,421,247
Ensembl chr10:67,395,972...67,421,247
JBrowse link
G SWAP70 switching B cell complex subunit SWAP70 IEA Ensembl GO_REF:0000107 NCBI chr21:32,910,547...32,985,617
Ensembl chr21:32,910,563...32,984,580
JBrowse link
G SYNPO synaptopodin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 4:58,501,361...58,549,340
Ensembl chr 4:58,497,734...58,550,438
JBrowse link
G SYNPO2 synaptopodin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:37,844,844...38,026,755
Ensembl chr32:37,812,903...38,024,489
JBrowse link
G SYNPO2L synaptopodin 2 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:24,168,030...24,177,710
Ensembl chr 4:24,169,707...24,177,813
JBrowse link
G VIL1 villin 1 IEA Ensembl GO_REF:0000107 NCBI chr37:25,065,887...25,090,238
Ensembl chr37:25,065,180...25,090,705
JBrowse link
positive regulation of stress fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase IEA Ensembl GO_REF:0000107 NCBI chr 9:53,118,462...53,262,092
Ensembl chr 9:53,119,641...53,261,307
JBrowse link
G APOA1 apolipoprotein A1 IEA Ensembl GO_REF:0000107 NCBI chr 5:16,740,071...16,742,081
Ensembl chr 5:16,740,130...16,741,943
JBrowse link
G ARHGEF10 Rho guanine nucleotide exchange factor 10 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:54,293,534...54,378,706
Ensembl chr16:54,293,435...54,347,555
JBrowse link
G ARHGEF10L Rho guanine nucleotide exchange factor 10 like IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:80,666,992...80,827,032
Ensembl chr 2:80,642,298...80,808,567
JBrowse link
G ARHGEF15 Rho guanine nucleotide exchange factor 15 ISS UniProtKB GO_REF:0000024 NCBI chr 5:33,096,108...33,110,551
Ensembl chr 5:33,098,159...33,121,083
JBrowse link
G ARHGEF5 Rho guanine nucleotide exchange factor 5 IEA Ensembl GO_REF:0000107 NCBI chr16:5,648,947...5,673,488
Ensembl chr16:5,649,944...5,673,568
JBrowse link
G BAG4 BAG cochaperone 4 IEA Ensembl GO_REF:0000107 NCBI chr16:27,270,947...27,304,178
Ensembl chr16:27,273,848...27,303,786
JBrowse link
G BRAF B-Raf proto-oncogene, serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr16:8,222,909...8,318,179
Ensembl chr16:8,222,907...8,317,906
JBrowse link
G CARMIL1 capping protein regulator and myosin 1 linker 1 IEA Ensembl GO_REF:0000107 NCBI chr35:23,268,438...23,581,794
Ensembl chr35:23,268,723...23,581,403
JBrowse link
G CCDC88A coiled-coil domain containing 88A IEA Ensembl GO_REF:0000107 NCBI chr10:56,167,907...56,300,974
Ensembl chr10:56,170,479...56,300,908
JBrowse link
G CCN2 cellular communication network factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:25,508,082...25,511,058
Ensembl chr 1:25,507,662...25,510,145
JBrowse link
G CD47 CD47 molecule ISO PMID:12023387 ARUK-UCL PMID:12023387 RGD:625650 NCBI chr33:13,315,984...13,362,971
Ensembl chr33:13,319,266...13,363,580
JBrowse link
G CDC42 cell division cycle 42 ISO (PMID:26051942), (PMID:8625410) BHF-UCL PMID:8625410 PMID:26051942 NCBI chr 2:77,153,276...77,169,947
Ensembl chr 2:77,153,095...77,199,211
JBrowse link
G EPHA1 EPH receptor A1 ISS UniProtKB GO_REF:0000024 NCBI chr16:6,287,757...6,304,082
Ensembl chr16:6,287,910...6,304,090
JBrowse link
G EVL Enah/Vasp-like ISO (PMID:23153535) UniProtKB PMID:23153535 NCBI chr 8:68,352,717...68,461,684
Ensembl chr 8:68,352,853...68,484,269
JBrowse link
G FERMT2 fermitin family member 2 ISO (PMID:29496737) ARUK-UCL PMID:29496737 NCBI chr 8:29,083,538...29,135,915
Ensembl chr 8:29,084,531...29,133,391
JBrowse link
G FHOD1 formin homology 2 domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:82,129,846...82,145,605
Ensembl chr 5:82,129,965...82,145,604
JBrowse link
G GPR65 G protein-coupled receptor 65 IEA Ensembl GO_REF:0000107 NCBI chr 8:59,334,544...59,351,039
Ensembl chr 8:59,349,839...59,350,864
JBrowse link
G ITGB1BP1 integrin subunit beta 1 binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr17:6,524,602...6,537,321
Ensembl chr17:6,524,613...6,537,233
JBrowse link
G KISS1R KISS1 receptor ISO RGD PMID:11457843 RGD:1357971 NCBI chr20:57,756,046...57,758,940
Ensembl chr20:57,756,197...57,758,940
JBrowse link
G LIMCH1 LIM and calponin homology domains 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:38,518,653...38,816,804
Ensembl chr13:38,518,644...38,814,369
JBrowse link
G LIMK1 LIM domain kinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:6,263,374...6,285,734
Ensembl chr 6:6,264,548...6,286,026
JBrowse link
G LPAR1 lysophosphatidic acid receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr11:65,690,806...65,822,166
Ensembl chr11:65,692,973...65,822,312
JBrowse link
G MTOR mechanistic target of rapamycin kinase IEA Ensembl GO_REF:0000107 NCBI chr 2:84,818,893...84,939,283
Ensembl chr 2:84,787,708...84,939,114
JBrowse link
G MYOC myocilin ISS UniProtKB GO_REF:0000024 NCBI chr 7:27,335,314...27,346,821
Ensembl chr 7:27,335,314...27,346,820
JBrowse link
G NF2 neurofibromin 2 IEA Ensembl GO_REF:0000107 NCBI chr26:22,816,869...22,896,103
Ensembl chr26:22,816,551...22,894,196
JBrowse link
G NOX4 NADPH oxidase 4 ISO RGD PMID:17511984 RGD:2324670 NCBI chr21:10,615,153...10,782,927
Ensembl chr21:10,615,970...10,775,277
JBrowse link
G NRP1 neuropilin 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:3,416,062...3,553,929
Ensembl chr 2:3,413,821...3,552,483
JBrowse link
G PAK1 p21 (RAC1) activated kinase 1 ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr21:21,341,530...21,409,535
Ensembl chr21:21,265,484...21,408,416
JBrowse link
G PDLIM4 PDZ and LIM domain 4 ISO PMID:22659164
PMID:14729062
UniProt PMID:14729062 PMID:22659164 RGD:1300470 RGD:13432282 NCBI chr11:20,570,839...20,587,185
Ensembl chr11:20,570,833...20,585,594
JBrowse link
G PFN1 profilin 1 ISO RGD PMID:12740026 RGD:2324854 NCBI chr 5:31,670,483...31,671,891
Ensembl chr 5:31,670,194...31,671,895
JBrowse link
G PFN2 profilin 2 IEA Ensembl GO_REF:0000107 NCBI chr23:44,686,126...44,691,801
Ensembl chr23:44,686,937...44,691,800
JBrowse link
G PPM1E protein phosphatase, Mg2+/Mn2+ dependent 1E IEA Ensembl GO_REF:0000107 NCBI chr 9:33,350,379...33,560,523
Ensembl chr 9:33,350,614...33,560,272
JBrowse link
G PPM1F protein phosphatase, Mg2+/Mn2+ dependent 1F IEA Ensembl GO_REF:0000107 NCBI chr26:31,162,810...31,193,586
Ensembl chr26:31,166,593...31,193,587
JBrowse link
G PRKCQ protein kinase C theta ISO RGD PMID:9353339 RGD:1625621 NCBI chr 2:29,319,123...29,505,338
Ensembl chr 2:29,318,870...29,505,337
JBrowse link
G PXN paxillin IEA Ensembl GO_REF:0000107 NCBI chr26:16,157,231...16,224,028
Ensembl chr26:16,159,025...16,184,820
JBrowse link
G RAC1 Rac family small GTPase 1 ISO (PMID:8625410)
(PMID:23129259)
CAFA
UniProtKB
PMID:8625410 PMID:23129259 NCBI chr 6:11,726,259...11,758,532
Ensembl chr 6:11,655,494...11,757,216
JBrowse link
G RAPGEF3 Rap guanine nucleotide exchange factor 3 IEA Ensembl GO_REF:0000107 NCBI chr27:6,993,452...7,030,372
Ensembl chr27:6,993,452...7,017,316
JBrowse link
G RGCC regulator of cell cycle ISO (PMID:19158077) BHF-UCL PMID:19158077 NCBI chr22:9,199,204...9,209,297 JBrowse link
G RHOA ras homolog family member A IEA Ensembl GO_REF:0000107 NCBI chr20:39,824,552...39,888,089
Ensembl chr20:39,824,575...39,887,215
JBrowse link
G RHOC ras homolog family member C ISO (PMID:20232393) BHF-UCL PMID:20232393 NCBI chr17:62,868,373...62,872,322 JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr17:7,931,786...8,012,484
Ensembl chr17:7,934,739...8,178,707
JBrowse link
G S100A10 S100 calcium binding protein A10 ISO (PMID:23129259) UniProtKB PMID:23129259 NCBI chr17:60,984,138...60,994,915 JBrowse link
G SDC4 syndecan 4 ISO RGD PMID:10504291 RGD:2312327 NCBI chr24:32,628,704...32,648,809
Ensembl chr24:32,630,437...32,649,114
JBrowse link
G SERPINF2 serpin family F member 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:45,876,076...45,883,777
Ensembl chr 9:45,877,495...45,883,036
JBrowse link
G SH3PXD2B SH3 and PX domains 2B IEA Ensembl GO_REF:0000107 NCBI chr 4:39,854,213...39,950,704
Ensembl chr 4:39,854,211...39,949,958
JBrowse link
G SMAD3 SMAD family member 3 ISO during transdifferentiation RGD PMID:15987742 RGD:2300418 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
JBrowse link
G SORBS3 sorbin and SH3 domain containing 3 ISO (PMID:9885244) UniProtKB PMID:9885244 NCBI chr25:34,701,495...34,725,231
Ensembl chr25:34,702,238...34,709,811
JBrowse link
G SYNPO2L synaptopodin 2 like ISO (MGI:6102963|PMID:29206857) BHF-UCL PMID:29206857 MGI:6102963 NCBI chr 4:24,168,030...24,177,710
Ensembl chr 4:24,169,707...24,177,813
JBrowse link
G TAC1 tachykinin precursor 1 ISO RGD PMID:17435548 RGD:2304338 NCBI chr14:22,631,106...22,640,283
Ensembl chr14:22,632,642...22,640,258
JBrowse link
G TACR1 tachykinin receptor 1 ISO RGD PMID:17435548 RGD:2304338 NCBI chr17:48,038,010...48,178,971
Ensembl chr17:48,038,010...48,178,971
JBrowse link
G TESK1 testis associated actin remodelling kinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:52,166,049...52,170,611
Ensembl chr11:52,166,276...52,170,309
JBrowse link
G TGFB3 transforming growth factor beta 3 IEA Ensembl GO_REF:0000107 NCBI chr 8:48,920,874...48,946,037
Ensembl chr 8:48,923,423...48,945,816
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr11:56,191,383...56,223,042
Ensembl chr11:56,161,772...56,218,594
JBrowse link
G TPM1 tropomyosin 1 ISO PMID:15897890 BHF-UCL PMID:15897890 RGD:8656006 NCBI chr30:27,636,407...27,664,907
Ensembl chr30:27,636,283...27,664,442
JBrowse link
G TSC1 TSC complex subunit 1 ISO RGD PMID:15611338 RGD:1601406 NCBI chr 9:51,409,307...51,459,546
Ensembl chr 9:51,425,937...51,454,677
JBrowse link
G WNT11 Wnt family member 11 IEA Ensembl GO_REF:0000107 NCBI chr21:22,442,496...22,463,040
Ensembl chr21:22,446,051...22,463,173
JBrowse link
G WNT4 Wnt family member 4 IEA Ensembl GO_REF:0000107 NCBI chr 2:77,112,045...77,129,702
Ensembl chr 2:77,101,300...77,127,111
JBrowse link
regulation of actin filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FLNA filamin A ISO (MGI:4838360|PMID:20713593) UniProt PMID:20713593 MGI:4838360 NCBI chr  X:122,058,303...122,083,467
Ensembl chr  X:122,061,455...122,083,203
JBrowse link
G RDX radixin IEA Ensembl GO_REF:0000107 NCBI chr 5:22,555,913...22,642,822
Ensembl chr 5:22,571,286...22,642,811
JBrowse link
regulation of stress fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTG1 actin gamma 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:635,978...638,328
Ensembl chr 9:635,978...638,328
JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr17:49,301,397...49,513,729
Ensembl chr17:49,301,606...49,513,625
JBrowse link
G ASAP3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 ISO (PMID:18400762) UniProtKB PMID:18400762 NCBI chr 2:75,944,774...75,992,586 JBrowse link
G BBS4 Bardet-Biedl syndrome 4 ISO (MGI:5510934|PMID:23716571) MGI PMID:23716571 MGI:5510934 NCBI chr30:36,058,932...36,109,206
Ensembl chr30:35,927,233...36,108,381
JBrowse link
G CDC42 cell division cycle 42 ISO (PMID:8625410) CAFA PMID:8625410 NCBI chr 2:77,153,276...77,169,947
Ensembl chr 2:77,153,095...77,199,211
JBrowse link
G FHOD1 formin homology 2 domain containing 1 IEA InterPro GO_REF:0000002 NCBI chr 5:82,129,846...82,145,605
Ensembl chr 5:82,129,965...82,145,604
JBrowse link
G MKKS McKusick-Kaufman syndrome IEA Ensembl GO_REF:0000107 NCBI chr24:11,887,504...11,914,055
Ensembl chr24:11,898,236...11,913,740
JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:53,447,802...53,527,563
Ensembl chr 2:53,448,286...53,524,970
JBrowse link
G PIK3R2 phosphoinositide-3-kinase regulatory subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr20:44,826,037...44,838,449
Ensembl chr20:44,826,339...44,836,558
JBrowse link
G PTGER4 prostaglandin E receptor 4 IEA Ensembl GO_REF:0000107 NCBI chr 4:68,663,362...68,676,241
Ensembl chr 4:68,663,364...68,676,358
JBrowse link
G RAC1 Rac family small GTPase 1 ISO (PMID:8625410) CAFA PMID:8625410 NCBI chr 6:11,726,259...11,758,532
Ensembl chr 6:11,655,494...11,757,216
JBrowse link
G SYNPO synaptopodin ISO (MGI:3577135|PMID:15841212) UniProt PMID:15841212 MGI:3577135 NCBI chr 4:58,501,361...58,549,340
Ensembl chr 4:58,497,734...58,550,438
JBrowse link
G TSC1 TSC complex subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:51,409,307...51,459,546
Ensembl chr 9:51,425,937...51,454,677
JBrowse link
G TTC8 tetratricopeptide repeat domain 8 IEA Ensembl GO_REF:0000107 NCBI chr 8:60,061,670...60,115,464
Ensembl chr 8:60,061,732...60,115,075
JBrowse link
G WAS WASP actin nucleation promoting factor ISO (PMID:8625410) CAFA PMID:8625410 NCBI chr  X:41,882,240...41,890,053
Ensembl chr  X:41,882,875...41,890,058
JBrowse link
stress fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARRB1 arrestin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr21:23,261,020...23,304,448
Ensembl chr21:23,235,711...23,297,786
JBrowse link
G CUL3 cullin 3 IEA Ensembl GO_REF:0000107 NCBI chr25:37,730,903...37,819,851
Ensembl chr25:37,733,229...37,800,886
JBrowse link
G ELN elastin IEA Ensembl GO_REF:0000107 NCBI chr 6:6,299,524...6,331,425
Ensembl chr 6:6,300,727...6,331,325
JBrowse link
G FAM171A1 family with sequence similarity 171 member A1 IEA Ensembl GO_REF:0000107 NCBI chr 2:21,445,602...21,505,564
Ensembl chr 2:21,445,726...21,504,249
JBrowse link
G FHDC1 FH2 domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr15:50,775,989...50,818,188
Ensembl chr15:50,775,431...50,815,844
JBrowse link
G ITGB1 integrin subunit beta 1 NOT ISO (PMID:24036928)
(MGI:5582864|PMID:24036928)
UniProtKB
UniProt
PMID:24036928 MGI:5582864 NCBI chr 2:3,728,472...3,757,696
Ensembl chr 2:3,670,596...3,756,961
JBrowse link
G ITGB5 integrin subunit beta 5 IEA Ensembl GO_REF:0000107 NCBI chr33:27,797,204...27,912,558
Ensembl chr33:27,797,667...27,912,584
JBrowse link
G KCTD13 potassium channel tetramerization domain containing 13 IEA Ensembl GO_REF:0000107 NCBI chr 6:17,945,541...17,959,421
Ensembl chr 6:17,946,062...17,959,232
JBrowse link
G PDCD10 programmed cell death 10 NOT ISO (PMID:20332113) UniProtKB PMID:20332113 NCBI chr34:32,512,109...32,553,524
Ensembl chr34:32,512,112...32,553,445
JBrowse link
G PDLIM1 PDZ and LIM domain 1 ISO PMID:22659164 UniProt PMID:22659164 RGD:13432282 NCBI chr28:8,770,882...8,817,828
Ensembl chr28:8,771,186...8,801,354
JBrowse link
G PHACTR1 phosphatase and actin regulator 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr35:12,233,152...12,745,031
Ensembl chr35:12,491,067...12,741,754
JBrowse link
G PTK2B protein tyrosine kinase 2 beta ISO RGD PMID:11739395 RGD:70597 NCBI chr25:30,137,546...30,264,221
Ensembl chr25:30,138,209...30,264,133
JBrowse link
G RHOA ras homolog family member A ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr20:39,824,552...39,888,089
Ensembl chr20:39,824,575...39,887,215
JBrowse link
G SORBS1 sorbin and SH3 domain containing 1 ISO (MGI:1196128|PMID:9461600) UniProt PMID:9461600 MGI:1196128 NCBI chr28:8,834,530...9,063,739
Ensembl chr28:8,837,338...9,063,777
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase IEA Ensembl GO_REF:0000107 NCBI chr24:25,982,499...26,019,748
Ensembl chr24:25,999,048...26,018,077
JBrowse link
G SRF serum response factor IEA Ensembl GO_REF:0000107 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533
JBrowse link
G TNFAIP1 TNF alpha induced protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:42,588,009...42,597,961
Ensembl chr 9:42,588,112...42,595,596
JBrowse link
G ZYX zyxin IEA Ensembl GO_REF:0000107 NCBI chr16:6,304,163...6,313,923 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16186
    cellular process 15465
      cellular component organization or biogenesis 6053
        cellular component organization 5885
          cellular component assembly 2738
            actin filament bundle assembly 174
              actin rod assembly 2
              actomyosin contractile ring actin filament bundle assembly + 0
              contractile actin filament bundle assembly + 109
              negative regulation of actin filament bundle assembly + 33
              parallel actin filament bundle assembly + 7
              positive regulation of actin filament bundle assembly + 68
              regulation of actin filament bundle assembly + 108
Path 2
Term Annotations click to browse term
  biological_process 16186
    cellular process 15465
      cellular component organization or biogenesis 6053
        cellular component organization 5885
          organelle organization 3732
            cytoskeleton organization 1401
              actin cytoskeleton organization 718
                actin filament organization 450
                  actin filament bundle organization 177
                    actin filament bundle assembly 174
                      actin rod assembly 2
                      actomyosin contractile ring actin filament bundle assembly + 0
                      contractile actin filament bundle assembly + 109
                      negative regulation of actin filament bundle assembly + 33
                      parallel actin filament bundle assembly + 7
                      positive regulation of actin filament bundle assembly + 68
                      regulation of actin filament bundle assembly + 108
paths to the root