ONTOLOGY REPORT - ANNOTATIONS
Term: sensory perception of light stimulus
Accession: GO:0050953
browse the term
Definition: The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
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Adgrv1
adhesion G protein-coupled receptor V1
involved_in
ISO
(PMID:14740321), (PMID:15671307)
RGD
PMID:14740321 PMID:15671307
NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
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Cdh23
cadherin-related 23
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:16679490) MGI:1856228 (PMID:14609561)
Ensembl RGD
PMID:14609561 PMID:16679490
GO_REF:0000107
NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
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Clrn1
clarin 1
involved_in
ISO IEA
(PMID:15521980) GO_REF:0000107
RGD Ensembl
PMID:15521980
GO_REF:0000107
NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948
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Grm6
glutamate metabotropic receptor 6
involved_in
ISO
(PMID:10842024)
RGD
PMID:10842024
NCBI chr10:35,167,985...35,182,717
Ensembl chr10:35,167,985...35,182,717
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Myo7a
myosin VIIA
involved_in acts_upstream_of_or_within
ISO
(PMID:11398101) MGI:2155422 (PMID:14609561)
RGD
PMID:11398101 PMID:14609561
NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
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Pcdh15
protocadherin related 15
involved_in
ISO
(PMID:11398101)
RGD
PMID:11398101
NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
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Pde6c
phosphodiesterase 6C
acts_upstream_of_or_within
ISO
MGI:2657247 (PMID:16723493)
RGD
PMID:16723493
NCBI chr 1:235,909,583...235,965,435
Ensembl chr 1:235,909,775...235,965,315
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Rho
rhodopsin
acts_upstream_of_or_within
ISO
MGI:2181812 (PMID:16723493)
RGD
PMID:16723493
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
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Ush1c
USH1 protein network component harmonin
involved_in
ISO
(PMID:11398101)
RGD
PMID:11398101
NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
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Ush1g
USH1 protein network component sans
involved_in
ISO
(PMID:11398101)
RGD
PMID:11398101
NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
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Ush2a
usherin
involved_in
ISO IEA
(PMID:10090909) GO_REF:0000107
RGD Ensembl
PMID:10090909
GO_REF:0000107
NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
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Whrn
whirlin
involved_in
IEA ISO
GO_REF:0000107 (PMID:17171570)
Ensembl RGD
PMID:17171570
GO_REF:0000107
NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
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Atp8a2
ATPase phospholipid transporting 8A2
involved_in
ISO
(PMID:24413176)
RGD
PMID:24413176
NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223
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Best1
bestrophin 1
acts_upstream_of_or_within
ISO
MGI:3795281 (PMID:16636205)
RGD
PMID:16636205
NCBI chr 1:206,629,340...206,646,085
Ensembl chr 1:206,629,500...206,646,063
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Cacna1f
calcium voltage-gated channel subunit alpha1 F
involved_in
ISO
(PMID:7571473)
RGD
PMID:7571473
NCBI chr X:14,868,096...14,896,413
Ensembl chr X:14,868,024...14,896,413
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Cacna2d4
calcium voltage-gated channel auxiliary subunit alpha2delta 4
involved_in
ISO
(PMID:17033974)
RGD
PMID:17033974
NCBI chr 4:152,408,588...152,521,478
Ensembl chr 4:152,408,657...152,521,268
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Cacnb4
calcium voltage-gated channel auxiliary subunit beta 4
acts_upstream_of_or_within
ISO
MGI:1856936 (PMID:16636205)
RGD
PMID:16636205
NCBI chr 3:36,906,771...37,169,165
Ensembl chr 3:36,910,427...37,168,944
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Ccdc66
coiled-coil domain containing 66
involved_in
ISO
(PMID:21680557)
RGD
PMID:21680557
NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023
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Cep250
centrosomal protein 250
involved_in
ISO
(PMID:30998843)
RGD
PMID:30998843
NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125
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Cngb1
cyclic nucleotide gated channel subunit beta 1
involved_in
ISO
(PMID:15557452)
RGD
PMID:15557452
NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
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Crb1
crumbs cell polarity complex component 1
acts_upstream_of_or_within
ISO
(PMID:22447858)
RGD
PMID:22447858
NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
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Gja10
gap junction protein, alpha 10
acts_upstream_of_or_within
ISO
MGI:3043946 (PMID:16820008)
RGD
PMID:16820008
NCBI chr 5:46,991,051...47,002,902
Ensembl chr 5:46,992,946...46,996,570
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Gnat1
G protein subunit alpha transducin 1
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:17584859) MGI:2152779 (PMID:18171936) GO_REF:0000033
RGD GO_Central
PMID:17584859 PMID:18171936
GO_REF:0000033
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
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Gnat2
G protein subunit alpha transducin 2
involved_in acts_upstream_of_or_within
ISO
(PMID:12077706) MGI:3588845 (PMID:17065522)
RGD
PMID:12077706 PMID:17065522
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
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Grm6
glutamate metabotropic receptor 6
involved_in
ISS ISO
GO_REF:0000024 (PMID:17405131)
UniProt RGD
PMID:17405131
GO_REF:0000024
NCBI chr10:35,167,985...35,182,717
Ensembl chr10:35,167,985...35,182,717
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Gucy2f
guanylate cyclase 2F
involved_in
ISO
(PMID:17255100)
RGD
PMID:17255100
NCBI chr X:105,710,356...105,808,183
Ensembl chr X:105,710,356...105,808,183
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Prph2
peripherin 2
acts_upstream_of_or_within
ISO
MGI:1856523|MGI:6367783|MGI:6367794|MGI:97998 (PMID:26420485), (PMID:28053051)
RGD
PMID:26420485 PMID:28053051
NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
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Rbp4
retinol binding protein 4
acts_upstream_of_or_within
ISO
MGI:2445721 (PMID:12484775)
RGD
PMID:12484775
NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
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Reep6
receptor accessory protein 6
involved_in
ISO ISS
(PMID:27889058) GO_REF:0000024
RGD UniProt
PMID:27889058
GO_REF:0000024
NCBI chr 7:9,373,927...9,380,845
Ensembl chr 7:9,373,927...9,380,597
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Rgs9bp
regulator of G protein signaling 9 binding protein
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:3028628 (PMID:14625292)
GO_Central RGD
PMID:14625292
GO_REF:0000033
NCBI chr 1:88,249,438...88,250,151
Ensembl chr 1:88,249,438...88,250,151
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Rom1
retinal outer segment membrane protein 1
acts_upstream_of_or_within
ISO
MGI:102791 (PMID:28053051)
RGD
PMID:28053051
NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
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Rpe65
retinoid isomerohydrolase RPE65
involved_in
ISO
(PMID:15557452)
RGD
PMID:15557452
NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
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Rpgrip1
RPGR interacting protein 1
involved_in
ISO
(PMID:21521437)
RGD
PMID:21521437
NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
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Sema5a
semaphorin 5A
acts_upstream_of_or_within
ISO
MGI:107555 (PMID:21835343)
RGD
PMID:21835343
NCBI chr 2:83,309,843...83,741,084
Ensembl chr 2:83,309,843...83,741,084
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Sema5b
semaphorin 5B
acts_upstream_of_or_within
ISO
MGI:107556 (PMID:21835343)
RGD
PMID:21835343
NCBI chr11:65,102,532...65,225,456
Ensembl chr11:65,102,031...65,225,311
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Tulp1
TUB like protein 1
involved_in
ISO
(PMID:15557452)
RGD
PMID:15557452
NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073
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Abca4
ATP binding cassette subfamily A member 4
acts_upstream_of_or_within
ISO
MGI:1857860 (PMID:10412977)
RGD
PMID:10412977
NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
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Adgrv1
adhesion G protein-coupled receptor V1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:3046273 (PMID:16775142)
GO_Central RGD
PMID:16775142
GO_REF:0000033
NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
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Arr3
arrestin 3
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr X:65,699,881...65,712,224
Ensembl chr X:65,698,699...65,712,153
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Arrb1
arrestin, beta 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:153,837,964...153,912,111
Ensembl chr 1:153,838,078...153,904,061
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Atf6
activating transcription factor 6
involved_in
ISO IEA
(PMID:26029869) GO_REF:0000107
RGD Ensembl
PMID:26029869
GO_REF:0000107
NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177
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Bbs10
Bardet-Biedl syndrome 10
acts_upstream_of_or_within
ISO
(PMID:36125046), (PMID:36700052)
RGD
PMID:36125046 PMID:36700052
NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141
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Bbs2
Bardet-Biedl syndrome 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:25541840)
UniProt RGD
PMID:25541840
GO_REF:0000024
NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993
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Bfsp2
beaded filament structural protein 2
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 8:104,006,226...104,063,399
Ensembl chr 8:104,006,226...104,063,399
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Cabp1
calcium binding protein 1
involved_in
ISS ISO IBA
GO_REF:0000024 (PMID:27822497) GO_REF:0000033
UniProt RGD GO_Central
PMID:27822497
GO_REF:0000024 GO_REF:0000033
NCBI chr12:41,385,234...41,448,930
Ensembl chr12:41,378,897...41,448,927
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Cabp2
calcium binding protein 2
involved_in
IBA ISO
GO_REF:0000033 (PMID:27822497)
GO_Central RGD
PMID:27822497
GO_REF:0000033
NCBI chr 1:201,374,649...201,380,469
Ensembl chr 1:201,375,276...201,380,469
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Cabp4
calcium binding protein 4
involved_in
ISO IBA
(PMID:16960802) GO_REF:0000033
RGD GO_Central
PMID:16960802
GO_REF:0000033
NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172
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Cacna1f
calcium voltage-gated channel subunit alpha1 F
involved_in acts_upstream_of_or_within
ISO
(PMID:16505158), (PMID:9662399), (PMID:9662400) MGI:3609549 (PMID:16155113)
RGD
PMID:9662399 PMID:9662400 PMID:16155113 PMID:16505158
NCBI chr X:14,868,096...14,896,413
Ensembl chr X:14,868,024...14,896,413
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Cacnb2
calcium voltage-gated channel auxiliary subunit beta 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2429694 (PMID:11980879)
Ensembl RGD
PMID:11980879
GO_REF:0000107
NCBI chr17:77,564,630...77,910,000
Ensembl chr17:77,564,460...77,909,106
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Cfh
complement factor H
involved_in acts_upstream_of_or_within
ISO
(PMID:17921253) (PMID:17517971), (PMID:25991857)
RGD
PMID:17517971 PMID:17921253 PMID:25991857
NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
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Chrnb2
cholinergic receptor nicotinic beta 2 subunit
acts_upstream_of_or_within
ISO
MGI:1926253 (PMID:11344259), (PMID:15456819)
RGD
PMID:11344259 PMID:15456819
NCBI chr 2:175,181,402...175,189,619
Ensembl chr 2:175,181,402...175,189,619
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Cldn19
claudin 19
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 5:132,862,939...132,870,364
Ensembl chr 5:132,863,267...132,868,227
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Clic5
chloride intracellular channel 5
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 9:16,710,980...16,813,502
Ensembl chr 9:16,710,980...16,813,427
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Cln5
CLN5, intracellular trafficking protein
acts_upstream_of_or_within
ISO
MGI:3521802 (PMID:15459177)
RGD
PMID:15459177
NCBI chr15:79,893,573...79,903,438
Ensembl chr15:79,893,548...79,903,438 Ensembl chr 2:79,893,548...79,903,438
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Cln6
CLN6, transmembrane ER protein
acts_upstream_of_or_within
ISO
MGI:2159328 (PMID:9600738)
RGD
PMID:9600738
NCBI chr 8:63,303,356...63,318,360
Ensembl chr 8:63,303,029...63,318,360
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Cln8
CLN8, transmembrane ER and ERGIC protein
acts_upstream_of_or_within
ISO
MGI:1856959 (PMID:7668363), (PMID:7683855), (PMID:8125718), (PMID:8282051)
RGD
PMID:7668363 PMID:7683855 PMID:8125718 PMID:8282051
NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
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Clrn1
clarin 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948
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Cnga1
cyclic nucleotide gated channel subunit alpha 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065
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Cngb1
cyclic nucleotide gated channel subunit beta 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
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Cnnm4
cyclin and CBS domain divalent metal cation transport mediator 4
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 9:38,711,726...38,750,942
Ensembl chr 9:38,711,710...38,750,942
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Col11a1
collagen type XI alpha 1 chain
involved_in
ISO
(PMID:10573014), (PMID:8872475)
RGD
PMID:8872475 PMID:10573014
NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
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Col1a1
collagen type I alpha 1 chain
involved_in
ISO
(PMID:17557158)
RGD
PMID:17557158
NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
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Col2a1
collagen type II alpha 1 chain
involved_in
ISO IEA
(PMID:10486316), (PMID:16752401) GO_REF:0000107
RGD Ensembl
PMID:10486316 PMID:16752401
GO_REF:0000107
NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
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Crb1
crumbs cell polarity complex component 1
involved_in acts_upstream_of_or_within
ISO
(PMID:12915475) (PMID:15316081)
RGD
PMID:12915475 PMID:15316081
NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
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Cryaa
crystallin, alpha A
involved_in
ISO
(PMID:14512969), (PMID:9467006)
RGD
PMID:9467006 PMID:14512969
NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
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Cryba1
crystallin, beta A1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726
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Cryba2
crystallin, beta A2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:76,447,250...76,457,968
Ensembl chr 9:76,447,251...76,450,460
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Cryba4
crystallin, beta A4
involved_in
ISO IBA
(PMID:16960806) GO_REF:0000033
RGD GO_Central
PMID:16960806
GO_REF:0000033
NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221
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Crybb1
crystallin, beta B1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:44,369,734...44,383,344
Ensembl chr12:44,369,735...44,383,344
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Crybb2
crystallin, beta B2
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1857342 (PMID:7363969)
GO_Central RGD
PMID:7363969
GO_REF:0000033
NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671
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Crybb3
crystallin, beta B3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:43,557,103...43,562,120
Ensembl chr12:43,557,103...43,562,120
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Crybg3
crystallin beta-gamma domain containing 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:40,749,198...40,861,753
Ensembl chr11:40,749,214...40,861,752
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Cryga
crystallin, gamma A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:66,482,176...66,484,638
Ensembl chr 9:66,482,176...66,509,896
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Crygb
crystallin, gamma B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520
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Crygc
crystallin, gamma C
involved_in
IEA ISO IBA
GO_REF:0000107 (PMID:12011157), (PMID:18618005) GO_REF:0000033
Ensembl RGD GO_Central
PMID:12011157 PMID:18618005
GO_REF:0000033 GO_REF:0000107
NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626
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Crygd
crystallin, gamma D
involved_in
ISO IBA
(PMID:12011157), (PMID:12676897), (PMID:9927684) GO_REF:0000033
RGD GO_Central
PMID:9927684 PMID:12011157 PMID:12676897
GO_REF:0000033
NCBI chr 9:66,442,057...66,443,668
Ensembl chr 9:66,442,054...66,444,067
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Cryge
crystallin, gamma E
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:66,429,924...66,432,521
Ensembl chr 9:66,429,924...66,433,274
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Crygf
crystallin, gamma F
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:67,448,265...67,450,429
Ensembl chr 9:67,447,954...67,450,429
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Crygn
crystallin, gamma N
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:10,394,015...10,401,542
Ensembl chr 4:10,394,020...10,401,543
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Crygs
crystallin, gamma S
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:78,207,170...78,212,273
Ensembl chr11:78,207,170...78,212,273
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Dnajc19
DnaJ heat shock protein family (Hsp40) member C19
involved_in
ISO
(PMID:16055927)
RGD
PMID:16055927
NCBI chr 2:116,923,272...116,945,312
Ensembl chr 2:116,923,272...116,945,264
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Dram2
DNA damage regulated autophagy modulator 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:25983245)
UniProt RGD
PMID:25983245
GO_REF:0000024
NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403
G
Elfn1
extracellular leucine-rich repeat and fibronectin type III domain containing 1
acts_upstream_of_or_within
ISO
(PMID:36179691)
RGD
PMID:36179691
NCBI chr12:14,660,049...14,725,709
Ensembl chr12:14,660,083...14,724,580
G
Epas1
endothelial PAS domain protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1861921 (PMID:15728559)
Ensembl RGD
PMID:15728559
GO_REF:0000107
NCBI chr 6:7,790,236...7,871,717
Ensembl chr 6:7,790,647...7,871,228
G
Gabrr2
gamma-aminobutyric acid type A receptor subunit rho 2
acts_upstream_of_or_within
ISO
MGI:2446461 (PMID:12019334)
RGD
PMID:12019334
NCBI chr 5:47,445,280...47,489,929
Ensembl chr 5:47,452,150...47,489,809
G
Gja3
gap junction protein, alpha 3
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr15:31,181,360...31,206,820
Ensembl chr15:31,181,369...31,206,810
G
Gjc1
gap junction protein, gamma 1
acts_upstream_of_or_within
ISO
MGI:2386124 (PMID:15659592)
RGD
PMID:15659592
NCBI chr10:87,758,192...87,785,443
Ensembl chr10:87,760,528...87,785,867
G
Gjd2
gap junction protein, delta 2
acts_upstream_of_or_within
ISO
MGI:2388389 (PMID:15659592)
RGD
PMID:15659592
NCBI chr 3:100,771,450...100,776,134
Ensembl chr 3:100,772,062...100,775,061
G
Glra1
glycine receptor, alpha 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3696673 (PMID:17114051)
Ensembl RGD
PMID:17114051
GO_REF:0000107
NCBI chr10:39,625,853...39,727,897
Ensembl chr10:39,629,459...39,727,162
G
Glrb
glycine receptor, beta
acts_upstream_of_or_within
ISO
MGI:1856363 (PMID:1338094)
RGD
PMID:1338094
NCBI chr 2:166,134,616...166,207,498
Ensembl chr 2:166,134,626...166,207,489
G
Gnat1
G protein subunit alpha transducin 1
acts_upstream_of_or_within
ISO
MGI:3707707|MGI:95779 (PMID:16603466), (PMID:30111842)
RGD
PMID:16603466 PMID:30111842
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
G
Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:3588845|MGI:5051274|MGI:95778 (PMID:17515894), (PMID:29518352), (PMID:30111842)
RGD
PMID:17515894 PMID:29518352 PMID:30111842
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Gnat3
G protein subunit alpha transducin 3
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 4:17,162,500...17,212,283
Ensembl chr 4:17,162,490...17,212,283
G
Gpr179
G protein-coupled receptor 179
involved_in
ISO
(PMID:22325362) (PMID:24114537), (PMID:33922602)
RGD
PMID:22325362 PMID:24114537 PMID:33922602
NCBI chr10:82,324,568...82,340,448
Ensembl chr10:82,337,771...82,340,448
G
Grk1
G protein-coupled receptor kinase 1
involved_in
IEA
GO_REF:0000002 GO_REF:0000043
InterPro UniProt
GO_REF:0000002 GO_REF:0000043
NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
G
Guca1a
guanylate cyclase activator 1A
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2664159 (PMID:11493703), (PMID:15173221)
GO_Central RGD
PMID:11493703 PMID:15173221
GO_REF:0000033
NCBI chr 9:13,588,988...13,598,566
Ensembl chr 9:13,588,525...13,598,565
G
Guca1b
guanylate cyclase activator 1B
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2664160 (PMID:11493703), (PMID:15173221)
GO_Central RGD
PMID:11493703 PMID:15173221
GO_REF:0000033
NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
G
Gucy2e
guanylate cyclase 2E
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr10:53,954,918...53,975,576
Ensembl chr10:53,959,010...53,974,067
G
Impg1
interphotoreceptor matrix proteoglycan 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 8:81,243,624...81,389,722
Ensembl chr 8:81,243,624...81,389,722
G
Impg2
interphotoreceptor matrix proteoglycan 2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr11:44,318,836...44,418,382
Ensembl chr11:44,318,836...44,418,382
G
Kcnj10
potassium inwardly-rectifying channel, subfamily J, member 10
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2182467 (PMID:10908613), (PMID:15359216)
Ensembl RGD
PMID:10908613 PMID:15359216
GO_REF:0000107
NCBI chr13:84,802,026...84,835,383
Ensembl chr13:84,802,009...84,835,461
G
Kcnk9
potassium two pore domain channel subfamily K member 9
involved_in
ISS ISO
GO_REF:0000024 (PMID:36070380)
UniProt RGD
PMID:36070380
GO_REF:0000024
NCBI chr 7:104,429,186...104,473,924
Ensembl chr 7:104,437,934...104,473,175
G
Lamb2
laminin subunit beta 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1344394 (PMID:19907020)
Ensembl RGD
PMID:19907020
GO_REF:0000107
NCBI chr 8:109,178,367...109,190,552
Ensembl chr 8:109,178,409...109,190,549
G
Lamc3
laminin subunit gamma 3
acts_upstream_of_or_within
ISO
MGI:99916 (PMID:19907020)
RGD
PMID:19907020
NCBI chr 3:15,165,220...15,226,697
Ensembl chr 3:15,165,220...15,226,697
G
Lrat
lecithin retinol acyltransferase
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
G
Lrit1
leucine-rich repeat, Ig-like and transmembrane domains 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr16:12,822,076...12,830,003
Ensembl chr16:12,822,076...12,831,772
G
Lrit3
leucine-rich repeat, Ig-like and transmembrane domains 3
acts_upstream_of_or_within
ISO
MGI:5629558 (PMID:24598786)
RGD
PMID:24598786
NCBI chr 2:218,337,215...218,360,318
Ensembl chr 2:218,337,819...218,357,307
G
Mfrp
membrane frizzled-related protein
acts_upstream_of_or_within
ISO
MGI:1888705 (PMID:12140190)
RGD
PMID:12140190
NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859
G
Mip
major intrinsic protein of lens fiber
acts_upstream_of_or_within
ISO
MGI:1861978 (PMID:11773604)
RGD
PMID:11773604
NCBI chr 7:643,502...653,121
Ensembl chr 7:647,315...654,400
G
Myo3a
myosin IIIA
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr17:84,543,465...84,759,562
Ensembl chr17:84,543,552...84,759,042
G
Myo3b
myosin IIIB
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 3:54,820,225...55,228,518
Ensembl chr 3:54,820,251...55,227,373
G
Myo5a
myosin VA
acts_upstream_of_or_within
ISO
MGI:1856005 (PMID:15316067)
RGD
PMID:15316067
NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
G
Myo7a
myosin VIIA
involved_in acts_upstream_of_or_within
ISO
(PMID:7870171) MGI:1857528|MGI:2155417|MGI:2155422|MGI:2155423|MGI:2182918|MGI:3045593 (PMID:11222540), (PMID:15316067)
RGD
PMID:7870171 PMID:11222540 PMID:15316067
NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
G
Ndufs4
NADH:ubiquinone oxidoreductase subunit S4
acts_upstream_of_or_within
ISO
MGI:3793713 (PMID:25652399)
RGD
PMID:25652399
NCBI chr 2:45,951,327...46,061,829
Ensembl chr 2:45,951,313...46,061,846
G
Nob1
NIN1 (RPN12) binding protein 1 homolog
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:22937111)
Ensembl RGD
PMID:22937111
GO_REF:0000107
NCBI chr19:35,322,803...35,335,354
Ensembl chr19:35,322,669...35,346,815
G
Nr2e1
nuclear receptor subfamily 2, group E, member 1
acts_upstream_of_or_within
ISO
MGI:2176560 (PMID:10706625), (PMID:16702404)
RGD
PMID:10706625 PMID:16702404
NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949
G
Nxnl2
nucleoredoxin-like 2
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:5426260 (PMID:22343139)
GO_Central RGD
PMID:22343139
GO_REF:0000033
NCBI chr17:14,031,151...14,035,897
Ensembl chr17:14,031,153...14,036,189
G
Nyx
nyctalopin
acts_upstream_of_or_within
ISO
MGI:2177945 (PMID:12506099), (PMID:15359216)
RGD
PMID:12506099 PMID:15359216
NCBI chr X:9,280,864...9,301,900
Ensembl chr X:9,280,864...9,301,900
G
Olfm2
olfactomedin 2
acts_upstream_of_or_within
ISO
(PMID:25218043)
RGD
PMID:25218043
NCBI chr 8:19,204,472...19,282,154
Ensembl chr 8:19,204,475...19,282,117
G
Opa1
OPA1, mitochondrial dynamin like GTPase
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:11017080)
ParkinsonsUK-UCL Ensembl RGD
PMID:11017080
GO_REF:0000024 GO_REF:0000107
NCBI chr11:71,108,100...71,185,170
Ensembl chr11:71,109,873...71,185,109
G
Opa3
outer mitochondrial membrane lipid metabolism regulator OPA3
involved_in
ISO
(PMID:15342707)
RGD
PMID:15342707
NCBI chr 1:78,879,612...78,910,453
Ensembl chr 1:78,880,114...78,901,469 Ensembl chr 1:78,880,114...78,901,469
G
Opn1mw
opsin 1, medium wave sensitive
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr X:151,905,056...151,925,419
Ensembl chr X:151,905,096...151,925,388
G
Opn1sw
opsin 1, short wave sensitive
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
G
Opn4
opsin 4
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
G
Opn5
opsin 5
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
G
Pcdh15
protocadherin related 15
acts_upstream_of_or_within
ISO
MGI:2448714 (PMID:16799054)
RGD
PMID:16799054
NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
G
Pdc
phosducin
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr13:62,297,281...62,371,754
Ensembl chr13:62,358,196...62,371,754
G
Pdcl
phosducin like
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000043 MGI:3576662|MGI:5516193 (PMID:23637185)
UniProt RGD
PMID:23637185
GO_REF:0000043
NCBI chr 3:21,110,165...21,119,763
Ensembl chr 3:21,110,167...21,119,715 Ensembl chr 3:21,110,167...21,119,715
G
Pde6c
phosphodiesterase 6C
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2657247 (PMID:22937111)
GO_Central RGD
PMID:22937111
GO_REF:0000033
NCBI chr 1:235,909,583...235,965,435
Ensembl chr 1:235,909,775...235,965,315
G
Pde6d
phosphodiesterase 6D
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 9:87,192,989...87,237,979
Ensembl chr 9:87,192,983...87,237,969
G
Pde6g
phosphodiesterase 6G
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr10:105,721,502...105,726,150
Ensembl chr10:105,721,682...105,726,719
G
Pde6h
phosphodiesterase 6H
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 4:169,857,793...169,872,969
Ensembl chr 4:169,857,812...169,872,969
G
Ppt1
palmitoyl-protein thioesterase 1
acts_upstream_of_or_within
ISO
MGI:3527191 (PMID:15649713)
RGD
PMID:15649713
NCBI chr 5:135,121,164...135,142,048
Ensembl chr 5:135,121,163...135,142,048
G
Rcvrn
recoverin
acts_upstream_of_or_within
ISO
MGI:3584102 (PMID:15173221)
RGD
PMID:15173221
NCBI chr10:52,388,706...52,396,454
Ensembl chr10:52,388,706...52,396,453
G
Rd3
RD3 regulator of GUCY2D
involved_in
ISO
(PMID:8486383)
RGD
PMID:8486383
NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
G
Rdh10
retinol dehydrogenase 10
acts_upstream_of_or_within
ISO
(PMID:12407145)
RGD
PMID:12407145
NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
G
Rdh11
retinol dehydrogenase 11
involved_in
ISO
(PMID:15790565)
RGD
PMID:15790565
NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
G
Rdh12
retinol dehydrogenase 12
involved_in
ISO
(PMID:12226107) (PMID:17032653)
RGD
PMID:12226107 PMID:17032653
NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388
G
Rdh8
retinol dehydrogenase 8
acts_upstream_of_or_within
ISO
MGI:3586327 (PMID:15755727)
RGD
PMID:15755727
NCBI chr 8:19,353,191...19,360,462
Ensembl chr 8:19,353,191...19,360,462
G
Rgr
retinal G protein coupled receptor
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223
G
Rgs9
regulator of G-protein signaling 9
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr10:94,195,265...94,270,892
Ensembl chr10:94,197,054...94,270,892
G
Rho
rhodopsin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2181812 (PMID:22937111)
Ensembl RGD
PMID:22937111
GO_REF:0000107
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
G
Rorb
RAR-related orphan receptor B
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Rp1
RP1, axonemal microtubule associated
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
G
Rp1l1
RP1 like 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316
G
Rpe65
retinoid isomerohydrolase RPE65
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
G
Rpgr
retinitis pigmentosa GTPase regulator
involved_in acts_upstream_of_or_within
ISO
(PMID:9399904) MGI:2386674 (PMID:12651948)
RGD
PMID:9399904 PMID:12651948
NCBI chr X:12,566,447...12,628,171
Ensembl chr X:12,566,645...12,747,882
G
Rpgrip1
RPGR interacting protein 1
acts_upstream_of_or_within
ISO
MGI:2655714 (PMID:12651948)
RGD
PMID:12651948
NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
G
Rrh
retinal pigment epithelium derived rhodopsin homolog
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 2:218,362,195...218,374,387
Ensembl chr 2:218,362,200...218,374,599
G
Rs1
retinoschisin 1
involved_in
ISO
(PMID:19093009)
RGD
PMID:19093009
NCBI chr X:33,962,440...33,992,203
Ensembl chr X:33,963,657...33,992,115
G
Slc24a1
solute carrier family 24 member 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 8:65,440,842...65,466,001
Ensembl chr 8:65,440,730...65,466,001
G
Slc38a8
solute carrier family 38, member 8
acts_upstream_of_or_within
ISO
(PMID:37862028)
RGD
PMID:37862028
NCBI chr19:47,522,781...47,561,443
Ensembl chr19:47,525,301...47,554,726
G
Slc4a10
solute carrier family 4 member 10
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:23056253) GO_REF:0000107
UniProt RGD Ensembl
PMID:23056253
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:46,665,076...46,959,088
Ensembl chr 3:46,665,265...46,957,268
G
Slc4a7
solute carrier family 4 member 7
acts_upstream_of_or_within
ISO
GO:0007601 (PMID:12808454)
RGD
PMID:12808454
NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781
G
Slitrk6
SLIT and NTRK-like family, member 6
acts_upstream_of_or_within
ISO
MGI:4417931 (PMID:23543054)
RGD
PMID:23543054
NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
G
Sox14
SRY-box transcription factor 14
acts_upstream_of_or_within
ISO
(PMID:22920256)
RGD
PMID:22920256
NCBI chr 8:100,421,982...100,423,918
Ensembl chr 8:100,421,982...100,423,918
G
Th
tyrosine hydroxylase
involved_in
ISO
(PMID:16445854)
RGD
PMID:16445854
NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
G
Trpm1
transient receptor potential cation channel, subfamily M, member 1
involved_in
ISO
(PMID:19878917)
RGD
PMID:19878917
NCBI chr 1:117,718,896...117,835,434
Ensembl chr 1:117,718,896...117,834,605
G
Unc119
unc-119 lipid binding chaperone
involved_in
IEA IBA
GO_REF:0000043 GO_REF:0000033
UniProt GO_Central
GO_REF:0000033 GO_REF:0000043
NCBI chr10:63,237,862...63,243,339
Ensembl chr10:63,237,903...63,243,339
G
Ush2a
usherin
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
G
Vsx1
visual system homeobox 1
acts_upstream_of_or_within
ISO
MGI:3040317 (PMID:15043821)
RGD
PMID:15043821
NCBI chr 3:139,514,270...139,521,869
Ensembl chr 3:139,514,270...139,521,869
G
Vsx2
visual system homeobox 2
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018
G
Wfs1
wolframin ER transmembrane glycoprotein
involved_in
ISO
(PMID:9771706), (PMID:9817917)
RGD
PMID:9771706 PMID:9817917
NCBI chr14:73,810,478...73,834,993
Ensembl chr14:73,810,404...73,835,602
G
Zic2
Zic family member 2
involved_in
ISO
(PMID:13678579), (PMID:20676059)
RGD
PMID:13678579 PMID:20676059
NCBI chr15:99,576,697...99,581,522
Ensembl chr15:99,576,697...99,581,522
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all