Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:pigment cell differentiation
go back to main search page
Accession:GO:0050931 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a pigmented cell, such as a melanocyte.
Comment:Note that the chromatophore mentioned here is distinct from the pigment bearing structure found in certain photosynthetic bacteria and cyanobacteria. It is also different from the plant chromoplast, which is also sometimes called a chromatophore.
Synonyms:exact_synonym: chromatophore differentiation;   pigmented cell differentiation
 alt_id: GO:0043357;   GO:0043358


show annotations for term's descendants           Sort by:
 
pigment cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule ISO (MGI:MGI:5569478|PMID:21962903) RGD PMID:21962903 MGI:MGI:5569478 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 ISO (MGI:MGI:5607516|PMID:21187829) RGD PMID:21187829 MGI:MGI:5607516 NCBI chr 1:91,857,048...91,958,763
Ensembl chr 1:91,857,057...91,958,763
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 ISO (PMID:22511774) RGD PMID:22511774 NCBI chr19:41,805,252...41,860,076 JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 ISO (PMID:19841138) RGD PMID:19841138 NCBI chr16:19,288,354...19,303,818
Ensembl chr16:19,288,355...19,303,824
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO
ISS
(PMID:17182842)
GO_REF:0000024
RGD
UniProt
PMID:17182842 GO_REF:0000024 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Cd63 Cd63 molecule IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21962903)
Ensembl
UniProt
RGD
PMID:21962903 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
G Rab32 RAB32, member RAS oncogene family ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:4,638,663...4,653,220
Ensembl chr 1:4,637,491...4,653,210
JBrowse link
G Rab38 RAB38, member RAS oncogene family ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
erythrophore differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sod2 superoxide dismutase 2 ISO MGI:MGI:1857344 (MGI:MGI:3505659|PMID:15205258) RGD PMID:15205258 MGI:MGI:3505659 NCBI chr 1:47,914,757...47,921,587
Ensembl chr 1:47,914,759...47,921,587
JBrowse link
melanocyte differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator IEA
ISO
GO_REF:0000107
MGI:MGI:104554|MGI:MGI:2156165|MGI:MGI:2158305 (MGI:MGI:2154874|PMID:11709185), (MGI:MGI:2180980|PMID:12086670), (MGI:MGI:81816|PMID:8758925)
Ensembl
RGD
PMID:8758925, PMID:11709185, PMID:12086670 GO_REF:0000107, MGI:MGI:2154874, MGI:MGI:2180980, MGI:MGI:81816 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO MGI:MGI:1856982 (MGI:MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:MGI:77000 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 ISO
IBA
ISS
(PMID:8901575)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:8901575, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:72,128,996...72,133,692
Ensembl chr  X:72,128,994...72,133,692
JBrowse link
G Edn3 endothelin 3 ISO (MGI:MGI:85072|PMID:9012511) RGD PMID:9012511 MGI:MGI:85072 NCBI chr 3:172,856,730...172,879,276
Ensembl chr 3:172,856,733...172,880,450
JBrowse link
G Ednrb endothelin receptor type B IDA
ISO
MGI:MGI:1856148 (MGI:MGI:77000|PMID:2379821), (MGI:MGI:85072|PMID:9012511) RGD PMID:2379821, PMID:9012511, PMID:11709437 MGI:MGI:77000, MGI:MGI:85072, RGD:628459 NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISS
ISO
IEA
GO_REF:0000024
(PMID:28964717)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28964717 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:3720956 (MGI:MGI:3796727|PMID:18397875) RGD PMID:18397875 MGI:MGI:3796727 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 ISO MGI:MGI:1856712 (MGI:MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:MGI:2175993 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 ISO MGI:MGI:1856931 (MGI:MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:MGI:2175993 NCBI chr12:50,285,239...50,315,893
Ensembl chr12:50,285,278...50,314,406
JBrowse link
G Hps6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 ISO
IBA
MGI:MGI:1856544 (MGI:MGI:77000|PMID:2379821)
PMID:21873635
RGD PMID:2379821, PMID:21873635 MGI:MGI:77000, RGD:13792537 NCBI chr 1:265,761,818...265,764,427
Ensembl chr 1:265,761,738...265,764,437
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase ISO (MGI:MGI:3612335|PMID:15768389) RGD PMID:15768389 MGI:MGI:3612335 NCBI chr14:35,072,131...35,149,638
Ensembl chr14:35,072,108...35,149,610
JBrowse link
G Lrmda leucine rich melanocyte differentiation associated ISO (PMID:23395477) RGD PMID:23395477 NCBI chr15:1,269,869...2,346,246 JBrowse link
G Mef2c myocyte enhancer factor 2C IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5049797|PMID:21610032)
Ensembl
UniProt
RGD
PMID:21610032 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5049797 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mitf melanocyte inducing transcription factor ISO
IBA
MGI:MGI:1856088|MGI:MGI:1856095|MGI:MGI:88138 (MGI:MGI:2180980|PMID:12086670), (MGI:MGI:77000|PMID:2379821)
PMID:21873635
RGD PMID:2379821, PMID:12086670, PMID:21873635 MGI:MGI:2180980, MGI:MGI:77000, RGD:13792537 NCBI chr 4:130,172,484...130,425,496
Ensembl chr 4:130,172,727...130,425,532
JBrowse link
G Mlph melanophilin ISO MGI:MGI:1856674 (MGI:MGI:2149529|PMID:11504925), (MGI:MGI:77000|PMID:2379821) RGD PMID:2379821, PMID:11504925 MGI:MGI:2149529, MGI:MGI:77000 NCBI chr 9:98,072,965...98,108,429
Ensembl chr 9:98,073,038...98,108,433
JBrowse link
G Mreg melanoregulin ISO
IBA
MGI:MGI:1856847 (MGI:MGI:68866|PMID:7828830), (MGI:MGI:77000|PMID:2379821)
PMID:21873635
RGD PMID:2379821, PMID:7828830, PMID:21873635 MGI:MGI:68866, MGI:MGI:77000, RGD:13792537 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myo5a myosin VA ISO
IEA
MGI:MGI:1856004 (MGI:MGI:59447|PMID:1996138), (MGI:MGI:68866|PMID:7828830), (MGI:MGI:77000|PMID:2379821)
GO_REF:0000107
RGD
Ensembl
PMID:1996138, PMID:2379821, PMID:7828830 GO_REF:0000107, MGI:MGI:59447, MGI:MGI:68866, MGI:MGI:77000 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein ISO MGI:MGI:1856114 (MGI:MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:MGI:77000 NCBI chr 1:114,661,970...114,987,433
Ensembl chr 1:114,679,537...114,987,433
JBrowse link
G Olr59 olfactory receptor 59 ISS
ISO
IEA
GO_REF:0000024
(PMID:27226631)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27226631 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:167,906,030...167,940,688
Ensembl chr 1:167,906,061...167,911,961
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO MGI:MGI:1856656 (MGI:MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:MGI:52947, MGI:MGI:77000 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Slc24a5 solute carrier family 24 member 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:117,335,212...117,354,480
Ensembl chr 3:117,335,212...117,354,480
JBrowse link
G Sox10 SRY-box transcription factor 10 ISO MGI:MGI:3701358 (MGI:MGI:3701016|PMID:16790476) RGD PMID:16790476 MGI:MGI:3701016 NCBI chr 7:120,393,238...120,403,523
Ensembl chr 7:120,393,254...120,403,523
JBrowse link
G Tyrp1 tyrosinase-related protein 1 ISO
IBA
MGI:MGI:1855962 (MGI:MGI:77000|PMID:2379821)
PMID:21873635
RGD PMID:2379821, PMID:21873635 MGI:MGI:77000, RGD:13792537 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
pigment granule maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule ISO
ISS
(PMID:21962903)
GO_REF:0000024
RGD
UniProt
PMID:21962903 GO_REF:0000024 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 ISO MGI:MGI:1916320|MGI:MGI:3766915 (MGI:MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:MGI:3778519 NCBI chr 7:135,465,021...135,630,941
Ensembl chr 7:135,466,884...135,630,654
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 ISO MGI:MGI:2660628 (MGI:MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:MGI:3778519 NCBI chr 4:124,660,254...124,860,997
Ensembl chr 4:124,660,262...124,858,250
JBrowse link
G Bcl2 BCL2, apoptosis regulator ISO
IEA
MGI:MGI:2158305 (MGI:MGI:3618415|PMID:16427619)
GO_REF:0000107
RGD
Ensembl
PMID:16427619 GO_REF:0000107, MGI:MGI:3618415 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Kitlg KIT ligand ISO (MGI:MGI:3618415|PMID:16427619) RGD PMID:16427619 MGI:MGI:3618415 NCBI chr 7:42,269,784...42,351,054
Ensembl chr 7:42,269,784...42,351,054
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO (MGI:MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:MGI:5574413 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO
ISS
(PMID:17182842)
GO_REF:0000024
RGD
UniProt
PMID:17182842 GO_REF:0000024 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 ISO
IEA
MGI:MGI:2682213 (MGI:MGI:3055244|PMID:15322542)
GO_REF:0000107
RGD
Ensembl
PMID:15322542 GO_REF:0000107, MGI:MGI:3055244 NCBI chr 7:11,033,400...11,047,284
Ensembl chr 7:11,033,317...11,047,437
JBrowse link
G Gnaq G protein subunit alpha q ISO
IEA
MGI:MGI:2681766 (MGI:MGI:3055244|PMID:15322542)
GO_REF:0000107
RGD
Ensembl
PMID:15322542 GO_REF:0000107, MGI:MGI:3055244 NCBI chr 1:233,382,778...233,622,584
Ensembl chr 1:233,382,708...233,622,786
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    pigmentation 99
      developmental pigmentation 51
        pigment cell differentiation 39
          compound eye pigment cell differentiation 0
          cyanophore differentiation + 0
          erythrophore differentiation + 1
          iridophore differentiation + 0
          leucophore differentiation + 0
          melanocyte differentiation + 29
          negative regulation of pigment cell differentiation + 0
          pigment cell development 0
          pigment granule maturation + 10
          positive regulation of pigment cell differentiation + 7
          regulation of pigment cell differentiation + 9
          xanthophore differentiation + 0
Path 2
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular developmental process 4459
        cell differentiation 4363
          pigment cell differentiation 39
            compound eye pigment cell differentiation 0
            cyanophore differentiation + 0
            erythrophore differentiation + 1
            iridophore differentiation + 0
            leucophore differentiation + 0
            melanocyte differentiation + 29
            negative regulation of pigment cell differentiation + 0
            pigment cell development 0
            pigment granule maturation + 10
            positive regulation of pigment cell differentiation + 7
            regulation of pigment cell differentiation + 9
            xanthophore differentiation + 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.