Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:defense response to Gram-negative bacterium
go back to main search page
Accession:GO:0050829 term browser browse the term
Definition:Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
Synonyms:exact_synonym: defence response to Gram-negative bacteria;   defence response to Gram-negative bacterium;   defense response to Gram-negative bacteria
 related_synonym: Gram-negative antibacterial peptide activity


show annotations for term's descendants           Sort by:
 
defense response to Gram-negative bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015743.1 ISS GO_REF:0000024 AgBase GO_REF:0000024 Ensembl chr14:73,674,753...73,675,382 JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 ISO (MGI:MGI:4939876|PMID:21245295) RGD PMID:21245295 MGI:MGI:4939876 NCBI chr 7:115,766,484...115,828,514 JBrowse link
G Adm adrenomedullin ISO (PMID:10225288) RGD PMID:10225288 NCBI chr 1:175,443,189...175,447,260
Ensembl chr 1:175,445,088...175,447,259
JBrowse link
G App amyloid beta precursor protein IDA
ISO
PMID:20209079
(PMID:20209079)
RGD PMID:20209079, PMID:20209079 RGD:10400853 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Aqp1 aquaporin 1 ISO (PMID:18665841)
(MGI:MGI:4457239|PMID:18665841)
RGD PMID:18665841 MGI:MGI:4457239 NCBI chr 4:85,551,503...85,563,683
Ensembl chr 4:85,551,502...85,569,360
JBrowse link
G B2m beta-2 microglobulin ISO (PMID:23144825) RGD PMID:23144825 NCBI chr 3:114,087,287...114,093,311
Ensembl chr 3:114,087,287...114,093,309
JBrowse link
G Bpi bactericidal/permeability-increasing protein ISO
IBA
(PMID:1937776)
PMID:21873635
RGD PMID:1937776, PMID:21873635 RGD:13792537 NCBI chr 3:154,741,627...154,768,584
Ensembl chr 3:154,741,631...154,768,640
JBrowse link
G Camp cathelicidin antimicrobial peptide IMP
IBA
ISO
PMID:21873635
(PMID:12759353), (PMID:14978112), (PMID:20209079), (PMID:23537644), (PMID:7529412)
(MGI:MGI:3770082|PMID:17012259), (MGI:MGI:87828|PMID:9148921)
RGD PMID:7529412, PMID:9148921, PMID:12759353, PMID:14978112, PMID:17012259, PMID:20209079, PMID:23537644, PMID:19879657, PMID:21873635 MGI:MGI:3770082, MGI:MGI:87828, RGD:2316237, RGD:13792537 NCBI chr 8:117,930,557...117,932,371
Ensembl chr 8:117,930,546...117,932,518
JBrowse link
G Cd160 CD160 molecule ISO (MGI:MGI:5432939|PMID:22801499) RGD PMID:22801499 MGI:MGI:5432939 NCBI chr 2:198,933,681...198,965,380
Ensembl chr 2:198,935,133...198,942,732
JBrowse link
G Cd4 Cd4 molecule ISO MGI:MGI:1857281 (MGI:MGI:2683356|PMID:14688352) RGD PMID:14688352 MGI:MGI:2683356 NCBI chr 4:157,381,862...157,408,357
Ensembl chr 4:157,383,052...157,408,176
JBrowse link
G Chga chromogranin A IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15723172)
Ensembl
UniProt
RGD
PMID:15723172 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:126,434,226...126,445,569
Ensembl chr 6:126,434,226...126,445,568
JBrowse link
G Cst11 cystatin 11 ISO
IBA
ISS
(PMID:12072414)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:12072414, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:143,096,056...143,098,780
Ensembl chr 3:143,096,056...143,098,780
JBrowse link
G Ctsg cathepsin G IEA
ISO
GO_REF:0000107
(PMID:1937776)
Ensembl
RGD
PMID:1937776 GO_REF:0000107 NCBI chr15:35,107,333...35,113,678
Ensembl chr15:35,111,091...35,113,678
JBrowse link
G Defa10 defensin alpha 10 ISO
IBA
MGI:MGI:94880|MGI:MGI:94882|MGI:MGI:99582 (MGI:MGI:3698376|PMID:11248802)
PMID:21873635
RGD PMID:11248802, PMID:21873635 MGI:MGI:3698376, RGD:13792537 NCBI chr16:75,498,236...75,499,012
Ensembl chr16:75,498,236...75,499,012
JBrowse link
G Defa11 defensin alpha 11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,517,421...75,519,605
Ensembl chr16:75,517,505...75,518,336
JBrowse link
G Defa24 defensin alpha 24 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,345,086...75,346,122
Ensembl chr16:75,345,086...75,346,122
JBrowse link
G Defa5 defensin alpha 5 ISO
IBA
(PMID:21861459)
PMID:21873635
RGD PMID:21861459, PMID:21873635 RGD:13792537 NCBI chr16:75,338,050...75,340,401
Ensembl chr16:75,338,052...75,340,360
JBrowse link
G Defa6 defensin alpha 6 ISO
IBA
MGI:MGI:94880|MGI:MGI:94882|MGI:MGI:94883 (MGI:MGI:3698376|PMID:11248802)
PMID:21873635
RGD PMID:11248802, PMID:21873635 MGI:MGI:3698376, RGD:13792537 NCBI chr16:75,400,781...75,401,655
Ensembl chr16:75,400,781...75,401,655
JBrowse link
G Defa8 defensin alpha 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,428,675...75,429,568
Ensembl chr16:75,428,675...75,429,568
JBrowse link
G Defa9 defensin alpha 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,465,710...75,466,604
Ensembl chr16:75,465,710...75,466,606
JBrowse link
G Defal1 defensin alpha-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,366,925...75,367,985
Ensembl chr16:75,366,929...75,367,906
JBrowse link
G Defb1 defensin beta 1 ISO
IBA
ISS
(PMID:25122636)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:25122636, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr16:75,294,385...75,309,127
Ensembl chr16:75,294,376...75,309,176
JBrowse link
G Defb10 defensin beta 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,198,178...75,208,230
Ensembl chr16:75,198,178...75,208,230
JBrowse link
G Defb11 defensin beta 11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,146,200...75,156,555
Ensembl chr16:75,149,437...75,156,321
JBrowse link
G Defb13 defensin beta 13 NOT ISO RGD DOI:10.1016/j.ijms.2006.01.054 NCBI chr16:75,027,131...75,028,977
Ensembl chr16:75,027,131...75,028,977
JBrowse link
G Defb14 defensin beta 14 ISO (PMID:11085990), (PMID:15625724) RGD PMID:11085990, PMID:15625724 NCBI chr16:75,647,523...75,650,913
Ensembl chr16:75,647,680...75,648,538
JBrowse link
G Defb15 defensin beta 15 ISO (PMID:24189797) RGD PMID:24189797 NCBI chr16:75,105,290...75,107,931
Ensembl chr16:75,105,290...75,107,931
Ensembl chr16:75,105,290...75,107,931
JBrowse link
G Defb2 defensin beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,227,468...75,241,303
Ensembl chr16:75,227,468...75,241,303
JBrowse link
G Defb20 defensin beta 20 ISO (PMID:15625724) RGD PMID:15625724 NCBI chr 3:147,952,879...147,955,502
Ensembl chr 3:147,952,879...147,955,502
JBrowse link
G Defb21 defensin beta 21 ISO (PMID:15033915) RGD PMID:15033915 NCBI chr 3:148,047,638...148,048,952
Ensembl chr 3:148,047,638...148,048,952
JBrowse link
G Defb22 defensin beta 22 ISO (PMID:19373462) RGD PMID:19373462 NCBI chr 3:147,961,818...147,966,097
Ensembl chr 3:147,961,818...147,966,097
JBrowse link
G Defb24 defensin beta 24 ISO
IBA
(PMID:24449502)
PMID:21873635
RGD PMID:24449502, PMID:21873635 RGD:13792537 NCBI chr 3:148,051,364...148,057,497
Ensembl chr 3:148,051,263...148,057,523
JBrowse link
G Defb37 defensin beta 37 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,083,173...75,094,963
Ensembl chr16:75,083,172...75,095,108
JBrowse link
G Defb38 defensin beta 38 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,058,572...75,061,804
Ensembl chr16:75,058,572...75,061,804
JBrowse link
G Defb39 defensin beta 39 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,042,516...75,046,320
Ensembl chr16:75,042,516...75,046,320
JBrowse link
G Defb4 defensin beta 4 ISO
ISS
(MGI:MGI:5784982|PMID:20068036)
(PMID:15625724), (PMID:20068036)
GO_REF:0000024
RGD
UniProt
PMID:15625724, PMID:20068036 GO_REF:0000024, MGI:MGI:5784982 NCBI chr16:75,634,598...75,637,789
Ensembl chr16:75,634,598...75,637,789
JBrowse link
G Defb40 defensin beta 40 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,702,347...75,705,489
Ensembl chr16:75,702,347...75,705,489
JBrowse link
G Defb5 defensin beta 5 ISO (PMID:15625724), (PMID:20068036) RGD PMID:15625724, PMID:20068036 NCBI chr16:75,597,323...75,599,483
Ensembl chr16:75,589,530...75,599,534
JBrowse link
G Defb9 defensin beta 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,176,307...75,179,090
Ensembl chr16:75,176,247...75,179,089
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 ISO
ISS
(MGI:MGI:2670828|PMID:12884308)
(PMID:11007786)
GO_REF:0000024
RGD
UniProt
PMID:11007786, PMID:12884308 GO_REF:0000024, MGI:MGI:2670828 NCBI chr 1:201,620,642...201,689,905
NCBI chr 1:203,149,414...203,228,705
JBrowse link
G Drosha drosha ribonuclease III ISO (PMID:20180804) RGD PMID:20180804 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Galp galanin-like peptide ISO
IBA
(PMID:23537644)
PMID:21873635
RGD PMID:23537644, PMID:21873635 RGD:13792537 NCBI chr 1:71,352,417...71,374,457
Ensembl chr 1:71,352,419...71,373,605
JBrowse link
G Gsdmd gasdermin D ISO (MGI:MGI:5796057|PMID:27383986) RGD PMID:27383986 MGI:MGI:5796057 NCBI chr 7:116,889,147...116,894,134
Ensembl chr 7:116,889,572...116,894,134
JBrowse link
G H2bc12 H2B clustered histone 12 ISO (PMID:15019208) RGD PMID:15019208 NCBI chr17:44,527,421...44,527,801
Ensembl chr17:44,527,421...44,527,801
JBrowse link
G Hamp hepcidin antimicrobial peptide ISO (PMID:11034317), (PMID:11113131) RGD PMID:11034317, PMID:11113131 NCBI chr 1:89,368,021...89,369,960
Ensembl chr 1:89,368,021...89,369,960
JBrowse link
G Hist2h2be histone cluster 2 H2B family member E ISO (PMID:11859126) RGD PMID:11859126 NCBI chr 2:198,360,837...198,363,399
Ensembl chr 2:198,360,998...198,361,378
JBrowse link
G Hmgb2 high mobility group box 2 ISO
ISS
(PMID:23877675)
GO_REF:0000024
RGD
AgBase
PMID:23877675 GO_REF:0000024 NCBI chr16:36,077,615...36,080,191
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr11:49,708,038...49,709,128
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Ighe immunoglobulin heavy constant epsilon IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 6:138,066,728...138,068,606 JBrowse link
G Ighm immunoglobulin heavy constant mu IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 6:138,054,662...138,662,511 JBrowse link
G Il12b interleukin 12B ISO (PMID:15114670), (PMID:20027291) RGD PMID:15114670, PMID:20027291 NCBI chr10:30,034,447...30,048,774
Ensembl chr10:30,038,709...30,048,085
JBrowse link
G Il17a interleukin 17A ISO
IEA
(MGI:MGI:3828868|PMID:19144317)
GO_REF:0000107
RGD
Ensembl
PMID:19144317 GO_REF:0000107, MGI:MGI:3828868 NCBI chr 9:26,841,299...26,844,786
Ensembl chr 9:26,841,299...26,844,786
JBrowse link
G Il17f interleukin 17F ISO
IEA
(MGI:MGI:3828868|PMID:19144317)
GO_REF:0000107
RGD
Ensembl
PMID:19144317 GO_REF:0000107, MGI:MGI:3828868 NCBI chr 9:26,885,702...26,897,219
Ensembl chr 9:26,885,708...26,897,219
JBrowse link
G Il22ra1 interleukin 22 receptor subunit alpha 1 ISO MGI:MGI:4431742 (MGI:MGI:5432939|PMID:22801499) RGD PMID:22801499 MGI:MGI:5432939 NCBI chr 5:154,078,093...154,102,903
Ensembl chr 5:154,077,944...154,106,433
JBrowse link
G Il23a interleukin 23 subunit alpha ISO (PMID:15114670), (PMID:20027291) RGD PMID:15114670, PMID:20027291 NCBI chr 7:2,710,609...2,712,723
Ensembl chr 7:2,710,609...2,712,723
JBrowse link
G Irgm immunity-related GTPase M ISO (PMID:25891078) RGD PMID:25891078 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928
JBrowse link
G Lbp lipopolysaccharide binding protein ISO
IBA
IEA
(PMID:11528597)
PMID:21873635
MGI:MGI:1857975 (MGI:MGI:1097829|PMID:9338787), (MGI:MGI:3719540|PMID:12055258)
GO_REF:0000107
RGD
Ensembl
PMID:9338787, PMID:11528597, PMID:12055258, PMID:21873635 GO_REF:0000107, MGI:MGI:1097829, MGI:MGI:3719540, RGD:13792537 NCBI chr 3:154,786,232...154,812,910
Ensembl chr 3:154,786,215...154,813,464
JBrowse link
G Lce3e late cornified envelope 3E ISO (PMID:28634035) RGD PMID:28634035 NCBI chr 2:193,275,472...193,276,006
Ensembl chr 2:193,275,507...193,275,803
JBrowse link
G LOC100912990 beta-defensin 12-like ISO (MGI:MGI:2385406|PMID:12193721) RGD PMID:12193721 MGI:MGI:2385406 NCBI chr16:75,109,946...75,110,960
Ensembl chr16:75,118,002...75,120,417
JBrowse link
G LOC103694852 ribonuclease K6-like ISO
IBA
(PMID:16940129)
PMID:21873635
RGD PMID:16940129, PMID:21873635 RGD:13792537 Ensembl chr15:28,081,004...28,081,465 JBrowse link
G Ltf lactotransferrin ISO (PMID:15155221), (PMID:9596699) RGD PMID:9596699, PMID:15155221 NCBI chr 8:119,290,416...119,313,261
Ensembl chr 8:119,290,416...119,313,261
JBrowse link
G Lyc2 lysozyme C type 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:60,316,045...60,323,610
Ensembl chr 7:60,316,045...60,323,609
JBrowse link
G Lypd8 LY6/PLAUR domain containing 8 ISO
IBA
(MGI:MGI:5779978|PMID:27027293)
PMID:21873635
RGD PMID:27027293, PMID:21873635 MGI:MGI:5779978, RGD:13792537 NCBI chr10:43,817,773...43,828,812
Ensembl chr10:43,817,947...43,828,811
JBrowse link
G Lyz2 lysozyme 2 IMP
IBA
ISO
PMID:21873635
(MGI:MGI:3042773|PMID:14977423)
RGD PMID:14977423, PMID:2840982, PMID:21873635 MGI:MGI:3042773, RGD:1599862, RGD:13792537 NCBI chr 7:60,335,968...60,341,264
Ensembl chr 7:60,335,969...60,341,264
JBrowse link
G Lyzl4 lysozyme-like 4 NOT IDA PMID:22110709 UniProt PMID:22110709 RGD:12793004 NCBI chr 8:130,219,984...130,228,066
Ensembl chr 8:130,220,018...130,224,444
JBrowse link
G Mmp7 matrix metallopeptidase 7 ISO (MGI:MGI:3698376|PMID:11248802) RGD PMID:11248802 MGI:MGI:3698376 NCBI chr 8:5,893,253...5,900,965
Ensembl chr 8:5,893,249...5,901,049
JBrowse link
G Mpeg1 macrophage expressed 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:6294207|PMID:23753625), (MGI:MGI:6294210|PMID:23257510)
(PMID:23753625)
UniProt
RGD
PMID:23257510, PMID:23753625 GO_REF:0000024, MGI:MGI:6294207, MGI:MGI:6294210 NCBI chr 1:228,724,559...228,729,054
Ensembl chr 1:228,724,900...228,727,160
JBrowse link
G Mr1 major histocompatibility complex, class I-related IEA
ISO
GO_REF:0000107
MGI:MGI:3664578 (MGI:MGI:4818706|PMID:20581831), (MGI:MGI:4888422|PMID:21190736)
(PMID:20581831)
Ensembl
RGD
PMID:20581831, PMID:21190736 GO_REF:0000107, MGI:MGI:4818706, MGI:MGI:4888422 NCBI chr13:72,771,992...72,789,861
Ensembl chr13:72,771,984...72,789,841
JBrowse link
G Nlrp10 NLR family, pyrin domain containing 10 ISO (PMID:22672233) RGD PMID:22672233 NCBI chr 1:173,521,412...173,528,969
Ensembl chr 1:173,520,413...173,528,943
JBrowse link
G Nos2 nitric oxide synthase 2 IEP RGD PMID:16865779 RGD:1582113 NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
JBrowse link
G Np4 defensin NP-4 precursor ISO
IBA
(PMID:2500436)
PMID:21873635
RGD PMID:2500436, PMID:21873635 RGD:13792537 NCBI chr16:75,478,548...75,481,146
Ensembl chr16:75,414,786...75,481,115
JBrowse link
G Npy neuropeptide Y ISO (PMID:18603306) RGD PMID:18603306 NCBI chr 4:79,557,856...79,565,059
Ensembl chr 4:79,557,854...79,565,097
JBrowse link
G Optn optineurin IEA
ISO
GO_REF:0000107
(PMID:21617041)
Ensembl
RGD
PMID:21617041 GO_REF:0000107 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389
JBrowse link
G Peli3 pellino E3 ubiquitin protein ligase family member 3 ISO (MGI:MGI:5562512|PMID:23892723) RGD PMID:23892723 MGI:MGI:5562512 NCBI chr 1:220,191,209...220,204,032
Ensembl chr 1:220,190,067...220,204,032
JBrowse link
G Prkd1 protein kinase D1 ISO (MGI:MGI:5787845|PMID:27184844) RGD PMID:27184844 MGI:MGI:5787845 NCBI chr 6:71,035,017...71,349,531
Ensembl chr 6:71,035,332...71,349,249
JBrowse link
G Pycard PYD and CARD domain containing ISO (PMID:16982856), (PMID:21487011) RGD PMID:16982856, PMID:21487011 NCBI chr 1:199,438,029...199,439,062
Ensembl chr 1:199,437,832...199,439,210
JBrowse link
G Rarres2 retinoic acid receptor responder 2 ISO (PMID:23527010) RGD PMID:23527010 NCBI chr 4:78,205,809...78,208,956
Ensembl chr 4:78,205,812...78,208,767
JBrowse link
G RatNP-3b defensin RatNP-3 precursor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,528,348...75,530,511
Ensembl chr16:75,497,832...75,530,517
JBrowse link
G Reg3b regenerating family member 3 beta IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5488881|PMID:21694778)
Ensembl
UniProt
RGD
PMID:21694778 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5488881 NCBI chr 4:109,467,272...109,470,510
Ensembl chr 4:109,467,272...109,470,510
JBrowse link
G Reg3g regenerating family member 3 gamma ISO (MGI:MGI:5897756|PMID:16931762) RGD PMID:16931762 MGI:MGI:5897756 NCBI chr 4:109,529,679...109,532,234
Ensembl chr 4:109,529,679...109,532,234
JBrowse link
G RGD1306474 similar to RIKEN cDNA 9530003J23 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:60,305,006...60,309,878
Ensembl chr 7:60,305,006...60,309,878
JBrowse link
G RGD1559962 similar to High mobility group protein 2 (HMG-2) ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 1:20,416,735...20,417,959
Ensembl chr 1:20,417,008...20,417,637
JBrowse link
G RGD1561694 similar to High mobility group protein 2 (HMG-2) ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr14:73,674,647...73,675,638 JBrowse link
G Rnase2 ribonuclease A family member 2 NOT ISO (PMID:23992292) RGD PMID:23992292 NCBI chr15:28,154,482...28,155,291
Ensembl chr15:28,154,482...28,155,291
JBrowse link
G Rnase3 ribonuclease A family member 3 ISO (PMID:23992292) RGD PMID:23992292 NCBI chr15:28,216,744...28,217,614
Ensembl chr15:28,216,744...28,217,614
JBrowse link
G Rnase6 ribonuclease A family member k6 ISO
IBA
(PMID:25075772)
PMID:21873635
(MGI:MGI:5902674|PMID:25075772)
RGD PMID:25075772, PMID:21873635 MGI:MGI:5902674, RGD:13792537 NCBI chr15:28,080,307...28,084,269
Ensembl chr15:28,081,004...28,081,465
JBrowse link
G Romo1 reactive oxygen species modulator 1 ISO (PMID:22083756) RGD PMID:22083756 NCBI chr 3:151,688,213...151,689,813
Ensembl chr 3:151,688,454...151,689,711
JBrowse link
G Rpl30 ribosomal protein L30 ISO (PMID:15019208) RGD PMID:15019208 NCBI chr 7:73,213,538...73,216,431
Ensembl chr 7:73,213,581...73,216,251
JBrowse link
G Rps19 ribosomal protein S19 ISO (PMID:15019208) RGD PMID:15019208 NCBI chr 1:81,750,873...81,756,629
Ensembl chr 1:81,750,928...81,756,627
JBrowse link
G Serpine1 serpin family E member 1 ISO
IEA
UniProtKB:P22777 (PMID:17032919)
GO_REF:0000107
(MGI:MGI:3830955|PMID:17032919)
RGD
Ensembl
PMID:17032919 GO_REF:0000107, MGI:MGI:3830955 NCBI chr12:22,641,104...22,651,482
Ensembl chr12:22,641,104...22,651,482
JBrowse link
G Slc11a1 solute carrier family 11 member 1 ISO
IEA
(MGI:MGI:55719|PMID:6358358)
GO_REF:0000107
RGD
Ensembl
PMID:6358358 GO_REF:0000107, MGI:MGI:55719 NCBI chr 9:81,655,590...81,666,697
Ensembl chr 9:81,655,629...81,666,706
JBrowse link
G Ssc5d scavenger receptor cysteine rich family member with 5 domains ISO (MGI:MGI:4939978|PMID:21217009) RGD PMID:21217009 MGI:MGI:4939978 NCBI chr 1:72,443,750...72,462,293
Ensembl chr 1:72,443,758...72,461,547
JBrowse link
G Tac1 tachykinin, precursor 1 ISO (PMID:18603306) RGD PMID:18603306 NCBI chr 4:33,638,853...33,646,819
Ensembl chr 4:33,638,709...33,646,819
JBrowse link
G Tfeb transcription factor EB ISO (MGI:MGI:5787845|PMID:27184844) RGD PMID:27184844 MGI:MGI:5787845 NCBI chr 9:15,208,141...15,264,101
Ensembl chr 9:15,207,822...15,214,596
JBrowse link
G Tlr4 toll-like receptor 4 ISO
IBA
IEA
MGI:MGI:1860885 (MGI:MGI:3530402|PMID:15661922)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15661922, PMID:21873635 GO_REF:0000107, MGI:MGI:3530402, RGD:13792537 NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
JBrowse link
G Tlr9 toll-like receptor 9 ISO (PMID:22427638) RGD PMID:22427638 NCBI chr 8:114,916,122...114,920,171
Ensembl chr 8:114,916,122...114,920,171
JBrowse link
G Tnfrsf14 TNF receptor superfamily member 14 ISO
IBA
MGI:MGI:3582550 (MGI:MGI:5432939|PMID:22801499)
PMID:21873635
RGD PMID:22801499, PMID:21873635 MGI:MGI:5432939, RGD:13792537 NCBI chr 5:172,328,259...172,337,221
Ensembl chr 5:172,328,262...172,335,892
JBrowse link
G Tslp thymic stromal lymphopoietin ISO (PMID:24850429) RGD PMID:24850429 NCBI chr18:25,613,601...25,618,066
Ensembl chr18:25,613,831...25,617,361
JBrowse link
G Tusc2 tumor suppressor 2, mitochondrial calcium regulator ISO MGI:MGI:3706236 (MGI:MGI:5518492|PMID:24042119) RGD PMID:24042119 MGI:MGI:5518492 NCBI chr 8:116,318,963...116,322,181
Ensembl chr 8:116,318,963...116,322,181
JBrowse link
G Umod uromodulin ISO
IEA
(MGI:MGI:3525980|PMID:14665435), (MGI:MGI:3574968|PMID:14871399)
GO_REF:0000107
RGD
Ensembl
PMID:14665435, PMID:14871399 GO_REF:0000107, MGI:MGI:3525980, MGI:MGI:3574968 NCBI chr 1:189,186,027...189,199,939
Ensembl chr 1:189,186,026...189,199,376
JBrowse link
G Vip vasoactive intestinal peptide ISO (PMID:18603306) RGD PMID:18603306 NCBI chr 1:42,169,307...42,177,582
Ensembl chr 1:42,169,501...42,177,582
JBrowse link
biosynthetic process of antibacterial peptides active against Gram-negative bacteria term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elane elastase, neutrophil expressed ISO (PMID:20421939) RGD PMID:20421939 NCBI chr 7:12,638,320...12,640,168
Ensembl chr 7:12,638,322...12,640,232
JBrowse link
neutrophil-mediated killing of gram-negative bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elane elastase, neutrophil expressed ISO (PMID:20421939) RGD PMID:20421939 NCBI chr 7:12,638,320...12,640,168
Ensembl chr 7:12,638,322...12,640,232
JBrowse link
G F2 coagulation factor II IEA
ISO
GO_REF:0000107
(PMID:20421939)
Ensembl
RGD
PMID:20421939 GO_REF:0000107 NCBI chr 3:80,529,468...80,542,993
Ensembl chr 3:80,529,428...80,543,031
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 ISO MGI:MGI:1930003 (MGI:MGI:5471912|PMID:23241959) RGD PMID:23241959 MGI:MGI:5471912 NCBI chr 9:14,727,887...14,743,371
Ensembl chr 9:14,727,976...14,809,447
JBrowse link
G Trem3 triggering receptor expressed on myeloid cells 3 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 9:14,713,935...14,725,945
Ensembl chr 9:14,713,935...14,724,093
JBrowse link
G Tusc2 tumor suppressor 2, mitochondrial calcium regulator ISO MGI:MGI:3706236 (MGI:MGI:5518492|PMID:24042119) RGD PMID:24042119 MGI:MGI:5518492 NCBI chr 8:116,318,963...116,322,181
Ensembl chr 8:116,318,963...116,322,181
JBrowse link
positive regulation of neutrophil mediated killing of gram-negative bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F2rl1 F2R like trypsin receptor 1 ISO (PMID:21501162) RGD PMID:21501162 NCBI chr 2:25,222,324...25,235,275
Ensembl chr 2:25,222,328...25,235,275
JBrowse link
regulation of neutrophil mediated killing of gram-negative bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcl6 C-X-C motif chemokine ligand 6 ISO MGI:MGI:4819800 (MGI:MGI:4819434|PMID:20643340) RGD PMID:20643340 MGI:MGI:4819434 NCBI chr14:18,860,201...18,920,839
Ensembl chr14:18,860,264...18,862,407
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    interspecies interaction between organisms 1919
      response to other organism 1708
        defense response to other organism 1119
          defense response to bacterium 429
            defense response to Gram-negative bacterium 107
              G protein-coupled receptor signaling pathway involved in defense response to Gram-negative bacterium 0
              biosynthetic process of antibacterial peptides active against Gram-negative bacteria + 1
              neutrophil-mediated killing of gram-negative bacterium + 7
              positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium 0
Path 2
Term Annotations click to browse term
  biological_process 20028
    response to stimulus 10583
      response to external stimulus 3204
        response to external biotic stimulus 1712
          response to other organism 1708
            response to bacterium 1043
              defense response to bacterium 429
                defense response to Gram-negative bacterium 107
                  G protein-coupled receptor signaling pathway involved in defense response to Gram-negative bacterium 0
                  biosynthetic process of antibacterial peptides active against Gram-negative bacteria + 1
                  neutrophil-mediated killing of gram-negative bacterium + 7
                  positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.