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ONTOLOGY REPORT - ANNOTATIONS


Term:stem cell differentiation
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Accession:GO:0048863 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
Synonyms:xref: Wikipedia:Stem_cell_differentiation


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stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A2m alpha-2-macroglobulin acts_upstream_of_or_within ISO (MGI:4367296|PMID:19796622) RGD PMID:19796622 MGI:4367296 NCBI chr 4:154,309,426...154,359,138
Ensembl chr 4:154,309,426...154,359,137
Ensembl chr 4:154,309,426...154,359,137
JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5553039|PMID:24074865)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24074865 GO_REF:0000024 GO_REF:0000107 MGI:5553039 NCBI chr20:11,344,513...11,359,090
Ensembl chr20:11,344,514...11,359,090
JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:5438719|PMID:22768269), (MGI:5448843|PMID:23273992)
UniProt
RGD
PMID:22768269 PMID:23273992 GO_REF:0000024 MGI:5438719 MGI:5448843 NCBI chr 3:113,400,395...113,405,869
Ensembl chr 3:113,401,734...113,405,829
JBrowse link
G Epcam epithelial cell adhesion molecule involved_in ISO (PMID:19785009) RGD PMID:19785009 NCBI chr 6:11,282,194...11,308,870
Ensembl chr 6:11,281,964...11,298,216
JBrowse link
G Epop elongin BC and polycomb repressive complex 2 associated protein involved_in ISO (MGI:5822935|PMID:27863226), (MGI:5822936|PMID:27863225) RGD PMID:27863225 PMID:27863226 MGI:5822935 MGI:5822936 NCBI chr10:85,573,369...85,574,889
Ensembl chr10:85,573,369...85,574,889
JBrowse link
G Esr1 estrogen receptor 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:5634223|PMID:25655704)
Ensembl
RGD
PMID:25655704 GO_REF:0000107 MGI:5634223 NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796
JBrowse link
G Etv4 ETS variant transcription factor 4 acts_upstream_of_or_within ISO MGI:2445834 (MGI:3828920|PMID:18977342) RGD PMID:18977342 MGI:3828920 NCBI chr10:89,685,058...89,700,300
Ensembl chr10:89,685,058...89,700,283
JBrowse link
G Foxo4 forkhead box O4 involved_in ISO (PMID:22972301) RGD PMID:22972301 NCBI chr  X:71,155,284...71,162,158
Ensembl chr  X:71,155,601...71,162,158
JBrowse link
G Gpm6a glycoprotein m6a involved_in ISO
ISS
(PMID:19298174)
GO_REF:0000024
RGD
UniProt
PMID:19298174 GO_REF:0000024 NCBI chr16:39,367,697...39,719,292
Ensembl chr16:39,367,692...39,719,187
JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO (MGI:6451356|PMID:31761678) RGD PMID:31761678 MGI:6451356 NCBI chr16:2,616,538...2,636,708
Ensembl chr16:2,634,603...2,636,708
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:17078040) RGD PMID:17078040 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within ISO (MGI:4367296|PMID:19796622) RGD PMID:19796622 MGI:4367296 NCBI chr 4:82,184,299...82,187,890
Ensembl chr 4:82,183,196...82,186,190
JBrowse link
G Hoxd4 homeo box D4 acts_upstream_of_or_within ISO (MGI:4367296|PMID:19796622) RGD PMID:19796622 MGI:4367296 NCBI chr 3:61,634,005...61,653,581
Ensembl chr 3:61,634,005...61,651,056
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 involved_in ISO (MGI:4431292|PMID:20064375), (MGI:4436818|PMID:20064376), (MGI:4441020|PMID:20075857) RGD PMID:20064375 PMID:20064376 PMID:20075857 MGI:4431292 MGI:4436818 MGI:4441020 NCBI chr17:20,183,440...20,365,219
Ensembl chr17:20,184,245...20,364,714
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO (MGI:3841869|PMID:18258857) RGD PMID:18258857 MGI:3841869 NCBI chr14:35,072,131...35,149,638
Ensembl chr14:35,072,108...35,149,610
JBrowse link
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 acts_upstream_of_or_within ISO MGI:5810650 (MGI:5700289|PMID:22770845) RGD PMID:22770845 MGI:5700289 NCBI chr 7:122,896,860...122,918,025
Ensembl chr 7:122,896,871...122,918,036
JBrowse link
G Lif LIF, interleukin 6 family cytokine involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5448135|PMID:22949634)
Ensembl
RGD
PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr14:84,482,652...84,500,574
Ensembl chr14:84,482,674...84,500,642
JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (MGI:4359358|PMID:18604195), (MGI:4359360|PMID:18292307) RGD PMID:18292307 PMID:18604195 MGI:4359358 MGI:4359360 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Mettl5 methyltransferase like 5 involved_in ISO (MGI:6436417|PMID:32217665) RGD PMID:32217665 MGI:6436417 NCBI chr 3:56,101,597...56,113,823
Ensembl chr 3:56,101,580...56,113,857
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (MGI:3723565|PMID:17693062) RGD PMID:17693062 MGI:3723565 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97168 (MGI:3723565|PMID:17693062)
Ensembl
RGD
PMID:17693062 GO_REF:0000107 MGI:3723565 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in ISO (MGI:4429983|PMID:20144788) RGD PMID:20144788 MGI:4429983 NCBI chr14:2,656,776...2,701,027
Ensembl chr14:2,658,267...2,700,977
JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within IEP
ISO
(MGI:3689688|PMID:16894029), (MGI:4422111|PMID:20123909) RGD PMID:16894029 PMID:20123909, PMID:22211239 MGI:3689688 MGI:4422111, RGD:9589812 NCBI chr 4:155,531,906...155,539,268
Ensembl chr 4:155,531,906...155,539,268
JBrowse link
G Nelfb negative elongation factor complex member B involved_in ISO (MGI:6270977|PMID:25773599) RGD PMID:25773599 MGI:6270977 NCBI chr 3:2,414,448...2,431,148
Ensembl chr 3:2,414,451...2,431,148
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5009359|PMID:20171952)
UniProt
RGD
PMID:20171952 GO_REF:0000024 MGI:5009359 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5009359|PMID:20171952)
UniProt
RGD
PMID:20171952 GO_REF:0000024 MGI:5009359 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 IEP
IMP
RGD PMID:19382247, PMID:18253862 RGD:2311162, RGD:2311168 NCBI chr12:9,496,044...9,501,211
Ensembl chr12:9,496,044...9,501,213
JBrowse link
G Phf19 PHD finger protein 19 involved_in ISO (MGI:5487475|PMID:23160351), (MGI:5487476|PMID:23104054) RGD PMID:23104054 PMID:23160351 MGI:5487475 MGI:5487476 NCBI chr 3:13,957,136...13,978,283
Ensembl chr 3:13,957,136...13,978,224
JBrowse link
G Phf5a PHD finger protein 5A acts_upstream_of_or_within ISO (PMID:27749823) RGD PMID:27749823 NCBI chr 7:123,095,286...123,101,851
Ensembl chr 7:123,095,288...123,101,869
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within
involved_in
ISO (MGI:4422111|PMID:20123909)
(MGI:5476873|PMID:23376973), (MGI:6148490|PMID:29153991)
RGD PMID:20123909 PMID:23376973 PMID:29153991 MGI:4422111 MGI:5476873 MGI:6148490 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Psmd11 proteasome 26S subunit, non-ATPase 11 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22972301)
Ensembl
UniProt
RGD
PMID:22972301 GO_REF:0000024 GO_REF:0000107 NCBI chr10:67,810,655...67,857,562
Ensembl chr10:67,810,655...67,857,223
JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (MGI:5640939|PMID:24412312) RGD PMID:24412312 MGI:5640939 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3723565|PMID:17693062)
Ensembl
RGD
PMID:17693062 GO_REF:0000107 MGI:3723565 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (MGI:5908786|PMID:25242323) RGD PMID:25242323 MGI:5908786 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Setd6 SET domain containing 6, protein lysine methyltransferase involved_in ISS
ISO
GO_REF:0000024
(MGI:5689089|PMID:23324626)
UniProt
RGD
PMID:23324626 GO_REF:0000024 MGI:5689089 NCBI chr19:9,758,613...9,766,333
Ensembl chr19:9,762,489...9,765,484
JBrowse link
G Shc4 SHC adaptor protein 4 acts_upstream_of_or_within ISO (MGI:5474441|PMID:22948967) RGD PMID:22948967 MGI:5474441 NCBI chr 3:117,897,738...117,990,289
Ensembl chr 3:117,897,738...117,990,289
JBrowse link
G Sox10 SRY-box transcription factor 10 IEP RGD PMID:12691661 RGD:1600051 NCBI chr 7:120,393,238...120,403,523
Ensembl chr 7:120,393,254...120,403,523
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO MGI:3717118 (MGI:4422111|PMID:20123909) RGD PMID:20123909 MGI:4422111 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (MGI:4422111|PMID:20123909) RGD PMID:20123909 MGI:4422111 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Sox21 SRY-box transcription factor 21 involved_in ISO (PMID:20876214) RGD PMID:20876214 NCBI chr15:103,438,674...103,441,405
Ensembl chr15:103,440,212...103,441,030
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (MGI:3689688|PMID:16894029) RGD PMID:16894029 MGI:3689688 NCBI chr 4:100,492,796...100,660,401
Ensembl chr 4:100,491,798...100,660,140
JBrowse link
G Vsir V-set immunoregulatory receptor acts_upstream_of_or_within ISO (MGI:5468994|PMID:20042595) RGD PMID:20042595 MGI:5468994 NCBI chr20:29,897,543...29,923,381
Ensembl chr20:29,897,594...29,919,998
JBrowse link
G Zfp281 zinc finger protein 281 involved_in ISO (MGI:5448086|PMID:22988117), (MGI:5448369|PMID:21915945) RGD PMID:21915945 PMID:22988117 MGI:5448086 MGI:5448369 NCBI chr13:53,531,080...53,534,399
Ensembl chr13:53,506,925...53,534,353
JBrowse link
canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (MGI:4413394|PMID:19705442) RGD PMID:19705442 MGI:4413394 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA
ISO
GO_REF:0000107
MGI:2148567|MGI:3841145 (MGI:6284231|PMID:30478225)
Ensembl
RGD
PMID:30478225 GO_REF:0000107 MGI:6284231 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Fzd1 frizzled class receptor 1 involved_in ISO
IEA
(PMID:20039315)
GO_REF:0000107
RGD
Ensembl
PMID:20039315 GO_REF:0000107 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Wnt3 Wnt family member 3 involved_in ISO
IEA
(PMID:20039315)
GO_REF:0000107
RGD
Ensembl
PMID:20039315 GO_REF:0000107 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
cardiac muscle cell myoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isl1 ISL LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:4438134|PMID:19620969) RGD PMID:19620969 MGI:4438134 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Nrg1 neuregulin 1 involved_in ISO (PMID:17336907) RGD PMID:17336907 NCBI chr16:62,969,573...64,065,063
Ensembl chr16:63,837,216...64,057,434
JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:5009770|PMID:21199191)
UniProt
RGD
PMID:21199191 GO_REF:0000024 MGI:5009770 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
cardiac neural crest cell development involved in heart development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (MGI:2179743|PMID:11694877) RGD PMID:11694877 MGI:2179743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO MGI:1346859 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
cardiac neural crest cell development involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (MGI:4849577|PMID:21098571) RGD PMID:21098571 MGI:4849577 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in ISO (MGI:4413411|PMID:19008477) RGD PMID:19008477 MGI:4413411 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:4354447|PMID:19609448)
Ensembl
RGD
PMID:19609448 GO_REF:0000107 MGI:4354447 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4359139|PMID:19509466)
Ensembl
RGD
PMID:19509466 GO_REF:0000107 MGI:4359139 NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (MGI:3805126|PMID:18539270) RGD PMID:18539270 MGI:3805126 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2386570|MGI:3803647 (MGI:4453274|PMID:20144608)
Ensembl
RGD
PMID:20144608 GO_REF:0000107 MGI:4453274 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Nrp1 neuropilin 1 NOT|involved_in ISO (MGI:5693177|PMID:26053665) RGD PMID:26053665 MGI:5693177 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (MGI:2446944|PMID:12464179) RGD PMID:12464179 MGI:2446944 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (MGI:3805126|PMID:18539270) RGD PMID:18539270 MGI:3805126 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
cardioblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin acts_upstream_of_or_within ISO MGI:3774028 (MGI:5293253|PMID:21822279) RGD PMID:21822279 MGI:5293253 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO
ISS
(PMID:15896309)
GO_REF:0000024
RGD
AgBase
PMID:15896309 GO_REF:0000024 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
hematopoietic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:5448499|PMID:22385964)
UniProt
RGD
PMID:22385964 GO_REF:0000024 MGI:5448499 NCBI chr 6:109,562,415...109,584,541
Ensembl chr 6:109,562,587...109,584,545
JBrowse link
G Cdk6 cyclin-dependent kinase 6 acts_upstream_of_or_within ISO MGI:3833563|MGI:5141514 (MGI:5140640|PMID:21508411) RGD PMID:21508411 MGI:5140640 NCBI chr 4:27,781,728...27,969,653
Ensembl chr 4:27,785,647...27,966,398
JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 acts_upstream_of_or_within ISO MGI:3800602 (MGI:3836861|PMID:19137022) RGD PMID:19137022 MGI:3836861 NCBI chr 1:134,757,934...134,873,053
Ensembl chr 1:134,757,934...134,871,167
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183947 (MGI:3715429|PMID:17554309) RGD PMID:17554309 MGI:3715429 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:6406770|PMID:21148566) RGD PMID:21148566 MGI:6406770 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Hoxb4 homeo box B4 involved_in ISO (PMID:18932205) RGD PMID:18932205 NCBI chr10:84,167,331...84,169,913
Ensembl chr10:84,167,331...84,169,907
JBrowse link
G Lmbr1l limb development membrane protein 1-like involved_in ISO (MGI:6303730|PMID:31073040) RGD PMID:31073040 MGI:6303730 NCBI chr 7:140,585,512...140,600,797
Ensembl chr 7:140,585,832...140,600,818
JBrowse link
G Mir125b1 microRNA 125b-1 acts_upstream_of_or_within ISO (MGI:4822501|PMID:20660734) RGD PMID:20660734 MGI:4822501 NCBI chr 8:45,798,260...45,798,346
Ensembl chr 8:45,798,260...45,798,346
JBrowse link
G Mir125b2 microRNA 125b-2 acts_upstream_of_or_within ISO (MGI:4822501|PMID:20660734) RGD PMID:20660734 MGI:4822501 NCBI chr11:16,097,346...16,097,433 JBrowse link
G Mir126a microRNA 126a acts_upstream_of_or_within ISO (MGI:4822501|PMID:20660734) RGD PMID:20660734 MGI:4822501 NCBI chr 3:4,042,464...4,042,581
Ensembl chr 3:4,042,464...4,042,581
JBrowse link
G Mir130a microRNA 130a acts_upstream_of_or_within ISO (MGI:4822501|PMID:20660734) RGD PMID:20660734 MGI:4822501 NCBI chr 3:72,141,037...72,141,124
Ensembl chr 3:72,141,037...72,141,124
JBrowse link
G Mir155 microRNA 155 acts_upstream_of_or_within ISO (MGI:4822501|PMID:20660734) RGD PMID:20660734 MGI:4822501 NCBI chr11:24,176,603...24,176,667
Ensembl chr11:24,176,603...24,176,667
JBrowse link
G Mir181c microRNA 181c acts_upstream_of_or_within ISO (MGI:4822501|PMID:20660734) RGD PMID:20660734 MGI:4822501 NCBI chr19:25,290,211...25,290,316
Ensembl chr19:25,290,211...25,290,316
JBrowse link
G Mir193b microRNA 193b acts_upstream_of_or_within ISO (MGI:4822501|PMID:20660734) RGD PMID:20660734 MGI:4822501 NCBI chr14:30,331,049...30,331,131
Ensembl chr14:30,331,049...30,331,131
JBrowse link
G Mir542 microRNA 542 acts_upstream_of_or_within ISO (MGI:4822501|PMID:20660734) RGD PMID:20660734 MGI:4822501 NCBI chr  X:158,152,146...158,152,224
Ensembl chr  X:158,152,146...158,152,224
JBrowse link
G Mir99a microRNA 99a acts_upstream_of_or_within ISO (MGI:4822501|PMID:20660734) RGD PMID:20660734 MGI:4822501 NCBI chr11:16,052,153...16,052,233
Ensembl chr11:16,052,153...16,052,233
JBrowse link
G Mllt3 MLLT3, super elongation complex subunit involved_in ISO (PMID:31776511) RGD PMID:31776511 NCBI chr 5:106,103,498...106,202,559
Ensembl chr 5:106,103,407...106,207,126
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in ISO
IEA
(PMID:19778523)
GO_REF:0000107
RGD
Ensembl
PMID:19778523 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sp7 Sp7 transcription factor involved_in ISO (PMID:18932205) RGD PMID:18932205 NCBI chr 7:143,957,316...143,967,488
Ensembl chr 7:143,958,858...143,967,484
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2176073|MGI:3046779 (MGI:4848276|PMID:20709909) RGD PMID:20709909 MGI:4848276 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO MGI:2176073|MGI:2450311|MGI:2450743|MGI:2661471 (MGI:3042823|PMID:14726374), (MGI:3580924|PMID:15677556) RGD PMID:14726374 PMID:15677556 MGI:3042823 MGI:3580924 NCBI chr 5:133,864,401...133,878,604
Ensembl chr 5:133,864,798...133,878,830
JBrowse link
G Terc telomerase RNA component acts_upstream_of_or_within ISO MGI:1857930 (MGI:3715429|PMID:17554309) RGD PMID:17554309 MGI:3715429 NCBI chr 2:116,432,723...116,433,110
Ensembl chr 2:116,432,691...116,433,110
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:30146126) RGD PMID:30146126 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5818653|PMID:25952549)
UniProt
RGD
PMID:25952549 GO_REF:0000024 MGI:5818653 NCBI chr 5:39,616,479...39,650,894
Ensembl chr 5:39,615,956...39,650,895
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 acts_upstream_of_or_within ISO MGI:2152542 (MGI:3715429|PMID:17554309) RGD PMID:17554309 MGI:3715429 NCBI chr 9:79,659,275...79,748,050
Ensembl chr 9:79,659,251...79,748,078
JBrowse link
hepatoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggt1 gamma-glutamyltransferase 1 IEP RGD PMID:10934156 RGD:14701049 NCBI chr20:14,019,723...14,045,781
Ensembl chr20:14,019,723...14,025,068
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:3721426 (MGI:3720549|PMID:17580084) RGD PMID:17580084 MGI:3720549 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856 (MGI:3807614|PMID:18635606) RGD PMID:18635606 MGI:3807614 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Krt18 keratin 18 IEP RGD PMID:18484094 RGD:27226811 NCBI chr 7:143,629,455...143,633,131
Ensembl chr 7:143,629,455...143,633,131
JBrowse link
negative regulation of amniotic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rest RE1-silencing transcription factor involved_in ISO
ISS
(PMID:20942606)
GO_REF:0000024
RGD
UniProt
PMID:20942606 GO_REF:0000024 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
negative regulation of cardiac muscle cell myoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO
IEA
(PMID:21199191)
GO_REF:0000107
RGD
Ensembl
PMID:21199191 GO_REF:0000107 NCBI chr 7:134,702,964...134,799,437
Ensembl chr 7:134,702,964...134,722,215
JBrowse link
negative regulation of heart induction by canonical Wnt signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A involved_in ISO (PMID:19736317) RGD PMID:19736317 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
negative regulation of hematopoietic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa9 heat shock protein family A (Hsp70) member 9 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5784980|PMID:21123823)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:21123823 GO_REF:0000024 GO_REF:0000107 MGI:5784980 NCBI chr18:27,731,072...27,749,235
Ensembl chr18:27,731,072...27,749,235
JBrowse link
G N4bp2l2 NEDD4 binding protein 2-like 2 involved_in ISO (PMID:19506020) RGD PMID:19506020 NCBI chr12:627,128...650,604
Ensembl chr12:628,488...650,376
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 involved_in ISO (MGI:5476857|PMID:23434824) RGD PMID:23434824 MGI:5476857 NCBI chr 3:62,497,568...62,525,146
Ensembl chr 3:62,497,571...62,524,996
JBrowse link
G Tcf15 transcription factor 15 involved_in IEA
ISO
GO_REF:0000107
(MGI:6479302|PMID:32669716)
Ensembl
RGD
PMID:32669716 GO_REF:0000107 MGI:6479302 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
negative regulation of mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir154 microRNA 154 acts_upstream_of_or_within ISO (MGI:5705446|PMID:25959411) RGD PMID:25959411 MGI:5705446 NCBI chr 6:133,888,586...133,888,669
Ensembl chr 6:133,888,586...133,888,669
JBrowse link
G Rest RE1-silencing transcription factor involved_in ISO (PMID:18570921) RGD PMID:18570921 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
negative regulation of stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnk cyclin K acts_upstream_of_or_within ISO (MGI:5467199|PMID:22547058) RGD PMID:22547058 MGI:5467199 NCBI chr 6:132,090,235...132,113,560
Ensembl chr 6:132,090,218...132,113,557
JBrowse link
G Cdk12 cyclin-dependent kinase 12 acts_upstream_of_or_within ISO (MGI:5467199|PMID:22547058) RGD PMID:22547058 MGI:5467199 NCBI chr10:86,157,186...86,210,657
Ensembl chr10:86,157,608...86,222,707
JBrowse link
G Cdk13 cyclin-dependent kinase 13 acts_upstream_of_or_within ISO (MGI:5467199|PMID:22547058) RGD PMID:22547058 MGI:5467199 NCBI chr17:49,833,194...49,922,932
Ensembl chr17:49,833,400...49,921,550
JBrowse link
G Esrrb estrogen-related receptor beta involved_in ISS
ISO
GO_REF:0000024
(MGI:5887187|PMID:26206133)
UniProt
RGD
PMID:26206133 GO_REF:0000024 MGI:5887187 NCBI chr 6:110,360,940...110,458,406
Ensembl chr 6:110,410,141...110,455,906
JBrowse link
G H1f8 H1.8 linker histone involved_in ISS
ISO
GO_REF:0000024
(MGI:5559660|PMID:22868987)
UniProt
RGD
PMID:22868987 GO_REF:0000024 MGI:5559660 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:19682396)
Ensembl
RGD
PMID:19682396 GO_REF:0000107 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO
ISS
(PMID:19682396)
GO_REF:0000024
RGD
UniProt
PMID:19682396 GO_REF:0000024 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5908336|PMID:21235343)
(PMID:21235343)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21235343 GO_REF:0000024 GO_REF:0000107 MGI:5908336 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in ISO
IEA
(PMID:19682396)
GO_REF:0000107
RGD
Ensembl
PMID:19682396 GO_REF:0000107 NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
JBrowse link
G Lbh LBH regulator of WNT signaling pathway involved_in ISO (MGI:5634223|PMID:25655704) RGD PMID:25655704 MGI:5634223 NCBI chr 6:24,154,207...24,184,217
Ensembl chr 6:24,160,226...24,181,866
JBrowse link
G Mir125a microRNA 125a acts_upstream_of_or_within ISO MGI:1921298 (MGI:5465045|PMID:22751012) RGD PMID:22751012 MGI:5465045 NCBI chr 1:59,704,827...59,704,911
Ensembl chr 1:59,704,827...59,704,911
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 acts_upstream_of_or_within ISO (MGI:5467164|PMID:22977234) RGD PMID:22977234 MGI:5467164 NCBI chr 3:162,692,176...162,788,582
Ensembl chr 3:162,692,185...162,787,548
JBrowse link
G Nelfb negative elongation factor complex member B involved_in ISO (MGI:3845453|PMID:19340312) RGD PMID:19340312 MGI:3845453 NCBI chr 3:2,414,448...2,431,148
Ensembl chr 3:2,414,451...2,431,148
JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:19682396) RGD PMID:19682396 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO (MGI:5659778|PMID:25335925) RGD PMID:25335925 MGI:5659778 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Trim6 tripartite motif containing 6 involved_in ISO (MGI:5492022|PMID:22328504) RGD PMID:22328504 MGI:5492022 NCBI chr 1:169,410,084...169,423,305
Ensembl chr 1:169,410,115...169,423,283
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO (MGI:4455217|PMID:20516196) RGD PMID:20516196 MGI:4455217 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:32169943)
Ensembl
RGD
PMID:32169943 GO_REF:0000107 NCBI chr 5:150,364,490...150,390,173
Ensembl chr 5:150,365,101...150,390,099
JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (MGI:5500826|PMID:23748442) RGD PMID:23748442 MGI:5500826 NCBI chr 6:7,417,416...7,423,447
Ensembl chr 6:7,417,425...7,421,456
JBrowse link
neural crest cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1096359|MGI:1857891|MGI:2679699 (MGI:3612223|PMID:16368932), (MGI:3703483|PMID:17067568) RGD PMID:16368932 PMID:17067568 MGI:3612223 MGI:3703483 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:4366654|PMID:19793887) RGD PMID:19793887 MGI:4366654 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Cdh2 cadherin 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:6216737|PMID:26750727)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26750727 GO_REF:0000024 GO_REF:0000107 MGI:6216737 NCBI chr18:8,146,971...8,366,037
Ensembl chr18:8,146,971...8,360,684
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within ISO MGI:2679699 (MGI:3703483|PMID:17067568) RGD PMID:17067568 MGI:3703483 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729
JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 acts_upstream_of_or_within ISO MGI:1096359 (MGI:3703483|PMID:17067568) RGD PMID:17067568 MGI:3703483 NCBI chr 1:256,369,410...256,380,649
Ensembl chr 1:256,370,850...256,378,335
JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO MGI:1857637 (MGI:1277800|PMID:9671575), (MGI:3510064|PMID:15327783) RGD PMID:9671575 PMID:15327783 MGI:1277800 MGI:3510064 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G Ednra endothelin receptor type A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857473 (MGI:1201717|PMID:9449664), (MGI:3056210|PMID:15306564), (MGI:3510064|PMID:15327783)
Ensembl
RGD
PMID:9449664 PMID:15306564 PMID:15327783 GO_REF:0000107 MGI:1201717 MGI:3056210 MGI:3510064 NCBI chr19:33,928,356...33,991,703
Ensembl chr19:33,928,356...33,991,703
JBrowse link
G Fam172a family with sequence similarity 172, member A involved_in ISO (MGI:6113784|PMID:29311329) RGD PMID:29311329 MGI:6113784 NCBI chr 2:4,942,795...5,547,744
Ensembl chr 2:4,942,775...5,545,144
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1347481 (MGI:3701735|PMID:16839542) RGD PMID:16839542 MGI:3701735 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (MGI:3701735|PMID:16839542) RGD PMID:16839542 MGI:3701735 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO MGI:1857639 (MGI:1277800|PMID:9671575) RGD PMID:9671575 MGI:1277800 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Kbtbd8 kelch repeat and BTB domain containing 8 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:26399832)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26399832 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:127,164,728...127,177,537
Ensembl chr 4:127,164,453...127,177,477
JBrowse link
G Klhl12 kelch-like family member 12 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27716508)
UniProt
Ensembl
RGD
PMID:27716508 GO_REF:0000024 GO_REF:0000107 NCBI chr13:51,280,933...51,314,753
Ensembl chr13:51,282,684...51,314,797
JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO MGI:1346859 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:26399832)
UniProt
RGD
PMID:26399832 GO_REF:0000024 NCBI chr 1:265,829,055...265,839,819
Ensembl chr 1:265,829,108...265,839,818
JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO
ISS
(PMID:27716508)
GO_REF:0000024
RGD
UniProt
PMID:27716508 GO_REF:0000024 NCBI chr 1:31,576,183...31,591,852
Ensembl chr 1:31,576,183...31,591,849
JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:27716508)
UniProt
RGD
PMID:27716508 GO_REF:0000024 NCBI chr 5:148,320,610...148,343,876
Ensembl chr 5:148,320,438...148,343,886
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:3709664 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:12444107) RGD PMID:12444107 NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:5285157|PMID:20596238)
UniProt
RGD
PMID:20596238 GO_REF:0000024 MGI:5285157 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:3041881 (MGI:3613316|PMID:15691760) RGD PMID:15691760 MGI:3613316 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 involved_in ISO (PMID:26399832) RGD PMID:26399832 NCBI chr18:56,081,863...56,115,719
Ensembl chr18:56,082,195...56,115,593
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (MGI:80519|PMID:8622766) RGD PMID:8622766 MGI:80519 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
neural crest cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:5907444|PMID:26295701) RGD PMID:26295701 MGI:5907444 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO (PMID:10654605) RGD PMID:10654605 NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772
JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in ISS
ISO
GO_REF:0000024
(MGI:707955|PMID:9165122)
UniProt
RGD
PMID:9165122 GO_REF:0000024 MGI:707955 NCBI chr 9:93,112,781...93,130,135
Ensembl chr 9:93,112,805...93,125,014
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in IBA
ISO
PMID:21873635
(PMID:11029007)
RGD PMID:11029007, PMID:21873635 RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(MGI:5049797|PMID:21610032)
UniProt
RGD
PMID:21610032 GO_REF:0000024 MGI:5049797 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:4366654|PMID:19793887)
Ensembl
RGD
PMID:19793887 GO_REF:0000107 MGI:4366654 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Wnt10a Wnt family member 10A acts_upstream_of_or_within ISO (MGI:3712614|PMID:17286598) RGD PMID:17286598 MGI:3712614 NCBI chr 9:82,053,581...82,066,047
Ensembl chr 9:82,053,581...82,066,047
JBrowse link
neural crest cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3045799 (MGI:4437369|PMID:20130188)
Ensembl
RGD
PMID:20130188 GO_REF:0000107 MGI:4437369 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsc goosecoid homeobox involved_in ISO (PMID:24290375) RGD PMID:24290375 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220
JBrowse link
neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2651395 (MGI:3045641|PMID:15226263)
Ensembl
RGD
PMID:15226263 GO_REF:0000107 MGI:3045641 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Alx1 ALX homeobox 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458
JBrowse link
G Anxa6 annexin A6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:40,320,581...40,375,605
Ensembl chr10:40,320,581...40,375,605
JBrowse link
G Cfl1 cofilin 1 acts_upstream_of_or_within ISO MGI:3574399 (MGI:3530675|PMID:15649475) RGD PMID:15649475 MGI:3530675 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
G Coro1c coronin 1C involved_in IBA
ISO
PMID:21873635
(PMID:25074804)
RGD PMID:25074804, PMID:21873635 RGD:13792537 NCBI chr12:48,481,741...48,554,054
Ensembl chr12:48,481,750...48,554,052
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (MGI:1267304|PMID:9624616) RGD PMID:9624616 MGI:1267304 NCBI chr 3:172,856,730...172,879,276
Ensembl chr 3:172,856,733...172,880,450
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within ISO (MGI:1349495|PMID:10591209) RGD PMID:10591209 MGI:1349495 NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3039290 (MGI:3037600|PMID:15037550)
Ensembl
RGD
PMID:15037550 GO_REF:0000107 MGI:3037600 NCBI chr  X:68,891,227...68,904,034
Ensembl chr  X:68,891,227...68,904,038
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:1352955|PMID:10655590)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:10655590 GO_REF:0000024 GO_REF:0000107 MGI:1352955 NCBI chr 9:75,021,790...76,178,936
Ensembl chr 9:75,021,790...75,528,644
JBrowse link
G Fgf19 fibroblast growth factor 19 acts_upstream_of_or_within ISO MGI:3044957 (MGI:3575218|PMID:15789410) RGD PMID:15789410 MGI:3575218 NCBI chr 1:218,058,405...218,061,693
Ensembl chr 1:218,058,405...218,061,693
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (MGI:3588904|PMID:15996652), (MGI:4358009|PMID:19700621), (MGI:5478665|PMID:23144817) RGD PMID:15996652 PMID:19700621 PMID:23144817 MGI:3588904 MGI:4358009 MGI:5478665 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15242795)
Ensembl
UniProt
RGD
PMID:15242795 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2179429 (MGI:3607736|PMID:14659802)
Ensembl
RGD
PMID:14659802 GO_REF:0000107 MGI:3607736 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:707955|PMID:9165122)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:9165122 GO_REF:0000024 GO_REF:0000107 MGI:707955 NCBI chr 9:93,112,781...93,130,135
Ensembl chr 9:93,112,805...93,125,014
JBrowse link
G Isl1 ISL LIM homeobox 1 acts_upstream_of_or_within ISO MGI:108075 (MGI:3640718|PMID:16687132) RGD PMID:16687132 MGI:3640718 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (MGI:1934508|PMID:11401406) RGD PMID:11401406 MGI:1934508 NCBI chr 7:42,269,784...42,351,054
Ensembl chr 7:42,269,784...42,351,054
JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO MGI:1934917 (MGI:3611396|PMID:16316641) RGD PMID:16316641 MGI:3611396 NCBI chr 3:175,553,042...175,601,112
Ensembl chr 3:175,553,045...175,601,127
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO MGI:2137037 (MGI:3613099|PMID:16319111) RGD PMID:16319111 MGI:3613099 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Nrtn neurturin involved_in ISO (PMID:15242795) RGD PMID:15242795 NCBI chr 9:10,299,881...10,306,599
Ensembl chr 9:10,305,470...10,306,597
JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO MGI:3522498 (MGI:3618450|PMID:16423343) RGD PMID:16423343 MGI:3618450 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:3043030 (MGI:3056222|PMID:15384171) RGD PMID:15384171 MGI:3056222 NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
JBrowse link
G Pax6 paired box 6 IMP RGD PMID:9079035 RGD:8552342 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in IBA
ISO
PMID:21873635
(MGI:5302129|PMID:22215812)
RGD PMID:22215812, PMID:21873635 MGI:5302129, RGD:13792537 NCBI chr 5:150,533,895...150,609,423
Ensembl chr 5:150,546,430...150,609,352
JBrowse link
G Radil Rap associating with DIL domain involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:14,092,541...14,156,704
Ensembl chr12:14,092,541...14,156,704
JBrowse link
G Ret ret proto-oncogene acts_upstream_of_or_within ISO MGI:2449909 (MGI:3617928|PMID:15242795) RGD PMID:15242795 MGI:3617928 NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
JBrowse link
G Sema3a semaphorin 3A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Sema3b semaphorin 3B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:116,353,791...116,362,655
Ensembl chr 8:116,354,073...116,361,343
JBrowse link
G Sema3c semaphorin 3C involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2150759 (MGI:2149435|PMID:11688556)
RGD PMID:11688556, PMID:21873635 MGI:2149435, RGD:13792537 NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
JBrowse link
G Sema3d semaphorin 3D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:19,224,378...19,413,519
Ensembl chr 4:19,224,310...19,413,484
JBrowse link
G Sema3e semaphorin 3E involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:17,314,745...17,594,659
Ensembl chr 4:17,272,511...17,594,598
JBrowse link
G Sema3f semaphorin 3F involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2670663 (MGI:3613099|PMID:16319111)
RGD PMID:16319111, PMID:21873635 MGI:3613099, RGD:13792537 NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
JBrowse link
G Sema3g semaphorin 3G involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:7,303,582...7,315,214
Ensembl chr16:7,303,578...7,315,390
JBrowse link
G Sema4a semaphorin 4A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:187,799,568...187,823,014
Ensembl chr 2:187,799,568...187,822,997
JBrowse link
G Sema4b semaphorin 4B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,986,145...142,014,400
Ensembl chr 1:141,986,145...142,014,398
JBrowse link
G Sema4c semaphorin 4C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:43,129,413...43,140,442
Ensembl chr 9:43,129,415...43,139,870
JBrowse link
G Sema4d semaphorin 4D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:13,516,276...13,538,513
Ensembl chr17:13,488,376...13,553,974
JBrowse link
G Sema4f ssemaphorin 4F involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:113,738,225...113,764,532
Ensembl chr 4:113,738,226...113,764,532
JBrowse link
G Sema4g semaphorin 4G involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:264,738,935...264,753,399
Ensembl chr 1:264,741,911...264,753,397
JBrowse link
G Sema5a semaphorin 5A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:85,377,318...85,808,970
Ensembl chr 2:85,377,318...85,808,970
JBrowse link
G Sema5b semaphorin 5B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:68,304,844...68,435,109
Ensembl chr11:68,306,659...68,349,238
JBrowse link
G Sema6a semaphorin 6A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:41,330,519...41,451,813
Ensembl chr18:41,333,551...41,389,510
JBrowse link
G Sema6b semaphorin 6B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:10,934,273...10,951,252
Ensembl chr 9:10,941,613...10,951,252
JBrowse link
G Sema6c semaphorin 6C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:196,330,777...196,347,218
Ensembl chr 2:196,334,626...196,344,008
JBrowse link
G Sema6d semaphorin 6D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:116,899,906...116,958,059
Ensembl chr 3:116,899,878...116,958,050
JBrowse link
G Sema7a semaphorin 7A (John Milton Hagen blood group) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:62,723,788...62,746,530
Ensembl chr 8:62,723,788...62,745,868
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:1857796 (MGI:3583396|PMID:15936751)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15936751 GO_REF:0000024 GO_REF:0000107 MGI:3583396 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:101791 (MGI:3640718|PMID:16687132)
Ensembl
RGD
PMID:16687132 GO_REF:0000107 MGI:3640718 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Sox10 SRY-box transcription factor 10 involved_in IBA
ISO
PMID:21873635
(MGI:3527299|PMID:15572147)
RGD PMID:15572147, PMID:21873635 MGI:3527299, RGD:13792537 NCBI chr 7:120,393,238...120,403,523
Ensembl chr 7:120,393,254...120,403,523
JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:3527299|PMID:15572147)
UniProt
RGD
PMID:15572147 GO_REF:0000024 MGI:3527299 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179190|MGI:2179191 (MGI:3530686|PMID:15652707), (MGI:4822099|PMID:20501333)
UniProt
RGD
PMID:15652707 PMID:20501333 GO_REF:0000024 MGI:3530686 MGI:4822099 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387501 (MGI:2450818|PMID:12522767) RGD PMID:12522767 MGI:2450818 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
neural crest cell migration involved in autonomic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fn1 fibronectin 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:26571399)
Ensembl
RGD
PMID:26571399 GO_REF:0000107 NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129) RGD PMID:18356247 PMID:19325129 PMID:19386662 MGI:3788968 MGI:3848580 MGI:5567908 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662) RGD PMID:18356247 PMID:19386662 MGI:3788968 MGI:3848580 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Phox2b paired-like homeobox 2b involved_in ISO (MGI:1337891|PMID:10360575) RGD PMID:10360575 MGI:1337891 NCBI chr14:42,711,169...42,718,707
Ensembl chr14:42,714,315...42,717,010
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129) RGD PMID:18356247 PMID:19325129 PMID:19386662 MGI:3788968 MGI:3848580 MGI:5567908 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
JBrowse link
neural crest cell migration involved in heart formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
JBrowse link
neural crest cell migration involved in sympathetic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sema3a semaphorin 3A involved_in ISO (MGI:5567908|PMID:19325129) RGD PMID:19325129 MGI:5567908 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P23359 (MGI:5502250|PMID:23863481)
Ensembl
RGD
PMID:23863481 GO_REF:0000107 MGI:5502250 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P21275 (MGI:5502250|PMID:23863481) RGD PMID:23863481 MGI:5502250 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Sema3c semaphorin 3C involved_in ISO (MGI:5693177|PMID:26053665) RGD PMID:26053665 MGI:5693177 NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
JBrowse link
positive regulation of cardioblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in ISS
ISO
GO_REF:0000024
(MGI:6201954|PMID:26489465)
UniProt
RGD
PMID:26489465 GO_REF:0000024 MGI:6201954 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16137232) RGD PMID:16137232 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gata6 GATA binding protein 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16137232)
Ensembl
RGD
PMID:16137232 GO_REF:0000107 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in IEA
ISO
GO_REF:0000107
(MGI:3784761|PMID:11889119)
Ensembl
RGD
PMID:11889119 GO_REF:0000107 MGI:3784761 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Tbx5 T-box transcription factor 5 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:11431700)
UniProt
Ensembl
RGD
PMID:11431700 GO_REF:0000024 GO_REF:0000107 NCBI chr12:42,059,688...42,148,226
Ensembl chr12:42,097,626...42,148,146
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:15896309)
AgBase
RGD
PMID:15896309 GO_REF:0000024 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
positive regulation of hematopoietic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 involved_in ISO (MGI:5569870|PMID:24590069) RGD PMID:24590069 MGI:5569870 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
positive regulation of mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ltbp3 latent transforming growth factor beta binding protein 3 involved_in ISO (PMID:18672106) RGD PMID:18672106 NCBI chr 1:221,099,155...221,116,096
Ensembl chr 1:221,099,998...221,116,096
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO (PMID:21401405) RGD PMID:21401405 NCBI chr 4:178,062,267...179,031,991
Ensembl chr 4:178,066,165...178,441,547
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO (PMID:21401405) RGD PMID:21401405 NCBI chr 1:185,631,702...186,186,192
Ensembl chr 1:185,673,177...186,182,829
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:21401405)
GO_REF:0000024
RGD
UniProt
PMID:21401405 GO_REF:0000024 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
positive regulation of stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsk3b glycogen synthase kinase 3 beta acts_upstream_of_or_within ISO (MGI:5319061|PMID:22064483) RGD PMID:22064483 MGI:5319061 NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
JBrowse link
G Hoxb4 homeo box B4 involved_in ISO (PMID:18932205) RGD PMID:18932205 NCBI chr10:84,167,331...84,169,913
Ensembl chr10:84,167,331...84,169,907
JBrowse link
G Mir100 microRNA 100 acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489) RGD PMID:20439489 MGI:4822296 NCBI chr 8:45,746,948...45,747,027
Ensembl chr 8:45,746,948...45,747,027
JBrowse link
G Mir137 microRNA 137 acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489) RGD PMID:20439489 MGI:4822296 NCBI chr 2:221,658,106...221,658,207
Ensembl chr 2:221,658,106...221,658,207
JBrowse link
G Mir34a microRNA 34a acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489) RGD PMID:20439489 MGI:4822296 NCBI chr 5:167,092,491...167,092,592
Ensembl chr 5:167,092,491...167,092,592
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO
GO_REF:0000024
(MGI:6110185|PMID:29249356)
UniProt
RGD
PMID:29249356 GO_REF:0000024 MGI:6110185 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
G Ptn pleiotrophin involved_in ISS
ISO
GO_REF:0000024
(MGI:3045656|PMID:15121180)
UniProt
RGD
PMID:15121180 GO_REF:0000024 MGI:3045656 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Pwp1 PWP1 homolog, endonuclein acts_upstream_of_or_within ISO (MGI:5659778|PMID:25335925) RGD PMID:25335925 MGI:5659778 NCBI chr 7:23,988,776...24,004,774
Ensembl chr 7:23,988,776...24,004,774
JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:26990106) RGD PMID:26990106 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Sp7 Sp7 transcription factor involved_in ISO (PMID:18932205) RGD PMID:18932205 NCBI chr 7:143,957,316...143,967,488
Ensembl chr 7:143,958,858...143,967,484
JBrowse link
G Tacstd2 tumor-associated calcium signal transducer 2 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
(MGI:5440097|PMID:23070813)
PMID:21873635
Ensembl
RGD
PMID:23070813, PMID:21873635 GO_REF:0000107 MGI:5440097, RGD:13792537 NCBI chr 4:98,341,187...98,342,887
Ensembl chr 4:98,341,188...98,342,887
JBrowse link
G Tcf15 transcription factor 15 involved_in IEA
ISO
GO_REF:0000107
(MGI:6508503|PMID:23395635)
Ensembl
RGD
PMID:23395635 GO_REF:0000107 MGI:6508503 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
G Vsir V-set immunoregulatory receptor acts_upstream_of_or_within ISO MGI:2676809 (MGI:5465045|PMID:22751012) RGD PMID:22751012 MGI:5465045 NCBI chr20:29,897,543...29,923,381
Ensembl chr20:29,897,594...29,919,998
JBrowse link
positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (MGI:5315691|PMID:18545679) RGD PMID:18545679 MGI:5315691 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Myocd myocardin involved_in ISO
IEA
(PMID:15907818)
GO_REF:0000107
RGD
Ensembl
PMID:15907818 GO_REF:0000107 NCBI chr10:51,682,053...51,781,458
Ensembl chr10:51,683,540...51,778,986
JBrowse link
G Srf serum response factor involved_in ISO UniProtKB:Q9JM73 (PMID:19783823)
(MGI:5009475|PMID:19783823)
RGD PMID:19783823 MGI:5009475 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Tbxt T-box transcription factor T involved_in ISO (PMID:21632880)
(MGI:5307952|PMID:21632880)
RGD PMID:21632880 MGI:5307952 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eng endoglin NOT|involved_in ISO (MGI:3721185|PMID:17628518) RGD PMID:17628518 MGI:3721185 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
regulation of hematopoietic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk6 cyclin-dependent kinase 6 acts_upstream_of_or_within ISO MGI:3053975 (MGI:5636128|PMID:25342715) RGD PMID:25342715 MGI:5636128 NCBI chr 4:27,781,728...27,969,653
Ensembl chr 4:27,785,647...27,966,398
JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5487705|PMID:23403623)
UniProt
RGD
PMID:23403623 GO_REF:0000024 MGI:5487705 NCBI chr 6:1,428,845...1,466,193
Ensembl chr 6:1,428,834...1,466,201
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (MGI:6414739|PMID:32103174) RGD PMID:32103174 MGI:6414739 NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:29628141) RGD PMID:29628141 NCBI chr 4:7,889,727...7,931,357
Ensembl chr 4:7,889,869...7,930,706
JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase involved_in ISO (PMID:27141965) RGD PMID:27141965 NCBI chr 1:199,222,584...199,247,993
Ensembl chr 1:199,225,100...199,247,988
JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 involved_in ISO (MGI:6316688|PMID:30065315), (MGI:6317061|PMID:30150673) RGD PMID:30065315 PMID:30150673 MGI:6316688 MGI:6317061 NCBI chr 5:150,364,490...150,390,173
Ensembl chr 5:150,365,101...150,390,099
JBrowse link
regulation of mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir21 microRNA 21 IMP RGD PMID:27798620 RGD:41404703 NCBI chr10:73,902,210...73,902,301
Ensembl chr10:73,902,210...73,902,301
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:21596750)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21596750 GO_REF:0000024 GO_REF:0000107 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
JBrowse link
regulation of neural crest cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A NOT|involved_in ISO (MGI:3040576|PMID:15073157) RGD PMID:15073157 MGI:3040576 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
regulation of neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A NOT|involved_in ISO (MGI:3040576|PMID:15073157) RGD PMID:15073157 MGI:3040576 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
regulation of stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589287 (MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:3528782 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Kdm3a lysine demethylase 3A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3759699|PMID:17938240)
Ensembl
RGD
PMID:17938240 GO_REF:0000107 MGI:3759699 NCBI chr 4:99,503,160...99,547,315
Ensembl chr 4:99,503,176...99,546,905
JBrowse link
G Kdm4c lysine demethylase 4C acts_upstream_of_or_within ISO (MGI:3759699|PMID:17938240) RGD PMID:17938240 MGI:3759699 NCBI chr 5:90,800,139...91,012,662
Ensembl chr 5:90,800,082...91,012,659
JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (MGI:5304206|PMID:22144916) RGD PMID:22144916 MGI:5304206 NCBI chr 1:36,295,650...36,319,906
Ensembl chr 1:36,295,650...36,319,966
JBrowse link
G Ociad1 OCIA domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5908327|PMID:23972987)
UniProt
RGD
PMID:23972987 GO_REF:0000024 MGI:5908327 NCBI chr14:37,458,023...37,475,485
Ensembl chr14:37,458,029...37,475,418
JBrowse link
G Prdm4 PR/SET domain 4 involved_in IMP PMID:23048031 ParkinsonsUK-UCL PMID:23048031 RGD:10054084 NCBI chr 7:23,959,932...23,986,535
Ensembl chr 7:23,960,378...23,985,525
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (MGI:5317256|PMID:21385842) RGD PMID:21385842 MGI:5317256 NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
JBrowse link
regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 involved_in ISO (MGI:4947514|PMID:20007915) RGD PMID:20007915 MGI:4947514 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in ISO (MGI:5298073|PMID:21311046) RGD PMID:21311046 MGI:5298073 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:3487212 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link
respiratory basal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa1 forkhead box A1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2653543 (MGI:3613241|PMID:16214823)
Ensembl
RGD
PMID:16214823 GO_REF:0000107 MGI:3613241 NCBI chr 6:78,516,579...78,549,669
Ensembl chr 6:78,545,804...78,549,669
JBrowse link
squamous basal epithelial stem cell differentiation involved in prostate gland acinus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3044679 (MGI:3703455|PMID:17215304) RGD PMID:17215304 MGI:3703455 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934580 (MGI:3487217|PMID:15371309) RGD PMID:15371309 MGI:3487217 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
stem cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISO (MGI:2667422|PMID:12843296) RGD PMID:12843296 MGI:2667422 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Msi2 musashi RNA-binding protein 2 involved_in ISO (MGI:2450014|PMID:12407178) RGD PMID:12407178 MGI:2450014 NCBI chr10:75,673,840...76,040,106
Ensembl chr10:75,681,393...76,039,964
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:55,061,561...55,174,150
Ensembl chr13:55,061,562...55,173,692
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in ISS
ISO
GO_REF:0000024
(MGI:2667422|PMID:12843296)
UniProt
RGD
PMID:12843296 GO_REF:0000024 MGI:2667422 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:12843296) RGD PMID:12843296 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (MGI:2667422|PMID:12843296) RGD PMID:12843296 MGI:2667422 NCBI chr 7:126,423,418...126,465,724
Ensembl chr 7:126,420,656...126,465,723
JBrowse link
stem cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (MGI:4453910|PMID:20228271) RGD PMID:20228271 MGI:4453910 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:4453910|PMID:20228271) RGD PMID:20228271 MGI:4453910 NCBI chr 3:177,177,237...177,179,039
Ensembl chr 3:177,177,310...177,179,127
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19634
    developmental process 6783
      cellular developmental process 4449
        cell differentiation 4353
          stem cell differentiation 238
            angioblast cell differentiation 0
            cardioblast differentiation + 19
            hematopoietic stem cell differentiation + 35
            hepatoblast differentiation 3
            limb basal epidermal cell differentiation + 0
            mesenchymal stem cell differentiation + 12
            negative regulation of stem cell differentiation + 27
            neural crest cell differentiation + 96
            positive regulation of stem cell differentiation + 24
            regulation of stem cell differentiation + 65
            respiratory basal cell differentiation 1
            squamous basal epithelial stem cell differentiation involved in prostate gland acinus development 2
            stem cell development + 94
            stem cell fate commitment + 5
paths to the root