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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix binding
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Accession:GO:0050840 term browser browse the term
Definition:Binding to a component of the extracellular matrix.
Synonyms:exact_synonym: extracellular matrix constituent binding
 related_synonym: adhesive extracellular matrix constituent



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extracellular matrix binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 enables ISO (MGI:5554640|PMID:24220035) RGD PMID:24220035 MGI:5554640 NCBI chr 8:29,307,864...29,331,249
Ensembl chr 8:29,307,865...29,331,249
JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 enables ISO (MGI:5554640|PMID:24220035) RGD PMID:24220035 MGI:5554640 NCBI chr11:25,000,627...25,047,205
Ensembl chr11:25,000,637...25,047,205
JBrowse link
G Adgrg1 adhesion G protein-coupled receptor G1 enables IEA
ISO
ISS
GO_REF:0000107
(MGI:3796260|PMID:18509043)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18509043 GO_REF:0000024 GO_REF:0000107 MGI:3796260 NCBI chr19:10,003,963...10,041,122
Ensembl chr19:10,003,975...10,041,108
JBrowse link
G Bgn biglycan enables ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr  X:151,197,296...151,209,458
Ensembl chr  X:151,197,273...151,209,461
JBrowse link
G Ccn1 cellular communication network factor 1 enables ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
JBrowse link
G Cd248 CD248 molecule enables IBA
ISO
PMID:21873635
(MGI:5444586|PMID:22740442)
RGD PMID:22740442 PMID:21873635 MGI:5444586, RGD:13792537 NCBI chr 1:202,373,676...202,376,240
Ensembl chr 1:202,373,676...202,376,240
JBrowse link
G Clec14a C-type lectin domain containing 14A enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:75,881,470...75,884,612
Ensembl chr 6:75,881,473...75,884,612
JBrowse link
G Dcn decorin enables ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 7:32,281,252...32,321,291
Ensembl chr 7:32,281,252...32,321,270
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:185,617,469...185,696,476
Ensembl chr 1:185,617,294...185,696,478
JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 enables ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr14:5,528,441...5,542,078
Ensembl chr14:5,528,431...5,539,323
JBrowse link
G Eln elastin enables IEA
ISO
GO_REF:0000107
(MGI:3807344|PMID:18757743)
Ensembl
RGD
PMID:18757743 GO_REF:0000107 MGI:3807344 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928
JBrowse link
G Fbln2 fibulin 2 enables IBA
ISO
PMID:21873635
(MGI:3807344|PMID:18757743)
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr 4:123,704,289...123,763,857
Ensembl chr 4:123,704,373...123,763,948
JBrowse link
G Itga2b integrin subunit alpha 2b enables ISO (MGI:3051967|PMID:15031111) RGD PMID:15031111 MGI:3051967 NCBI chr10:87,408,532...87,426,055
Ensembl chr10:87,408,536...87,426,168
JBrowse link
G Itgav integrin subunit alpha V enables ISO (PMID:22505472) RGD PMID:22505472 NCBI chr 3:68,838,524...68,926,653
Ensembl chr 3:68,838,189...68,926,639
JBrowse link
G Itgb3 integrin subunit beta 3 enables ISO
IEA
(PMID:22505472)
GO_REF:0000107
RGD
Ensembl
PMID:22505472 GO_REF:0000107 NCBI chr10:89,509,917...89,564,679
Ensembl chr10:89,509,989...89,564,679
JBrowse link
G Nid1 nidogen 1 enables ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr17:86,085,046...86,158,277
Ensembl chr17:86,085,077...86,158,267
JBrowse link
G Olfml2a olfactomedin-like 2A enables ISO (MGI:3696893|PMID:15836428) RGD PMID:15836428 MGI:3696893 NCBI chr 3:22,688,562...22,717,745
Ensembl chr 3:22,688,598...22,717,909
JBrowse link
G Olfml2b olfactomedin-like 2B enables ISO (MGI:3696893|PMID:15836428) RGD PMID:15836428 MGI:3696893 NCBI chr13:82,869,414...82,906,607
Ensembl chr13:82,869,433...82,906,607
JBrowse link
G Sdc1 syndecan 1 TAS RGD PMID:12135485 RGD:625750 NCBI chr 6:31,562,799...31,585,267
Ensembl chr 6:31,562,739...31,585,264
JBrowse link
G Smoc1 SPARC related modular calcium binding 1 enables ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr 6:100,701,330...100,897,441
Ensembl chr 6:100,701,346...100,862,699
JBrowse link
G Smoc2 SPARC related modular calcium binding 2 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:55,262,472...55,391,804
Ensembl chr 1:55,262,530...55,391,693
JBrowse link
G Sparc secreted protein acidic and cysteine rich enables IBA
ISO
PMID:21873635
(MGI:3807344|PMID:18757743)
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396
JBrowse link
G Sparcl1 SPARC like 1 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:5,632,816...5,663,866
Ensembl chr14:5,632,569...5,663,865
JBrowse link
G Spock2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 enables ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr20:28,036,909...28,064,272
Ensembl chr20:28,033,475...28,064,272
JBrowse link
G Spp1 secreted phosphoprotein 1 enables IBA
ISO
PMID:21873635
(MGI:3807344|PMID:18757743)
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr14:5,308,885...5,315,120
Ensembl chr14:5,308,885...5,315,162
JBrowse link
G Ssc5d scavenger receptor cysteine rich family member with 5 domains enables IBA
ISO
PMID:21873635
(MGI:4939978|PMID:21217009)
RGD PMID:21217009 PMID:21873635 MGI:4939978, RGD:13792537 NCBI chr 1:68,891,942...68,910,462
Ensembl chr 1:68,891,949...68,909,743
JBrowse link
G Tgfbi transforming growth factor, beta induced enables ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr17:7,955,603...7,984,903
Ensembl chr17:7,955,603...7,985,240
JBrowse link
G Thbs1 thrombospondin 1 enables ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 3:105,056,286...105,071,445
Ensembl chr 3:105,056,292...105,071,440
JBrowse link
G Thsd1 thrombospondin type 1 domain containing 1 enables ISO (PMID:27895300) RGD PMID:27895300 NCBI chr16:69,771,408...69,804,844
Ensembl chr16:69,771,408...69,801,504
JBrowse link
G Vegfa vascular endothelial growth factor A enables ISO (MGI:3758404|PMID:17626017) RGD PMID:17626017 MGI:3758404 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Vtn vitronectin enables ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810
JBrowse link
G Zan zonadhesin enables ISO (PMID:7592795) RGD PMID:7592795 NCBI chr12:19,215,018...19,322,789
Ensembl chr12:19,215,102...19,271,240
JBrowse link
bone sialoprotein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 IPI RGD PMID:23525114 RGD:12911212 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
laminin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase enables ISO
IEA
(PMID:12524166)
GO_REF:0000107
PR:P02469 (MGI:3056824|PMID:15474030)
RGD
Ensembl
PMID:12524166 PMID:15474030 GO_REF:0000107 MGI:3056824 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Adam9 ADAM metallopeptidase domain 9 enables ISO (PMID:15361064) RGD PMID:15361064 NCBI chr16:67,022,538...67,101,647
Ensembl chr16:67,022,655...67,100,917
JBrowse link
G Adgrg6 adhesion G protein-coupled receptor G6 enables ISO
IBA
(MGI:5629884|PMID:25695270)
PMID:21873635
RGD PMID:25695270 PMID:21873635 MGI:5629884, RGD:13792537 NCBI chr 1:8,812,889...8,954,239
Ensembl chr 1:8,812,904...8,954,123
JBrowse link
G Agrn agrin enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:166,749,306...166,782,212
Ensembl chr 5:166,749,310...166,786,003
JBrowse link
G Bcam basal cell adhesion molecule (Lutheran blood group) enables ISO (PMID:16236823) RGD PMID:16236823 NCBI chr 1:79,415,016...79,429,403
Ensembl chr 1:79,415,017...79,429,403
JBrowse link
G Ctss cathepsin S enables ISO (PMID:22952693) RGD PMID:22952693 NCBI chr 2:183,089,192...183,114,483
Ensembl chr 2:183,086,437...183,114,483
JBrowse link
G Dag1 dystroglycan 1 enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8996823 PMID:21873635 RGD:11541070, RGD:13792537 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325
JBrowse link
G Ecm1 extracellular matrix protein 1 enables ISO UniProtKB:Q13751 (PMID:19275936) RGD PMID:19275936 NCBI chr 2:183,287,491...183,292,729
Ensembl chr 2:183,287,322...183,292,671
JBrowse link
G Gpc1 glypican 1 enables ISS
ISO
IEA
GO_REF:0000024
(MGI:4461098|PMID:20100867)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20100867 GO_REF:0000024 GO_REF:0000107 MGI:4461098 NCBI chr 9:93,396,234...93,424,047
Ensembl chr 9:93,396,234...93,424,047
JBrowse link
G Itga2 integrin subunit alpha 2 IMP binding by rat pheochromocytoma cells RGD PMID:10082128 RGD:2307408 NCBI chr 2:46,520,345...46,621,487
Ensembl chr 2:46,523,948...46,621,481
JBrowse link
G Itga3 integrin subunit alpha 3 IMP
IDA
RGD PMID:2223092 PMID:1835909 RGD:2325828, RGD:2325829 NCBI chr10:79,990,160...80,022,206
Ensembl chr10:79,990,161...80,022,118
JBrowse link
G Itga6 integrin subunit alpha 6 IPI RGD PMID:16608848 RGD:1600017 NCBI chr 3:56,604,512...56,689,428
Ensembl chr 3:56,617,268...56,689,428
JBrowse link
G Itga7 integrin subunit alpha 7 contributes_to IDA
ISO
(MGI:5497986|PMID:1839357), (MGI:84972|PMID:9004048) RGD PMID:1839357 PMID:9004048 PMID:1315319 PMID:16282198 MGI:5497986 MGI:84972, RGD:70774, RGD:1600026 NCBI chr 7:1,360,125...1,388,886
Ensembl chr 7:1,359,940...1,388,450
JBrowse link
G Itga9 integrin subunit alpha 9 IDA RGD PMID:8020590 RGD:2317878 NCBI chr 8:118,307,424...118,615,527
Ensembl chr 8:118,307,381...118,613,754
JBrowse link
G Itgb1 integrin subunit beta 1 enables
contributes_to
IMP
IEA
ISO
IDA
GO_REF:0000107
(MGI:5497986|PMID:1839357)
Ensembl
RGD
PMID:1839357 PMID:18635166 PMID:1835909 GO_REF:0000107 MGI:5497986, RGD:2325290, RGD:2325829 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
JBrowse link
G Lgals1 galectin 1 enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:1955484 PMID:21873635 RGD:2316546, RGD:13792537 NCBI chr 7:110,485,239...110,488,345
Ensembl chr 7:110,481,392...110,488,345
JBrowse link
G Lgals3 galectin 3 enables ISO
IBA
(PMID:2402511)
PMID:21873635
RGD PMID:2402511 PMID:21873635 RGD:13792537 NCBI chr15:20,620,083...20,632,019
Ensembl chr15:20,607,692...20,632,025
JBrowse link
G Lrrc15 leucine rich repeat containing 15 enables ISO
IEA
(PMID:16098915)
GO_REF:0000107
RGD
Ensembl
PMID:16098915 GO_REF:0000107 NCBI chr11:70,469,775...70,484,268
Ensembl chr11:70,469,804...70,484,267
JBrowse link
G Lypd3 Ly6/Plaur domain containing 3 enables IDA PMID:15729693 MGI PMID:15729693 RGD:8553808 NCBI chr 1:80,226,449...80,230,901
Ensembl chr 1:80,226,449...80,230,901
JBrowse link
G Ncl nucleolin IDA RGD PMID:8583499 RGD:9686427 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136
JBrowse link
G Nid1 nidogen 1 enables ISO (PMID:22952693) RGD PMID:22952693 NCBI chr17:86,085,046...86,158,277
Ensembl chr17:86,085,077...86,158,267
JBrowse link
G Plekha2 pleckstrin homology domain containing A2 enables ISO (PMID:19786618) RGD PMID:19786618 NCBI chr16:66,938,684...67,000,661
Ensembl chr16:66,939,109...66,999,395
JBrowse link
G RGD1562885 similar to RIKEN cDNA 2300002M23 enables ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr20:3,172,330...3,173,886
Ensembl chr20:3,172,330...3,173,886
JBrowse link
G Rpsa ribosomal protein SA enables ISO (MGI:52489|PMID:8452943) RGD PMID:8452943 MGI:52489 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
JBrowse link
G Ssc5d scavenger receptor cysteine rich family member with 5 domains enables ISO (MGI:4939978|PMID:21217009) RGD PMID:21217009 MGI:4939978 NCBI chr 1:68,891,942...68,910,462
Ensembl chr 1:68,891,949...68,909,743
JBrowse link
G Thbs1 thrombospondin 1 enables ISO (PMID:6693501) RGD PMID:6693501 NCBI chr 3:105,056,286...105,071,445
Ensembl chr 3:105,056,292...105,071,440
JBrowse link
G Tinagl1 tubulointerstitial nephritis antigen-like 1 enables IEA
ISO
GO_REF:0000107
PR:P19137 (MGI:4397501|PMID:19587330)
Ensembl
RGD
PMID:19587330 GO_REF:0000107 MGI:4397501 NCBI chr 5:142,513,710...142,523,730
Ensembl chr 5:142,513,714...142,523,720
JBrowse link
laminin binding involved in cell-matrix adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 enables ISO MGI:3771315 (MGI:5824792|PMID:27553271) RGD PMID:27553271 MGI:5824792 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461
JBrowse link
laminin-1 binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dag1 dystroglycan 1 IDA RGD PMID:9153251 RGD:11541058 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325
JBrowse link
G Nid1 nidogen 1 enables IEA
ISO
GO_REF:0000107
(MGI:3721838|PMID:17517882)
Ensembl
RGD
PMID:17517882 GO_REF:0000107 MGI:3721838 NCBI chr17:86,085,046...86,158,277
Ensembl chr17:86,085,077...86,158,267
JBrowse link
G Ntn4 netrin 4 enables ISO (MGI:3722516|PMID:17588941) RGD PMID:17588941 MGI:3722516 NCBI chr 7:28,186,611...28,300,390
Ensembl chr 7:28,186,611...28,300,390
JBrowse link
G Pxdn peroxidasin enables ISO (PMID:32485152) RGD PMID:32485152 NCBI chr 6:46,580,749...46,658,345
Ensembl chr 6:46,580,761...46,658,345
JBrowse link
G Shh sonic hedgehog signaling molecule enables IEA
ISO
ISS
GO_REF:0000107
(MGI:3573843|PMID:15056720)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15056720 GO_REF:0000024 GO_REF:0000107 MGI:3573843 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Slit2 slit guidance ligand 2 enables ISO (PMID:10102268) RGD PMID:10102268 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948
JBrowse link
G Thbs4 thrombospondin 4 IDA RGD PMID:10956668 RGD:1580072 NCBI chr 2:23,983,158...24,025,289
Ensembl chr 2:23,983,158...24,026,313
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19541
    binding 16791
      extracellular matrix binding 63
        bone sialoprotein binding 1
        host cell extracellular matrix binding 0
        laminin binding + 33
paths to the root