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ONTOLOGY REPORT - ANNOTATIONS


Term:neural nucleus development
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Accession:GO:0048857 term browser browse the term
Definition:The biological process whose specific outcome is the progression of a neural nucleus from its initial condition to its mature state. A neural nucleus is an anatomical structure consisting of a discrete aggregate of neuronal soma.


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neural nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO (MGI:85074|PMID:9012503) MGI PMID:9012503 MGI:85074 NCBI chrNW_004936490:12,841,286...12,843,782 JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) UniProt PMID:11872605 NCBI chrNW_004936589:4,120,162...4,661,258 JBrowse link
cochlear nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (MGI:1891561|PMID:11027399) MGI PMID:11027399 MGI:1891561 NCBI chrNW_004936497:2,209,136...2,373,580 JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chrNW_004936470:8,349,175...8,370,099 JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chrNW_004936563:676,564...772,877 JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chrNW_004936473:18,550,489...18,645,470 JBrowse link
facial nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO (MGI:62658|PMID:8102800) MGI PMID:8102800 MGI:62658 NCBI chrNW_004936478:3,721,662...3,724,471 JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within ISO (MGI:83677|PMID:8898234) MGI PMID:8898234 MGI:83677 NCBI chrNW_004936490:12,853,983...12,855,428 JBrowse link
globus pallidus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox acts_upstream_of_or_within ISO (MGI:3709215|PMID:17460091) MGI PMID:17460091 MGI:3709215 NCBI chrNW_004936836:295,090...306,756 JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 ISO RGD PMID:10482766 RGD:9685780 NCBI chrNW_004936528:1,351,687...1,393,926 JBrowse link
G Kcnc2 potassium voltage-gated channel subfamily C member 2 ISO RGD PMID:10482766 RGD:9685780 NCBI chrNW_004936568:3,508,212...3,694,459 JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:11854319)
(MGI:4437145|PMID:20181579)
UniProt
MGI
PMID:11854319 PMID:20181579 MGI:4437145 NCBI chrNW_004936494:10,517,488...10,520,567 JBrowse link
lateral geniculate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (MGI:3721829|PMID:12097474) MGI PMID:12097474 MGI:3721829 NCBI chrNW_004936580:4,165,255...4,179,285 JBrowse link
locus ceruleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired like homeobox 2A acts_upstream_of_or_within ISO (MGI:86465|PMID:9115735)
(MGI:4849589|PMID:21068058)
MGI PMID:9115735 PMID:21068058 MGI:4849589 MGI:86465 NCBI chrNW_004936498:1,539,939...1,544,469 JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within ISO (MGI:3701419|PMID:17207476) MGI PMID:17207476 MGI:3701419 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
principal sensory nucleus of trigeminal nerve development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kirrel3 kirre like nephrin family adhesion molecule 3 acts_upstream_of_or_within ISO (MGI:4949565|PMID:21241806) MGI PMID:21241806 MGI:4949565 NCBI chrNW_004936572:5,763,098...5,797,410 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Nfib nuclear factor I B involved_in ISO (MGI:5284754|PMID:19107796) UniProt PMID:19107796 MGI:5284754 NCBI chrNW_004936539:7,763,036...8,185,001 JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) UniProt PMID:11872605 NCBI chrNW_004936589:4,120,162...4,661,258 JBrowse link
retrotrapezoid nucleus neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2b paired like homeobox 2B involved_in ISO (MGI:4418003|PMID:19940179) BHF-UCL PMID:19940179 MGI:4418003 NCBI chrNW_004936482:8,972,433...8,975,284 JBrowse link
substantia nigra development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin beta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936765:667,107...670,627 JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936690:120,572...135,509 JBrowse link
G Atp5pf ATP synthase peripheral stalk subunit F6 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936640:1,916,711...1,924,823 JBrowse link
G Basp1 brain abundant membrane attached signal protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936480:19,695,949...19,812,681 JBrowse link
G Calm1 calmodulin 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936488:17,580,425...17,588,480 JBrowse link
G Calm2 calmodulin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936508:5,207,909...5,223,780 JBrowse link
G Calm3 calmodulin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936664:471,446...480,858 JBrowse link
G Ccdc14 coiled-coil domain containing 14 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936725:1,273,984...1,331,096 JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936474:7,556,765...7,598,687 JBrowse link
G Ckb creatine kinase B involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936621:1,612,398...1,615,821 JBrowse link
G Dynll1 dynein light chain LC8-type 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936668:451,846...484,841 JBrowse link
G Eno3 enolase 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936677:2,754,117...2,760,992 JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936720:282,291...316,629 JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:3696489|PMID:17234579) MGI PMID:17234579 MGI:3696489 NCBI chrNW_004936477:21,591,772...21,606,289 JBrowse link
G G6pd glucose-6-phosphate dehydrogenase involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936809:1,269,900...1,285,853 JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936601:5,415,857...5,435,964 JBrowse link
G Gnb4 G protein subunit beta 4 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936566:3,690,338...3,732,814 JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936487:13,348,465...13,352,717 JBrowse link
G Ina internexin neuronal intermediate filament protein alpha involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936600:2,747,649...2,760,517 JBrowse link
G Ldha lactate dehydrogenase A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936528:866,607...879,977 JBrowse link
G LOC101958597 myelin basic protein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936616:2,082,154...2,159,028 JBrowse link
G LOC101962838 2',3'-cyclic nucleotide 3' phosphodiesterase involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936490:16,834,570...16,841,734 JBrowse link
G LOC101972214 cytochrome c oxidase subunit 6B1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936543:399,447...399,911 JBrowse link
G Mag myelin associated glycoprotein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936570:989,743...1,004,820 JBrowse link
G Maob monoamine oxidase B involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936502:9,907,181...10,014,756 JBrowse link
G Mapkap1 MAPK associated protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936487:13,511,632...13,743,022 JBrowse link
G Ndrg2 NDRG family member 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936880:219,131...227,856 JBrowse link
G Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936562:1,667,780...1,674,670 JBrowse link
G Padi2 peptidyl arginine deiminase 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936474:4,033,703...4,066,468 JBrowse link
G Plp1 proteolipid protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936499:10,534,953...10,553,411 JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936518:6,620,325...6,626,328 JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936529:1,000,050...1,045,655 JBrowse link
G S100a1 S100 calcium binding protein A1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936580:3,429,697...3,433,567 JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936669:1,344,019...1,375,483 JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936661:1,828,868...1,849,892 JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936668:2,078,783...2,113,154 JBrowse link
G Syngr3 synaptogyrin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936694:2,043,646...2,047,897 JBrowse link
G Sypl2 synaptophysin like 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936704:956,589...970,957 JBrowse link
G Ttbk1 tau tubulin kinase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936476:16,686,513...16,725,750 JBrowse link
G Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936538:7,518,283...7,558,458 JBrowse link
G Ywhah tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936755:1,597,487...1,608,915 JBrowse link
G Ywhaq tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936532:5,931,677...5,938,569 JBrowse link
G Znf148 zinc finger protein 148 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chrNW_004936725:6,968...89,762 JBrowse link
subthalamic nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:3790896|PMID:18206388) MGI PMID:18206388 MGI:3790896 NCBI chrNW_004936563:1,713,294...1,732,431 JBrowse link
superior olivary nucleus maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 acts_upstream_of_or_within ISO (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chrNW_004936538:2,411,194...2,415,106 JBrowse link
G Cdk5r2 cyclin dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chrNW_004936569:1,381,101...1,383,593 JBrowse link
vestibular nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:3621705|PMID:12885554) MGI PMID:12885554 MGI:3621705 NCBI chrNW_004936492:11,315,929...11,317,166 JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO (MGI:3625254|PMID:11223304) MGI PMID:11223304 MGI:3625254 NCBI chrNW_004936500:7,998,464...8,007,848 JBrowse link
G LOC101960999 voltage-dependent P/Q-type calcium channel subunit alpha-1A acts_upstream_of_or_within ISO (MGI:77774|PMID:8719615) MGI PMID:8719615 MGI:77774 NCBI chrNW_004936659:2,201,606...2,269,625 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12130
    developmental process 5716
      anatomical structure development 5344
        neural nucleus development 68
          abducens nucleus development 0
          caudate nucleus development 1
          cochlear nucleus development + 4
          dentate nucleus development 0
          dorsal motor nucleus of vagus nerve development + 0
          emboliform nucleus development 0
          facial nucleus development 2
          fastigial nucleus development 0
          globose nucleus development 0
          globus pallidus development 4
          hypoglossal nucleus development 0
          inferior olivary nucleus development + 0
          inferior raphe nucleus development 0
          inferior reticular formation development 0
          lateral geniculate nucleus development 1
          lateral reticular nucleus development 0
          locus ceruleus development + 1
          nucleus accumbens development 1
          nucleus ambiguus development 0
          putamen development 1
          retrotrapezoid nucleus development + 1
          salivary nucleus development + 0
          solitary nucleus development 0
          substantia nigra development 43
          subthalamic nucleus development 1
          superior olivary nucleus development + 2
          superior raphe nucleus development 0
          trigeminal motor nucleus development 0
          trigeminal sensory nucleus development + 3
          vestibular nucleus development 3
paths to the root