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ONTOLOGY REPORT - ANNOTATIONS


Term:formation of anatomical boundary
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Accession:GO:0048859 term browser browse the term
Definition:The process in which the limits of an anatomical structure are generated. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.



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formation of anatomical boundary term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:3611720 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857796 (MGI:1277744|PMID:9731532)
Ensembl
RGD
PMID:9731532 GO_REF:0000107 MGI:1277744 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858049 (MGI:1195384|PMID:9420335)
Ensembl
RGD
PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1856158 (MGI:892757|PMID:9169845)
Ensembl
RGD
PMID:9169845 GO_REF:0000107 MGI:892757 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 involved_in ISO
IEA
(MGI:3578570|PMID:15857913)
GO_REF:0000107
RGD
Ensembl
PMID:15857913 GO_REF:0000107 MGI:3578570 NCBI chr 5:121,691,370...121,828,035
Ensembl chr 5:121,691,393...121,827,992
JBrowse link
sensory organ boundary specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntf4 neurotrophin 4 involved_in
acts_upstream_of_or_within
ISS
ISO
PMID:10479455
MGI:1933845 (MGI:1345538|PMID:10479455)
RGD PMID:10479455 PMID:10479455 MGI:1345538, RGD:8554019 NCBI chr 1:95,893,560...95,896,391
Ensembl chr 1:95,893,457...95,897,243
JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IDA RGD PMID:25281935 RGD:12832757 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20328
    developmental process 7023
      anatomical structure formation involved in morphogenesis 1374
        formation of anatomical boundary 7
          equator specification 0
          forebrain-midbrain boundary formation 1
          formation of a compartment boundary 0
          formation of animal organ boundary + 1
          formation of plant organ boundary + 0
          hindbrain-spinal cord boundary formation 0
          midbrain-hindbrain boundary initiation 1
          rhombomere boundary formation 0
          zona limitans intrathalamica formation 1
Path 2
Term Annotations click to browse term
  biological_process 20328
    developmental process 7023
      anatomical structure development 6530
        anatomical structure morphogenesis 2993
          anatomical structure formation involved in morphogenesis 1374
            formation of anatomical boundary 7
              equator specification 0
              forebrain-midbrain boundary formation 1
              formation of a compartment boundary 0
              formation of animal organ boundary + 1
              formation of plant organ boundary + 0
              hindbrain-spinal cord boundary formation 0
              midbrain-hindbrain boundary initiation 1
              rhombomere boundary formation 0
              zona limitans intrathalamica formation 1
paths to the root