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ONTOLOGY REPORT - ANNOTATIONS


Term:pigment cell differentiation
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Accession:GO:0050931 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a pigmented cell, such as a melanocyte.
Comment:Note that the chromatophore mentioned here is distinct from the pigment bearing structure found in certain photosynthetic bacteria and cyanobacteria. It is also different from the plant chromoplast, which is also sometimes called a chromatophore.
Synonyms:exact_synonym: chromatophore differentiation;   pigmented cell differentiation
 alt_id: GO:0043357;   GO:0043358



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pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO
IEA
(MGI:5569478|PMID:21962903)
GO_REF:0000107
RGD
Ensembl
PMID:21962903 GO_REF:0000107 MGI:5569478 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (MGI:5607516|PMID:21187829) RGD PMID:21187829 MGI:5607516 NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr19:37,744,666...37,831,131
Ensembl chr19:37,744,633...37,829,167
JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:79,155,914...79,158,326
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17182842)
UniProt
RGD
PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Cd63 Cd63 molecule involved_in ISO
IEA
ISS
(PMID:21962903)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21962903 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within ISO MGI:1857344 (MGI:3505659|PMID:15205258) RGD PMID:15205258 MGI:3505659 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189
JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:104554|MGI:2156165|MGI:2158305 (MGI:2154874|PMID:11709185), (MGI:2180980|PMID:12086670), (MGI:81816|PMID:8758925)
Ensembl
RGD
PMID:8758925 PMID:11709185 PMID:12086670 GO_REF:0000107 MGI:2154874 MGI:2180980 MGI:81816 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in
acts_upstream_of_or_within
ISO
ISS
IBA
(PMID:8901575)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:8901575 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO (MGI:85072|PMID:9012511) RGD PMID:9012511 MGI:85072 NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IDA
ISO
MGI:1856148 (MGI:77000|PMID:2379821), (MGI:85072|PMID:9012511) RGD PMID:2379821 PMID:9012511 PMID:11709437 MGI:77000 MGI:85072, RGD:628459 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO
ISS
IEA
(PMID:28964717)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:28964717 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:3720956 (MGI:3796727|PMID:18397875) RGD PMID:18397875 MGI:3796727 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:2175993 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within ISO MGI:1856931 (MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:2175993 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
JBrowse link
G Hps6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856544 (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 1:244,853,256...244,855,865
Ensembl chr 1:244,853,194...244,855,883
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO (MGI:3612335|PMID:15768389) RGD PMID:15768389 MGI:3612335 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Lrmda leucine rich melanocyte differentiation associated involved_in ISO (PMID:23395477) RGD PMID:23395477 NCBI chr15:1,223,098...2,284,764
Ensembl chr15:1,225,710...2,284,749
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(MGI:5049797|PMID:21610032)
UniProt
RGD
PMID:21610032 GO_REF:0000024 MGI:5049797 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mitf melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
MGI:1856088|MGI:1856095|MGI:88138 (MGI:2180980|PMID:12086670), (MGI:77000|PMID:2379821)
Ensembl
RGD
PMID:2379821 PMID:12086670 PMID:21873635 GO_REF:0000107 MGI:2180980 MGI:77000, RGD:13792537 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (MGI:2149529|PMID:11504925), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:11504925 MGI:2149529 MGI:77000 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856847 (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:7828830 PMID:21873635 MGI:68866 MGI:77000, RGD:13792537 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (MGI:59447|PMID:1996138), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) RGD PMID:1996138 PMID:2379821 PMID:7828830 MGI:59447 MGI:68866 MGI:77000 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1856114 (MGI:77000|PMID:2379821)
PMID:21873635
RGD PMID:2379821 PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074
JBrowse link
G Olr59 olfactory receptor 59 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:27226631)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27226631 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:157,193,051...157,227,707
Ensembl chr 1:157,193,080...157,211,179
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:52947 MGI:77000 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:112,319,305...112,339,231
Ensembl chr 3:112,319,308...112,339,231
JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO MGI:3701358 (MGI:3701016|PMID:16790476) RGD PMID:16790476 MGI:3701016 NCBI chr 7:110,725,274...110,735,544
Ensembl chr 7:110,725,274...110,735,544
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1855962 (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO
ISS
(PMID:21962903)
GO_REF:0000024
RGD
UniProt
PMID:21962903 GO_REF:0000024 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:3766915 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158305 (MGI:3618415|PMID:16427619)
Ensembl
RGD
PMID:16427619 GO_REF:0000107 MGI:3618415 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (MGI:3618415|PMID:16427619) RGD PMID:16427619 MGI:3618415 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17182842)
UniProt
RGD
PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2682213 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 7:8,163,752...8,177,636
Ensembl chr 7:8,162,750...8,179,812
JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2681766 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 1:213,425,631...213,671,947
Ensembl chr 1:213,424,465...213,667,672
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19541
    pigmentation 101
      developmental pigmentation 51
        pigment cell differentiation 39
          compound eye pigment cell differentiation 0
          cyanophore differentiation + 0
          erythrophore differentiation + 1
          iridophore differentiation + 0
          leucophore differentiation + 0
          melanocyte differentiation + 29
          negative regulation of pigment cell differentiation + 0
          pigment cell development 0
          pigment granule maturation + 10
          positive regulation of pigment cell differentiation + 7
          regulation of pigment cell differentiation + 9
          xanthophore differentiation + 0
Path 2
Term Annotations click to browse term
  biological_process 19541
    cellular process 18407
      cellular developmental process 4576
        cell differentiation 4481
          pigment cell differentiation 39
            compound eye pigment cell differentiation 0
            cyanophore differentiation + 0
            erythrophore differentiation + 1
            iridophore differentiation + 0
            leucophore differentiation + 0
            melanocyte differentiation + 29
            negative regulation of pigment cell differentiation + 0
            pigment cell development 0
            pigment granule maturation + 10
            positive regulation of pigment cell differentiation + 7
            regulation of pigment cell differentiation + 9
            xanthophore differentiation + 0
paths to the root