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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of phagocytosis
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Accession:GO:0050764 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material.



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regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgr FGR proto-oncogene, Src family tyrosine kinase involved_in ISS
ISO
GO_REF:0000024
(MGI:3640451|PMID:11672534)
UniProt
RGD
PMID:11672534 GO_REF:0000024 MGI:3640451 NCBI chr 5:145,189,814...145,219,571
Ensembl chr 5:145,189,841...145,217,326
JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase involved_in ISS
ISO
GO_REF:0000024
(PMID:11904303)
UniProt
RGD
PMID:11904303 GO_REF:0000024 NCBI chr 3:141,571,587...141,614,696
Ensembl chr 3:141,571,587...141,614,693
JBrowse link
G Itgav integrin subunit alpha V involved_in ISO (PMID:10570297) RGD PMID:10570297 NCBI chr 3:68,838,524...68,926,653
Ensembl chr 3:68,838,189...68,926,639
JBrowse link
G Olfm4 olfactomedin 4 NOT|involved_in ISO (PMID:23922742) RGD PMID:23922742 NCBI chr15:55,385,100...55,429,687
Ensembl chr15:55,407,148...55,429,681
JBrowse link
G Pot1b protection of telomeres 1B involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 9:9,670,355...9,728,624
Ensembl chr 9:9,670,362...9,728,532
JBrowse link
G Prkcg protein kinase C, gamma acts_upstream_of_or_within ISO (MGI:3037226|PMID:15006698) RGD PMID:15006698 MGI:3037226 NCBI chr 1:65,832,851...65,860,676
Ensembl chr 1:65,832,855...65,859,384
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:12100025) RGD PMID:12100025 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
JBrowse link
G Scarb1 scavenger receptor class B, member 1 TAS
IDA
RGD PMID:10026214 PMID:12016218 RGD:1304217, RGD:1304245 NCBI chr12:31,296,143...31,362,649
Ensembl chr12:31,296,156...31,362,647
JBrowse link
G Sphk1 sphingosine kinase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:6158194|PMID:29662056)
UniProt
RGD
PMID:29662056 GO_REF:0000024 MGI:6158194 NCBI chr10:101,758,567...101,764,240
Ensembl chr10:101,758,711...101,764,240
JBrowse link
G Syk spleen associated tyrosine kinase involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4414596|PMID:19797524)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19797524 GO_REF:0000024 GO_REF:0000107 MGI:4414596 NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,604,619...12,661,410
JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:3690533|PMID:16982801)
UniProt
RGD
PMID:16982801 GO_REF:0000024 MGI:3690533 NCBI chr 1:207,031,369...207,093,787
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
negative regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd300lf Cd300 molecule-like family member F involved_in ISS
ISO
GO_REF:0000024
(MGI:5819329|PMID:26768664)
UniProt
RGD
PMID:26768664 GO_REF:0000024 MGI:5819329 NCBI chr10:100,359,942...100,376,130
Ensembl chr10:100,359,943...100,376,041
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:20826760) RGD PMID:20826760 NCBI chr12:5,973,062...5,978,565 JBrowse link
negative regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in ISO (MGI:6271154|PMID:25568335) RGD PMID:25568335 MGI:6271154 NCBI chr16:2,118,503...2,166,741
Ensembl chr16:2,121,255...2,166,692
JBrowse link
G Cd47 Cd47 molecule involved_in IMP PMID:21401967 ARUK-UCL PMID:21401967 RGD:13792533 NCBI chr11:50,906,052...50,970,000
Ensembl chr11:50,906,177...50,969,425
JBrowse link
negative regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in ISO
ISS
(PMID:10961870)
GO_REF:0000024
RGD
UniProt
PMID:10961870 GO_REF:0000024 NCBI chr11:77,721,912...77,735,644
Ensembl chr11:77,721,912...77,735,564
JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within ISO (MGI:5562485|PMID:24035364) RGD PMID:24035364 MGI:5562485 NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5562485|PMID:24035364)
Ensembl
RGD
PMID:24035364 GO_REF:0000107 MGI:5562485 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO MGI:1934631|MGI:3587769 (MGI:5562485|PMID:24035364) RGD PMID:24035364 MGI:5562485 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Cnn2 calponin 2 acts_upstream_of_or_within ISO MGI:3820422 (MGI:3819912|PMID:18617524) RGD PMID:18617524 MGI:3819912 NCBI chr 7:9,712,505...9,719,711
Ensembl chr 7:9,712,516...9,719,656
JBrowse link
G Csk C-terminal Src kinase IDA RGD PMID:10884975 RGD:5134370 NCBI chr 8:58,029,748...58,048,742
Ensembl chr 8:58,029,749...58,048,292
JBrowse link
G Dysf dysferlin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:18276788)
MGI:1857883 (MGI:3775586|PMID:18276788)
RGD PMID:18276788 PMID:21873635 MGI:3775586, RGD:13792537 NCBI chr 4:116,490,877...116,690,709
Ensembl chr 4:116,490,616...116,690,709
JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb acts_upstream_of_or_within ISO MGI:1857166 (MGI:3608295|PMID:12385742) RGD PMID:12385742 MGI:3608295 NCBI chr13:83,191,253...83,207,776
Ensembl chr13:83,193,163...83,207,778
JBrowse link
G Fer1l5 fer-1-like family member 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:38,605,835...38,661,869
Ensembl chr 9:38,607,843...38,660,425
JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6144310|PMID:29378918)
UniProt
RGD
PMID:29378918 GO_REF:0000024 MGI:6144310 NCBI chr 5:28,259,821...28,307,225
Ensembl chr 5:28,259,760...28,307,225
JBrowse link
G Plscr1 phospholipid scramblase 1 involved_in ISO
ISS
(PMID:26745724)
GO_REF:0000024
RGD
UniProt
PMID:26745724 GO_REF:0000024 NCBI chr 8:92,784,279...92,804,698
Ensembl chr 8:92,784,356...92,804,692
JBrowse link
G Prtn3 proteinase 3 involved_in ISO (PMID:17712045) RGD PMID:17712045 NCBI chr 7:9,822,123...9,831,300
Ensembl chr 7:9,822,122...9,831,944
JBrowse link
G Pten phosphatase and tensin homolog IMP RGD PMID:18056380 RGD:2292524 NCBI chr 1:230,631,303...230,696,754
Ensembl chr 1:230,630,338...230,696,838
JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISO
ISS
(PMID:21347310)
GO_REF:0000024
RGD
UniProt
PMID:21347310 GO_REF:0000024 NCBI chr10:33,169,415...33,174,896
Ensembl chr10:33,169,169...33,174,975
JBrowse link
G Sftpd surfactant protein D IDA RGD PMID:12654779 RGD:4144053 NCBI chr16:17,046,491...17,058,968
Ensembl chr16:17,046,483...17,059,927
JBrowse link
G Siglec1 sialic acid binding Ig like lectin 1 involved_in ISO (PMID:22630829) RGD PMID:22630829 NCBI chr 3:118,287,988...118,307,125
Ensembl chr 3:118,287,988...118,306,850
JBrowse link
G Sirpa signal-regulatory protein alpha involved_in IMP
ISO
IEA
PMID:21401967
(MGI:6201881|PMID:21401967)
GO_REF:0000107
RGD
Ensembl
PMID:21401967 PMID:21401967 GO_REF:0000107 MGI:6201881, RGD:13792533 NCBI chr 3:116,819,730...116,858,099
Ensembl chr 3:116,819,726...116,858,098
JBrowse link
G Snx3 sorting nexin 3 involved_in ISO
ISS
(PMID:23237080)
GO_REF:0000024
RGD
UniProt
PMID:23237080 GO_REF:0000024 NCBI chr20:45,992,446...46,025,361
Ensembl chr20:45,992,720...46,025,379
JBrowse link
G Syt11 synaptotagmin 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:5468041|PMID:23303671), (MGI:5913303|PMID:28686317)
UniProt
RGD
PMID:23303671 PMID:28686317 GO_REF:0000024 MGI:5468041 MGI:5913303 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IDA RGD PMID:16272332 RGD:1579756 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tlr2 toll-like receptor 2 involved_in ISO UniProtKB:P05067|UniProtKB:P49768 (MGI:5307186|PMID:22198949) RGD PMID:22198949 MGI:5307186 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
negative regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd300a Cd300a molecule involved_in ISO (PMID:22302738) RGD PMID:22302738 NCBI chr10:99,929,801...99,942,674
Ensembl chr10:99,929,801...99,942,674
JBrowse link
G Siglec8 sialic acid binding Ig-like lectin 8 acts_upstream_of_or_within ISO (MGI:5529741|PMID:24227736) RGD PMID:24227736 MGI:5529741 NCBI chr 1:94,092,737...94,103,134
Ensembl chr 1:94,093,395...94,103,034
JBrowse link
positive regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2 complement C2 involved_in ISO (PMID:19302245) RGD PMID:19302245 NCBI chr20:3,951,474...3,970,376
Ensembl chr20:3,951,474...3,976,505
JBrowse link
G C3 complement C3 involved_in ISO
IEA
(PMID:19302245)
GO_REF:0000107
RGD
Ensembl
PMID:19302245 GO_REF:0000107 NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429
JBrowse link
G C4a complement C4A involved_in ISO UniProtKB:P0C0L5 (PMID:19302245) RGD PMID:19302245 NCBI chr20:4,005,731...4,020,083
Ensembl chr20:4,005,731...4,020,080
JBrowse link
G C4b complement C4B (Chido blood group) involved_in ISO UniProtKB:P0C0L4|UniProtKB:P0C0L5 (PMID:19302245) RGD PMID:19302245 NCBI chr20:4,197,371...4,211,684
Ensembl chr20:4,197,366...4,211,681
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 involved_in ISO (MGI:4943793|PMID:20691665) RGD PMID:20691665 MGI:4943793 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
JBrowse link
G Cd300lf Cd300 molecule-like family member F involved_in ISS
ISO
GO_REF:0000024
(MGI:5301804|PMID:21865548), (MGI:5819329|PMID:26768664)
UniProt
RGD
PMID:21865548 PMID:26768664 GO_REF:0000024 MGI:5301804 MGI:5819329 NCBI chr10:100,359,942...100,376,130
Ensembl chr10:100,359,943...100,376,041
JBrowse link
positive regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:3662940|PMID:16908670)
Alzheimers_University_of_Toronto
RGD
PMID:16908670 GO_REF:0000024 MGI:3662940 NCBI chr 7:9,691,452...9,711,466
Ensembl chr 7:9,691,449...9,711,425
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:24990881) RGD PMID:24990881 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in ISO (MGI:6271154|PMID:25568335) RGD PMID:25568335 MGI:6271154 NCBI chr 7:20,135,248...20,184,757
Ensembl chr 7:20,135,375...20,184,754
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO UniProtKB:Q64455 (MGI:3774343|PMID:18249142) RGD PMID:18249142 MGI:3774343 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
JBrowse link
G Ptprj protein tyrosine phosphatase, receptor type, J involved_in ISO UniProtKB:P06800 (MGI:3774343|PMID:18249142) RGD PMID:18249142 MGI:3774343 NCBI chr 3:76,405,917...76,561,842
Ensembl chr 3:76,405,927...76,562,260
JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IMP RGD PMID:18832707 RGD:9835043 NCBI chr 2:193,208,631...193,286,513
Ensembl chr 2:193,208,635...193,286,501
JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 IMP RGD PMID:18832707 RGD:9835043 NCBI chr 3:12,898,349...13,016,234
Ensembl chr 3:12,898,266...13,013,984
JBrowse link
positive regulation of opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo18a myosin XVIIIa involved_in ISO
IEA
(PMID:21123169)
(MGI:5810257|PMID:21123169)
GO_REF:0000107
RGD
Ensembl
PMID:21123169 GO_REF:0000107 MGI:5810257 NCBI chr10:62,654,218...62,755,464
Ensembl chr10:62,654,281...62,755,468
JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO
GO_REF:0000024
(MGI:3841317|PMID:19342668)
UniProt
RGD
PMID:19342668 GO_REF:0000024 MGI:3841317 NCBI chr 5:151,041,339...151,109,433
Ensembl chr 5:151,041,340...151,062,658
JBrowse link
positive regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006142.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:85,011,149...85,049,805 JBrowse link
G AABR07006691.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:228,016,498...228,043,066 JBrowse link
G AABR07008876.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:85,809,429...85,855,354 JBrowse link
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:5553241|PMID:20495215), (MGI:6271506|PMID:27472885)
Alzheimers_University_of_Toronto
RGD
PMID:20495215 PMID:27472885 GO_REF:0000024 MGI:5553241 MGI:6271506 NCBI chr 7:9,691,452...9,711,466
Ensembl chr 7:9,691,449...9,711,425
JBrowse link
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:88141 (MGI:3698699|PMID:17116687) RGD PMID:17116687 MGI:3698699 NCBI chr10:61,262,516...61,461,331
Ensembl chr10:61,262,516...61,461,505
JBrowse link
G Ahsg alpha-2-HS-glycoprotein involved_in ISO
ISS
(PMID:12725640)
GO_REF:0000024
RGD
UniProt
PMID:12725640 GO_REF:0000024 NCBI chr11:78,117,903...78,145,956 JBrowse link
G Apoa1 apolipoprotein A1 involved_in ISO
ISS
(PMID:20495215)
GO_REF:0000024
RGD
UniProt
PMID:20495215 GO_REF:0000024 NCBI chr 8:46,527,251...46,529,035
Ensembl chr 8:46,527,144...46,529,035
JBrowse link
G Apoa2 apolipoprotein A2 involved_in ISS
ISO
GO_REF:0000024
(PMID:20495215)
UniProt
RGD
PMID:20495215 GO_REF:0000024 NCBI chr13:83,644,460...83,646,358
Ensembl chr13:83,644,470...83,646,355
JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:107771 (MGI:3698699|PMID:17116687) RGD PMID:17116687 MGI:3698699 NCBI chr20:13,471,679...13,596,497
Ensembl chr20:13,471,668...13,597,016
JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO MGI:1861799 (MGI:2177393|PMID:11901193) RGD PMID:11901193 MGI:2177393 NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429
JBrowse link
G Calr calreticulin involved_in ISO (MGI:3813433|PMID:17187072) RGD PMID:17187072 MGI:3813433 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414
JBrowse link
G Camk1d calcium/calmodulin-dependent protein kinase ID involved_in ISO (PMID:15840691) RGD PMID:15840691 NCBI chr17:72,581,899...72,982,704
Ensembl chr17:72,581,979...72,980,556
JBrowse link
G Cd36 CD36 molecule IMP RGD PMID:23238794 RGD:8696010 NCBI chr 4:17,317,343...17,410,084 JBrowse link
G Cd47 Cd47 molecule acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
IEA
(MGI:2680858|PMID:14634079)
PMID:21873635
GO_REF:0000002
RGD
InterPro
PMID:14634079 PMID:23238794 PMID:21873635 GO_REF:0000002 MGI:2680858, RGD:8696010, RGD:13792537 NCBI chr11:50,906,052...50,970,000
Ensembl chr11:50,906,177...50,969,425
JBrowse link
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (MGI:3027358|PMID:14707091) RGD PMID:14707091 MGI:3027358 NCBI chr12:1,915,902...1,924,529
Ensembl chr12:1,915,919...1,924,539
JBrowse link
G Clec7a C-type lectin domain containing 7A involved_in IBA
ISO
PMID:21873635
(PMID:19358895)
RGD PMID:19358895 PMID:21873635 RGD:13792537 NCBI chr 4:162,902,731...162,913,931
Ensembl chr 4:162,902,732...162,913,897
JBrowse link
G Cyba cytochrome b-245 alpha chain involved_in ISO (PMID:22423966) RGD PMID:22423966 NCBI chr19:50,487,598...50,495,669
Ensembl chr19:50,487,597...50,495,721
JBrowse link
G Dnm2 dynamin 2 IMP RGD PMID:12802072 RGD:9685290 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157
JBrowse link
G Dock2 dedicator of cytokinesis 2 involved_in ISO (MGI:5291858|PMID:21892172) RGD PMID:21892172 MGI:5291858 NCBI chr10:18,827,237...19,244,823 JBrowse link
G Fcer1g Fc fragment of IgE receptor Ig involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1857165|MGI:2384004 (MGI:2177393|PMID:11901193), (MGI:2679189|PMID:11911823), (MGI:2683721|PMID:11237803)
RGD PMID:11237803 PMID:11901193 PMID:11911823 PMID:21873635 MGI:2177393 MGI:2679189 MGI:2683721, RGD:13792537 NCBI chr13:83,649,447...83,654,215
Ensembl chr13:83,649,449...83,671,443
JBrowse link
G Fcgr1a Fc fragment of IgG receptor Ia acts_upstream_of_or_within ISO MGI:2664927|MGI:2679238 (MGI:2664488|PMID:11911824), (MGI:2679188|PMID:9551950), (MGI:2679189|PMID:11911823) RGD PMID:9551950 PMID:11911823 PMID:11911824 MGI:2664488 MGI:2679188 MGI:2679189 NCBI chr 2:183,851,075...183,860,077
Ensembl chr 2:183,851,077...183,859,994
JBrowse link
G Fcgr2a Fc fragment of IgG receptor IIa acts_upstream_of_or_within ISO MGI:1861924 (MGI:2683747|PMID:9834201), (MGI:2683749|PMID:9743367), (MGI:82508|PMID:8769481) RGD PMID:8769481 PMID:9743367 PMID:9834201 MGI:2683747 MGI:2683749 MGI:82508 NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967
JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb acts_upstream_of_or_within ISO (MGI:82508|PMID:8769481) RGD PMID:8769481 MGI:82508 NCBI chr13:83,191,253...83,207,776
Ensembl chr13:83,193,163...83,207,778
JBrowse link
G Fpr2 formyl peptide receptor 2 involved_in ISO (PMID:25505240) RGD PMID:25505240 NCBI chr 1:58,776,592...58,785,227
Ensembl chr 1:58,776,752...58,786,019
JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO
ISS
(PMID:18395422)
GO_REF:0000024
RGD
UniProt
PMID:18395422 GO_REF:0000024 NCBI chr16:76,045,430...76,075,904
Ensembl chr16:76,045,426...76,075,904
JBrowse link
G Gata2 GATA binding protein 2 involved_in IDA PMID:12933836 UniProt PMID:12933836 RGD:632788 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IMP RGD PMID:9886410 RGD:10059405 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
JBrowse link
G Ifng interferon gamma involved_in ISO (MGI:4454469|PMID:20368278) RGD PMID:20368278 MGI:4454469 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Ighg1 immunoglobulin heavy constant gamma 1 acts_upstream_of_or_within ISO (MGI:2177393|PMID:11901193), (MGI:2664488|PMID:11911824), (MGI:2679188|PMID:9551950), (MGI:2679189|PMID:11911823), (MGI:2683747|PMID:9834201), (MGI:2683749|PMID:9743367), (MGI:82508|PMID:8769481) RGD PMID:8769481 PMID:9551950 PMID:9743367 PMID:9834201 PMID:11901193 More... MGI:2177393 MGI:2664488 MGI:2679188 MGI:2679189 MGI:2683747 MGI:2683749 MGI:82508 Ensembl chr 6:132,389,370...132,393,397 JBrowse link
G Il15 interleukin 15 involved_in ISO
ISS
(PMID:15123770)
GO_REF:0000024
RGD
UniProt
PMID:15123770 GO_REF:0000024 NCBI chr19:25,640,013...25,706,818
Ensembl chr19:25,640,251...25,706,820
JBrowse link
G Il15ra interleukin 15 receptor subunit alpha involved_in ISO (PMID:15123770) RGD PMID:15123770 NCBI chr17:66,802,300...66,831,973
Ensembl chr17:66,802,334...66,832,278
JBrowse link
G Il1b interleukin 1 beta involved_in IEA
ISO
GO_REF:0000107
(PMID:18201371)
Ensembl
RGD
PMID:18201371 GO_REF:0000107 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
JBrowse link
G Il2rb interleukin 2 receptor subunit beta involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15123770)
UniProt
Ensembl
RGD
PMID:15123770 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:110,033,341...110,048,054
Ensembl chr 7:110,033,341...110,048,054
JBrowse link
G Il2rg interleukin 2 receptor subunit gamma involved_in ISO (PMID:15123770) RGD PMID:15123770 NCBI chr  X:66,395,330...66,399,026
Ensembl chr  X:66,392,542...66,399,823
JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:25453580) RGD PMID:25453580 NCBI chr20:11,061,394...11,097,656
Ensembl chr20:11,061,430...11,097,600
JBrowse link
G Lman2 lectin, mannose-binding 2 involved_in ISO (PMID:22016386)
(MGI:5574292|PMID:22016386)
RGD PMID:22016386 MGI:5574292 NCBI chr17:9,269,236...9,286,923
Ensembl chr17:9,269,022...9,287,265
JBrowse link
G LOC100909879 tyrosine-protein phosphatase non-receptor type substrate 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:85,248,600...85,278,835 JBrowse link
G LOC100909964 tyrosine-protein phosphatase non-receptor type substrate 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:85,011,102...85,049,473
Ensembl chr 2:85,713,807...85,723,421
JBrowse link
G LOC100909977 leukocyte surface antigen CD47-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:51,554,880...51,619,586
Ensembl chr11:51,554,714...51,619,588
JBrowse link
G Lrp1 LDL receptor related protein 1 IMP RGD PMID:19299462 RGD:13800552 NCBI chr 7:63,380,325...63,461,029
Ensembl chr 7:63,380,356...63,460,910
JBrowse link
G Lyar Ly1 antibody reactive involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:6107438|PMID:25735755)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25735755 GO_REF:0000024 GO_REF:0000107 MGI:6107438 NCBI chr14:72,576,878...72,590,854
Ensembl chr14:72,576,879...72,590,612
JBrowse link
G Mbl1 mannose binding lectin 1 acts_upstream_of_or_within ISO MGI:96924 (MGI:3577322|PMID:15148336) RGD PMID:15148336 MGI:3577322 NCBI chr16:17,029,146...17,035,187
Ensembl chr16:17,029,118...17,035,174
JBrowse link
G Mbl2 mannose binding lectin 2 acts_upstream_of_or_within ISO MGI:96923 (MGI:3577322|PMID:15148336) RGD PMID:15148336 MGI:3577322 NCBI chr 1:228,016,439...228,024,736 JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase involved_in IDA
ISO
(PMID:18395422) RGD PMID:18395422 PMID:11592982 RGD:69668 NCBI chr 3:115,939,351...116,045,141
Ensembl chr 3:115,939,351...116,046,554
JBrowse link
G Mex3b mex-3 RNA binding family member B acts_upstream_of_or_within ISO MGI:5638674 (MGI:5585359|PMID:24803656) RGD PMID:24803656 MGI:5585359 NCBI chr 1:136,855,130...136,859,365
Ensembl chr 1:136,855,130...136,859,354
JBrowse link
G Mfge8 milk fat globule EGF and factor V/VIII domain containing involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2681272|PMID:12000961)
Ensembl
RGD
PMID:12000961 GO_REF:0000107 MGI:2681272 NCBI chr 1:133,064,665...133,080,069
Ensembl chr 1:133,064,665...133,080,073
JBrowse link
G Myh9 myosin, heavy chain 9 IMP RGD PMID:19117932 RGD:6902913 NCBI chr 7:109,343,718...109,424,457
Ensembl chr 7:109,343,706...109,424,457
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (MGI:3839525|PMID:19139201) RGD PMID:19139201 MGI:3839525 NCBI chr19:18,379,720...18,422,817
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO
GO_REF:0000024
(MGI:3639848|PMID:16407308)
UniProt
RGD
PMID:16407308 GO_REF:0000024 MGI:3639848 NCBI chr 5:151,041,339...151,109,433
Ensembl chr 5:151,041,340...151,062,658
JBrowse link
G Pros1 protein S IDA RGD PMID:15949798 RGD:2300013 NCBI chr11:230,597...311,288
Ensembl chr11:230,696...311,286
JBrowse link
G Ptk2 protein tyrosine kinase 2 IMP RGD PMID:12912913 RGD:1299194 NCBI chr 7:105,126,725...105,331,848
Ensembl chr 7:105,126,728...105,331,783
JBrowse link
G Ptx3 pentraxin 3 acts_upstream_of_or_within ISO (MGI:3037598|PMID:14726497) RGD PMID:14726497 MGI:3037598 NCBI chr 2:150,487,513...150,493,323
Ensembl chr 2:150,487,513...150,493,323
JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO (MGI:5291858|PMID:21892172) RGD PMID:21892172 MGI:5291858 NCBI chr 1:182,601,657...182,603,013
Ensembl chr 1:182,601,174...182,602,955
JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in ISO (PMID:24404184) RGD PMID:24404184 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Rap1gap Rap1 GTPase-activating protein acts_upstream_of_or_within ISO (MGI:5585359|PMID:24803656) RGD PMID:24803656 MGI:5585359 NCBI chr 5:149,873,987...149,939,254
Ensembl chr 5:149,892,019...149,939,253
JBrowse link
G Sftpa1 surfactant protein A1 IDA RGD PMID:15187139 RGD:4144050 NCBI chr16:17,008,180...17,011,686
Ensembl chr16:17,008,180...17,011,685
JBrowse link
G Sftpd surfactant protein D involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:15591410 PMID:21873635 RGD:4144046, RGD:13792537 NCBI chr16:17,046,491...17,058,968
Ensembl chr16:17,046,483...17,059,927
JBrowse link
G Sirpa signal-regulatory protein alpha involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
(MGI:2680858|PMID:14634079)
PMID:21873635
Ensembl
RGD
PMID:14634079 PMID:21873635 GO_REF:0000107 MGI:2680858, RGD:13792537 NCBI chr 3:116,819,730...116,858,099
Ensembl chr 3:116,819,726...116,858,098
JBrowse link
G Sirpd signal-regulatory protein delta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:85,513,484...85,702,291
Ensembl chr 2:85,513,491...85,702,289
JBrowse link
G Slc11a1 solute carrier family 11 member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2446573 (MGI:3807860|PMID:18456389), (MGI:3839054|PMID:18984740)
Ensembl
RGD
PMID:18456389 PMID:18984740 GO_REF:0000107 MGI:3807860 MGI:3839054 NCBI chr 9:75,957,193...75,968,115
Ensembl chr 9:75,957,316...75,968,101
JBrowse link
G Sod1 superoxide dismutase 1 involved_in ISO RNAcentral:URS0000021B51_10090 (MGI:6271924|PMID:25381879) RGD PMID:25381879 MGI:6271924 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:18201371) RGD PMID:18201371 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:29518357)
(MGI:6391511|PMID:31370707), (MGI:6448697|PMID:31902528), (MGI:6695683|PMID:29663649)
RGD PMID:29518357 PMID:29663649 PMID:31370707 PMID:31902528 MGI:6391511 MGI:6448697 MGI:6695683 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
G Tub TUB bipartite transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:19837063)
UniProt
RGD
PMID:19837063 GO_REF:0000024 NCBI chr 1:163,008,198...163,030,958
Ensembl chr 1:162,951,931...163,026,812
JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:19837063) RGD PMID:19837063 NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073
JBrowse link
positive regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:23238794 RGD:8696010 NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078
JBrowse link
G Ano6 anoctamin 6 involved_in ISO (MGI:5634870|PMID:25651887) RGD PMID:25651887 MGI:5634870 NCBI chr 7:126,933,629...127,113,589
Ensembl chr 7:126,933,936...127,113,589
JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in ISO (MGI:6271154|PMID:25568335) RGD PMID:25568335 MGI:6271154 NCBI chr 7:20,135,248...20,184,757
Ensembl chr 7:20,135,375...20,184,754
JBrowse link
G C3 complement C3 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P05555 (MGI:5319446|PMID:22438044), (MGI:5905548|PMID:20199584), (MGI:6189359|PMID:22632727)
Ensembl
RGD
PMID:20199584 PMID:22438044 PMID:22632727 GO_REF:0000107 MGI:5319446 MGI:5905548 MGI:6189359 NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429
JBrowse link
G Cd36 CD36 molecule acts_upstream_of_or_within ISO MGI:2447190 (MGI:3587138|PMID:16061696) RGD PMID:16061696 MGI:3587138 NCBI chr 4:17,317,343...17,410,084 JBrowse link
G F2rl1 F2R like trypsin receptor 1 involved_in ISO (PMID:21501162) RGD PMID:21501162 NCBI chr 2:26,772,274...26,785,226
Ensembl chr 2:26,772,278...26,785,226
JBrowse link
G Fcgr1a Fc fragment of IgG receptor Ia IMP RGD PMID:19657115 RGD:9685698 NCBI chr 2:183,851,075...183,860,077
Ensembl chr 2:183,851,077...183,859,994
JBrowse link
G Gata2 GATA binding protein 2 IMP RGD PMID:12933836 RGD:632788 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
JBrowse link
G Itga2 integrin subunit alpha 2 IMP RGD PMID:9284952 RGD:2307413 NCBI chr 2:46,520,345...46,621,487
Ensembl chr 2:46,523,948...46,621,481
JBrowse link
G Lbp lipopolysaccharide binding protein IDA RGD PMID:11104656 RGD:9685187 NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586
JBrowse link
G Nckap1l NCK associated protein 1 like involved_in ISS
ISO
GO_REF:0000024
(MGI:3818191|PMID:19015308)
UniProt
RGD
PMID:19015308 GO_REF:0000024 MGI:3818191 NCBI chr 7:134,577,443...134,622,934
Ensembl chr 7:134,577,482...134,622,934
JBrowse link
G Plcg2 phospholipase C, gamma 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:32514138)
GO_REF:0000107
RGD
Ensembl
PMID:32514138 GO_REF:0000107 NCBI chr19:45,547,416...45,683,930
Ensembl chr19:45,547,416...45,683,930
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IMP RGD PMID:15940641 RGD:8553017 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Rab31 RAB31, member RAS oncogene family involved_in ISS
ISO
GO_REF:0000024
(MGI:6271154|PMID:25568335)
UniProt
RGD
PMID:25568335 GO_REF:0000024 MGI:6271154 NCBI chr 9:105,246,712...105,382,973
Ensembl chr 9:105,246,709...105,381,253
JBrowse link
G Stap1 signal transducing adaptor family member 1 involved_in ISO (MGI:3831067|PMID:19100238) RGD PMID:19100238 MGI:3831067 NCBI chr14:21,950,466...21,981,395
Ensembl chr14:21,952,496...21,981,245
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in
acts_upstream_of
IBA
ISO
PMID:21873635
(PMID:32514138)
(MGI:6284411|PMID:29752066), (MGI:6304666|PMID:25631124)
(PMID:28855300), (PMID:33097708)
RGD PMID:25631124 PMID:28855300 PMID:29752066 PMID:32514138 PMID:33097708 More... MGI:6284411 MGI:6304666, RGD:13792537 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgm2 transglutaminase 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3580951|PMID:15905580), (MGI:3629478|PMID:12810961)
(PMID:7935379)
UniProt
RGD
PMID:7935379 PMID:12810961 PMID:15905580 GO_REF:0000024 MGI:3580951 MGI:3629478 NCBI chr 3:146,772,684...146,801,924
Ensembl chr 3:146,772,687...146,801,981
JBrowse link
regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase involved_in ISS
ISO
GO_REF:0000024
(MGI:5436199|PMID:22503541), (MGI:5508294|PMID:11278875)
UniProt
RGD
PMID:11278875 PMID:22503541 GO_REF:0000024 MGI:5436199 MGI:5508294 NCBI chr10:55,060,169...55,068,885
Ensembl chr10:55,060,412...55,068,874
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19391
    regulation of biological process 12736
      regulation of cellular process 12198
        regulation of vesicle-mediated transport 637
          regulation of phagocytosis 120
            negative regulation of phagocytosis + 27
            positive regulation of phagocytosis + 86
            regulation of apoptotic cell clearance + 10
            regulation of phagocytosis, engulfment + 20
Path 2
Term Annotations click to browse term
  biological_process 19391
    biological regulation 13476
      regulation of biological process 12736
        regulation of localization 3018
          regulation of transport 1995
            regulation of vesicle-mediated transport 637
              regulation of phagocytosis 120
                negative regulation of phagocytosis + 27
                positive regulation of phagocytosis + 86
                regulation of apoptotic cell clearance + 10
                regulation of phagocytosis, engulfment + 20
paths to the root